Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6935
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7487 | 3.851e-03 | 6.430e-04 | 7.832e-01 | 1.939e-06 |
|---|
| Loi | 0.2307 | 7.967e-02 | 1.120e-02 | 4.268e-01 | 3.810e-04 |
|---|
| Schmidt | 0.6764 | 0.000e+00 | 0.000e+00 | 4.183e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7912 | 0.000e+00 | 0.000e+00 | 3.418e-03 | 0.000e+00 |
|---|
| Wang | 0.2640 | 2.371e-03 | 4.093e-02 | 3.826e-01 | 3.713e-05 |
|---|
Expression data for subnetwork 6935 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6935 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| EP300 |   | 113 | 4 | 1 | 4 | -0.149 | 0.087 | 0.102 | 0.052 | 0.025 |
|---|
| TEK | | 18 | 86 | 83 | 95 | -0.149 | -0.049 | 0.174 | 0.015 | 0.113 |
|---|
| PARD6A | | 2 | 743 | 366 | 395 | 0.140 | -0.084 | 0.008 | 0.161 | 0.084 |
|---|
| SORBS1 | | 57 | 19 | 1 | 13 | -0.043 | 0.015 | 0.314 | -0.072 | 0.200 |
|---|
| ADD1 | | 8 | 222 | 366 | 373 | -0.085 | 0.116 | 0.035 | undef | -0.098 |
|---|
| NQO1 | | 21 | 73 | 366 | 354 | -0.115 | 0.069 | -0.189 | 0.321 | 0.118 |
|---|
| NPAS2 | | 3 | 557 | 366 | 389 | 0.116 | 0.253 | -0.157 | -0.062 | -0.093 |
|---|
| RET | | 7 | 256 | 366 | 376 | 0.098 | 0.063 | -0.179 | undef | -0.159 |
|---|
| SUMO2 | | 22 | 69 | 366 | 345 | 0.117 | 0.062 | 0.294 | 0.141 | -0.096 |
|---|
| FGD2 | | 1 | 1195 | 366 | 423 | 0.202 | -0.028 | -0.054 | undef | 0.033 |
|---|
| TP53 | | 85 | 7 | 1 | 6 | -0.167 | 0.148 | -0.027 | 0.252 | 0.147 |
|---|
| ERBB2 | | 141 | 1 | 1 | 1 | -0.103 | 0.092 | -0.090 | 0.267 | 0.046 |
|---|
| ID4 | | 35 | 34 | 236 | 223 | -0.179 | 0.137 | 0.241 | undef | 0.036 |
|---|
| CDKN1A | | 110 | 5 | 1 | 5 | 0.064 | 0.254 | 0.030 | undef | 0.082 |
|---|
| PRKCA | | 63 | 15 | 1 | 10 | -0.016 | -0.088 | 0.174 | 0.095 | 0.005 |
|---|
| FOSL2 | | 3 | 557 | 366 | 389 | 0.100 | 0.080 | -0.119 | -0.154 | 0.080 |
|---|
| BARD1 | | 69 | 12 | 141 | 132 | 0.179 | -0.165 | 0.086 | 0.245 | -0.104 |
|---|
| CDKN2C | | 16 | 104 | 236 | 227 | 0.216 | -0.106 | 0.202 | -0.024 | -0.081 |
|---|
| TDG | | 1 | 1195 | 366 | 423 | 0.037 | 0.007 | -0.038 | 0.079 | 0.093 |
|---|
| CDC42 | | 26 | 52 | 179 | 177 | 0.047 | 0.242 | -0.027 | 0.040 | -0.042 |
|---|
| CTNNB1 | | 43 | 25 | 83 | 81 | -0.113 | 0.187 | 0.159 | -0.090 | 0.239 |
|---|
| CDH1 | | 37 | 32 | 296 | 278 | -0.227 | 0.187 | -0.236 | 0.137 | -0.024 |
|---|
| LIN7A | | 6 | 301 | 366 | 377 | -0.189 | -0.074 | 0.108 | 0.065 | -0.146 |
|---|
| POLE3 | | 17 | 95 | 141 | 138 | -0.083 | -0.033 | 0.231 | 0.096 | 0.011 |
|---|
| KIT | | 39 | 29 | 1 | 18 | -0.130 | -0.091 | 0.235 | -0.046 | -0.059 |
|---|
| TLR4 | | 1 | 1195 | 366 | 423 | 0.081 | 0.045 | undef | undef | undef |
|---|
| HOXC10 | | 1 | 1195 | 366 | 423 | -0.015 | 0.116 | -0.133 | 0.047 | -0.017 |
|---|
| CIRBP | | 5 | 360 | 366 | 379 | -0.069 | 0.208 | 0.110 | 0.049 | -0.045 |
|---|
| MMP1 | | 11 | 148 | 366 | 360 | 0.192 | 0.014 | 0.036 | 0.044 | 0.260 |
|---|
| ATF3 | | 17 | 95 | 179 | 189 | 0.225 | -0.021 | 0.000 | undef | -0.039 |
|---|
| FLNA | | 50 | 20 | 1 | 14 | 0.081 | 0.107 | 0.148 | 0.268 | 0.126 |
|---|
| CD14 | | 2 | 743 | 366 | 395 | 0.183 | -0.144 | 0.050 | -0.207 | 0.013 |
|---|
| VEGFA | | 68 | 14 | 83 | 78 | 0.090 | 0.200 | 0.030 | 0.095 | 0.148 |
|---|
| YWHAG | | 24 | 62 | 296 | 279 | 0.067 | 0.024 | undef | 0.266 | undef |
|---|
| PTGS2 | | 2 | 743 | 366 | 395 | 0.091 | -0.073 | 0.250 | -0.177 | 0.152 |
|---|
| BRCA2 | | 41 | 28 | 236 | 222 | 0.206 | -0.124 | -0.066 | 0.233 | -0.116 |
|---|
| WDR46 | | 2 | 743 | 366 | 395 | 0.055 | 0.154 | 0.106 | -0.094 | 0.034 |
|---|
| GSK3B | | 79 | 8 | 179 | 169 | -0.130 | 0.292 | -0.129 | 0.291 | 0.057 |
|---|
| KLF5 | | 76 | 9 | 1 | 7 | 0.077 | 0.117 | -0.007 | -0.110 | -0.006 |
|---|
| GATA5 | | 8 | 222 | 366 | 373 | 0.161 | -0.031 | undef | undef | undef |
|---|
| FOSL1 | | 11 | 148 | 366 | 360 | -0.040 | 0.164 | 0.010 | 0.128 | 0.005 |
|---|
| PTN | | 24 | 62 | 236 | 225 | undef | 0.022 | 0.000 | 0.054 | -0.092 |
|---|
| PSPH | | 20 | 81 | 366 | 356 | 0.240 | -0.019 | -0.102 | 0.358 | 0.025 |
|---|
| DCAF13 | | 2 | 743 | 366 | 395 | 0.049 | -0.211 | undef | -0.060 | undef |
|---|
| PARD3 | | 6 | 301 | 366 | 377 | 0.030 | -0.006 | -0.052 | 0.040 | -0.090 |
|---|
| GFRA2 | | 1 | 1195 | 366 | 423 | -0.106 | -0.030 | 0.000 | undef | -0.092 |
|---|
| C10orf2 | | 2 | 743 | 366 | 395 | 0.007 | 0.040 | 0.228 | undef | -0.028 |
|---|
| DCTN2 | | 8 | 222 | 366 | 373 | 0.014 | 0.150 | 0.061 | 0.113 | 0.303 |
|---|
| GADD45G | | 43 | 25 | 141 | 134 | 0.030 | -0.029 | -0.207 | 0.201 | -0.055 |
|---|
| TRIO | | 3 | 557 | 366 | 389 | 0.067 | 0.058 | -0.062 | 0.196 | -0.134 |
|---|
| TIMP4 | | 2 | 743 | 366 | 395 | 0.050 | 0.044 | 0.193 | -0.037 | -0.153 |
|---|
| RCAN1 | | 2 | 743 | 366 | 395 | -0.002 | 0.111 | 0.005 | -0.019 | -0.045 |
|---|
| PSEN1 | | 10 | 167 | 366 | 362 | -0.041 | 0.110 | undef | 0.083 | undef |
|---|
| RSRC1 | | 21 | 73 | 366 | 354 | 0.023 | 0.104 | 0.105 | -0.098 | 0.212 |
|---|
| SLC9A2 | | 1 | 1195 | 366 | 423 | 0.093 | -0.030 | -0.085 | undef | -0.194 |
|---|
| RND1 | | 6 | 301 | 236 | 239 | -0.046 | 0.085 | 0.022 | 0.082 | 0.113 |
|---|
| RASSF8 | | 5 | 360 | 296 | 310 | -0.078 | 0.121 | 0.174 | 0.114 | -0.092 |
|---|
| JUN | | 26 | 52 | 179 | 177 | 0.200 | 0.051 | 0.220 | undef | 0.200 |
|---|
| TOP2A | | 20 | 81 | 1 | 28 | 0.193 | -0.168 | 0.054 | -0.064 | 0.071 |
|---|
| IRAK1 | | 2 | 743 | 366 | 395 | 0.266 | -0.023 | 0.092 | -0.023 | -0.102 |
|---|
| TIMP1 | | 1 | 1195 | 366 | 423 | 0.010 | 0.010 | 0.143 | 0.009 | 0.059 |
|---|
| MYC | | 72 | 10 | 1 | 8 | -0.101 | -0.169 | 0.188 | undef | -0.134 |
|---|
| STC2 | | 5 | 360 | 236 | 242 | -0.009 | 0.056 | 0.181 | -0.185 | 0.016 |
|---|
| AMH | | 10 | 167 | 366 | 362 | 0.103 | 0.056 | 0.113 | -0.187 | 0.301 |
|---|
| JUNB | | 20 | 81 | 179 | 185 | 0.057 | 0.086 | 0.065 | 0.001 | -0.015 |
|---|
| WT1 | | 33 | 37 | 1 | 21 | 0.254 | -0.039 | 0.036 | undef | 0.172 |
|---|
| IGF2BP1 | | 15 | 111 | 366 | 359 | 0.135 | -0.036 | undef | 0.190 | undef |
|---|
| GFRA1 | | 2 | 743 | 366 | 395 | 0.011 | -0.067 | 0.292 | 0.051 | 0.029 |
|---|
| REV1 | | 9 | 196 | 296 | 285 | 0.090 | -0.027 | 0.165 | 0.049 | 0.039 |
|---|
| SP1 | | 72 | 10 | 83 | 77 | 0.222 | -0.254 | 0.239 | 0.020 | 0.082 |
|---|
| MYB | | 28 | 47 | 366 | 344 | -0.028 | 0.075 | 0.002 | 0.065 | -0.012 |
|---|
| MN1 | | 3 | 557 | 366 | 389 | -0.166 | -0.047 | 0.150 | 0.010 | 0.011 |
|---|
| PIK3R1 | | 127 | 2 | 1 | 2 | -0.237 | 0.381 | 0.065 | undef | -0.002 |
|---|
| UTP15 | | 2 | 743 | 366 | 395 | 0.266 | 0.140 | undef | undef | undef |
|---|
| IMP3 | | 4 | 440 | 366 | 381 | 0.042 | -0.132 | 0.113 | -0.304 | -0.196 |
|---|
| FOS | | 42 | 27 | 1 | 17 | -0.137 | 0.129 | 0.185 | -0.144 | 0.234 |
|---|
| MGMT | | 5 | 360 | 366 | 379 | 0.184 | -0.022 | 0.201 | undef | 0.196 |
|---|
| EGFR | | 117 | 3 | 1 | 3 | -0.195 | 0.240 | -0.205 | -0.187 | 0.065 |
|---|
| TCF7L2 | | 17 | 95 | 366 | 358 | -0.021 | 0.143 | 0.280 | undef | 0.101 |
|---|
| MAP1B | | 69 | 12 | 1 | 9 | -0.123 | 0.263 | -0.107 | 0.304 | 0.100 |
|---|
| IL6 | | 9 | 196 | 366 | 365 | 0.257 | -0.106 | 0.226 | 0.024 | 0.035 |
|---|
| GRB7 | | 58 | 18 | 1 | 12 | 0.021 | 0.115 | -0.072 | 0.229 | 0.129 |
|---|
| TIE1 | | 18 | 86 | 366 | 357 | -0.108 | 0.005 | 0.141 | -0.108 | 0.252 |
|---|
| PLD1 | | 17 | 95 | 1 | 29 | 0.132 | 0.033 | -0.158 | -0.062 | 0.123 |
|---|
| SNCAIP | | 10 | 167 | 366 | 362 | -0.091 | 0.013 | 0.092 | 0.136 | 0.059 |
|---|
| RABEP1 | | 2 | 743 | 366 | 395 | -0.004 | 0.239 | 0.060 | 0.060 | 0.008 |
|---|
GO Enrichment output for subnetwork 6935 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 |  | 3.092E-11 | 7.554E-08 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 8.397E-09 | 1.026E-05 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.421E-08 | 1.157E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.596E-08 | 9.748E-06 |
|---|
| filopodium assembly | GO:0046847 | | 6.308E-08 | 3.082E-05 |
|---|
| microspike assembly | GO:0030035 | | 8.689E-08 | 3.538E-05 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 2.098E-07 | 7.322E-05 |
|---|
| positive regulation of locomotion | GO:0040017 | | 2.615E-07 | 7.985E-05 |
|---|
| regulation of chemotaxis | GO:0050920 | | 3.323E-07 | 9.021E-05 |
|---|
| regulation of behavior | GO:0050795 | | 5.192E-07 | 1.269E-04 |
|---|
| regulation of positive chemotaxis | GO:0050926 | | 8.118E-07 | 1.803E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.954E-11 | 4.702E-08 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.156E-08 | 1.391E-05 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.955E-08 | 1.568E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.303E-08 | 1.385E-05 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 2.608E-07 | 1.255E-04 |
|---|
| positive regulation of locomotion | GO:0040017 | | 2.655E-07 | 1.065E-04 |
|---|
| regulation of chemotaxis | GO:0050920 | | 3.416E-07 | 1.174E-04 |
|---|
| cell cycle arrest | GO:0007050 | | 4.54E-07 | 1.365E-04 |
|---|
| regulation of behavior | GO:0050795 | | 5.453E-07 | 1.458E-04 |
|---|
| regulation of positive chemotaxis | GO:0050926 | | 1.008E-06 | 2.426E-04 |
|---|
| response to UV | GO:0009411 | | 1.672E-06 | 3.657E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 2.427E-08 | 5.582E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.145E-08 | 3.617E-05 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 4.201E-08 | 3.221E-05 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 2.929E-07 | 1.684E-04 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 2.929E-07 | 1.347E-04 |
|---|
| positive regulation of locomotion | GO:0040017 | | 4.795E-07 | 1.838E-04 |
|---|
| regulation of chemotaxis | GO:0050920 | | 6.252E-07 | 2.054E-04 |
|---|
| regulation of behavior | GO:0050795 | | 8.037E-07 | 2.311E-04 |
|---|
| filopodium assembly | GO:0046847 | | 1.355E-06 | 3.462E-04 |
|---|
| regulation of positive chemotaxis | GO:0050926 | | 1.355E-06 | 3.116E-04 |
|---|
| response to UV | GO:0009411 | | 1.929E-06 | 4.034E-04 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of transferase activity | GO:0051347 | | 7.723E-07 | 1.423E-03 |
|---|
| positive regulation of nucleocytoplasmic transport | GO:0046824 | | 1.648E-06 | 1.519E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.979E-06 | 1.216E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.967E-06 | 1.367E-03 |
|---|
| positive regulation of protein transport | GO:0051222 | | 4.307E-06 | 1.588E-03 |
|---|
| positive regulation of epithelial cell proliferation | GO:0050679 | | 4.902E-06 | 1.506E-03 |
|---|
| response to molecule of bacterial origin | GO:0002237 | | 4.902E-06 | 1.291E-03 |
|---|
| regulation of protein transport | GO:0051223 | | 5.693E-06 | 1.312E-03 |
|---|
| regulation of intracellular transport | GO:0032386 | | 6.081E-06 | 1.245E-03 |
|---|
| positive regulation of protein kinase activity | GO:0045860 | | 8.419E-06 | 1.552E-03 |
|---|
| regulation of protein localization | GO:0032880 | | 8.759E-06 | 1.468E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 2.427E-08 | 5.582E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.145E-08 | 3.617E-05 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 4.201E-08 | 3.221E-05 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 2.929E-07 | 1.684E-04 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 2.929E-07 | 1.347E-04 |
|---|
| positive regulation of locomotion | GO:0040017 | | 4.795E-07 | 1.838E-04 |
|---|
| regulation of chemotaxis | GO:0050920 | | 6.252E-07 | 2.054E-04 |
|---|
| regulation of behavior | GO:0050795 | | 8.037E-07 | 2.311E-04 |
|---|
| filopodium assembly | GO:0046847 | | 1.355E-06 | 3.462E-04 |
|---|
| regulation of positive chemotaxis | GO:0050926 | | 1.355E-06 | 3.116E-04 |
|---|
| response to UV | GO:0009411 | | 1.929E-06 | 4.034E-04 |
|---|
