Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6906

score

Expression data for subnetwork 6906 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6906 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
PTP4A1		1	1195	1165	1195	0.216	0.023	0.034	-0.021	0.239
TEK		18	86	83	95	-0.149	-0.049	0.174	0.015	0.113
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CCNC		5	360	570	562	0.085	-0.053	undef	0.028	undef
SPRED1		1	1195	1165	1195	0.093	-0.048	undef	undef	undef
NQO1		21	73	366	354	-0.115	0.069	-0.189	0.321	0.118
SUMO2		22	69	366	345	0.117	0.062	0.294	0.141	-0.096
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
PDGFRA		10	167	141	146	-0.035	0.008	0.118	0.107	0.119
PDGFB		7	256	1165	1135	0.020	0.046	0.085	-0.049	0.338
PELP1		1	1195	1165	1195	0.037	0.020	0.107	undef	-0.041
CDK3		7	256	590	570	-0.076	0.189	-0.041	-0.089	0.082
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
NELL2		7	256	727	714	-0.005	0.138	0.421	-0.027	0.074
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
SRPX		2	743	1165	1163	-0.022	0.100	0.245	0.259	0.133
GP1BA		2	743	1165	1163	-0.106	0.001	0.101	0.001	-0.024
CTGF		32	40	318	290	-0.169	0.181	0.126	0.101	0.209
SHC3		3	557	1165	1151	-0.101	-0.039	-0.050	-0.040	-0.009
TUBG1		1	1195	1165	1195	0.015	-0.172	0.071	-0.046	0.145
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
RECQL5		2	743	1165	1163	-0.061	-0.061	-0.027	0.091	-0.252
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
CPSF6		6	301	318	330	0.164	0.052	0.091	0.129	-0.088
PDGFRB		12	140	141	142	-0.094	0.224	0.127	0.153	0.189
PTPRK		14	117	83	96	0.156	0.141	-0.094	0.048	-0.024
PLK1		11	148	236	232	0.142	-0.143	0.094	-0.192	-0.163
TAF5		5	360	478	476	0.166	-0.131	0.125	undef	0.076
PARP1		29	45	83	84	-0.036	-0.162	-0.089	0.238	0.012
PTBP2		2	743	1102	1102	0.073	0.057	0.131	-0.114	0.117
GABPA		23	66	696	665	0.033	-0.183	0.066	0.141	-0.161
PTBP1		3	557	1165	1151	-0.038	-0.090	-0.113	0.054	-0.110
EYA3		9	196	318	324	-0.034	0.053	-0.020	0.188	-0.142
SAT1		6	301	236	239	0.219	0.010	-0.066	-0.119	0.063
CR2		5	360	957	938	-0.042	-0.089	0.101	0.018	0.015
PRKAG1		1	1195	1165	1195	-0.074	0.007	-0.214	-0.075	0.053
ACTN1		18	86	318	313	0.016	0.347	0.068	0.100	0.314
FLNA		50	20	1	14	0.081	0.107	0.148	0.268	0.126
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
TUBA1B		6	301	590	582	0.116	0.094	0.249	0.101	0.128
RALA		10	167	318	323	0.224	0.207	-0.047	0.169	0.146
GTPBP6		6	301	928	907	-0.143	-0.131	-0.167	0.155	-0.129
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
LPL		13	124	236	230	-0.102	-0.062	0.292	0.087	-0.105
TAF9		2	743	1165	1163	0.043	-0.014	undef	undef	undef
EYA2		13	124	318	316	-0.034	0.113	-0.142	undef	-0.019
PRKAA2		6	301	1165	1138	-0.204	0.148	0.086	0.250	-0.078
PIAS4		2	743	1165	1163	-0.010	-0.003	-0.088	-0.085	-0.035
CDKN2B		7	256	236	237	0.066	0.050	-0.028	0.039	0.153
TRIP6		1	1195	1165	1195	0.170	0.145	0.034	undef	-0.213
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
DYM		2	743	1102	1102	-0.053	-0.105	-0.076	0.033	0.109
EYA1		8	222	1010	981	0.135	-0.065	0.162	0.068	-0.088
NACA		5	360	1165	1143	0.075	0.158	0.046	-0.135	0.252
ATF7		28	47	179	175	0.085	0.115	-0.088	0.172	-0.092
MAPK8IP3		3	557	928	925	0.010	0.045	-0.046	undef	0.059
FOXA3		12	140	318	322	0.192	0.289	undef	-0.171	undef
KLC1		4	440	1055	1035	0.071	0.189	0.204	0.139	0.132
GSTT1		15	111	1	32	0.148	0.107	-0.190	0.022	-0.064
CCDC90B		2	743	236	272	0.163	0.058	0.152	undef	0.103
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
APLP1		8	222	727	703	0.284	0.043	-0.105	-0.121	-0.190
MED10		3	557	1165	1151	0.062	-0.149	undef	undef	undef
KCNN4		1	1195	1165	1195	0.086	0.039	0.018	-0.273	-0.065
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
GMPS		7	256	318	328	0.083	-0.022	0.044	-0.019	0.151
KCTD13		1	1195	1165	1195	-0.059	-0.126	-0.240	undef	-0.034
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
ARHGAP1		6	301	179	205	-0.167	0.297	0.001	-0.032	0.251
BNIP3		11	148	236	232	0.193	0.071	0.102	0.119	0.285
ZNF423		2	743	1165	1163	-0.061	0.100	0.017	undef	0.205
DLX4		10	167	236	234	0.291	0.057	-0.004	undef	-0.059
SERBP1		2	743	727	734	0.111	0.022	0.041	-0.093	0.019
NCOA2		3	557	1165	1151	-0.078	0.080	-0.159	0.104	0.057
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
C13orf34		3	557	1165	1151	0.059	0.057	0.007	undef	-0.147
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
FSCN1		1	1195	1165	1195	-0.015	-0.022	-0.034	undef	-0.082
HIF1A		13	124	236	230	-0.098	0.224	-0.118	0.135	0.356
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
ATN1		7	256	412	414	-0.005	-0.093	0.005	-0.185	-0.136
TUBB2B		13	124	141	141	-0.036	0.304	0.045	0.187	0.139
AURKA		3	557	1165	1151	0.189	-0.176	0.100	-0.051	0.050
SH3BGRL2		1	1195	1165	1195	0.002	-0.094	undef	undef	undef
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6906 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell migration	GO:0030335		4.783E-12	1.168E-08
positive regulation of cell motion	GO:0051272		1.577E-11	1.926E-08
negative regulation of phosphorylation	GO:0042326		1.496E-10	1.218E-07
negative regulation of phosphorus metabolic process	GO:0010563		2.812E-10	1.717E-07
regulation of mitochondrial membrane permeability	GO:0046902		8.952E-09	4.374E-06
induction of apoptosis by intracellular signals	GO:0008629		1.745E-08	7.104E-06
platelet-derived growth factor receptor signaling pathway	GO:0048008		6.729E-08	2.348E-05
apoptotic mitochondrial changes	GO:0008637		1.659E-07	5.066E-05
induction of positive chemotaxis	GO:0050930		2.21E-07	5.998E-05
inactivation of MAPK activity	GO:0000188		2.788E-07	6.811E-05
positive regulation of locomotion	GO:0040017		2.788E-07	6.192E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell migration	GO:0030335		1.471E-11	3.54E-08
positive regulation of cell motion	GO:0051272		4.93E-11	5.931E-08
negative regulation of phosphorylation	GO:0042326		3.791E-10	3.04E-07
negative regulation of phosphorus metabolic process	GO:0010563		7.113E-10	4.279E-07
regulation of mitochondrial membrane permeability	GO:0046902		1.535E-08	7.386E-06
induction of apoptosis by intracellular signals	GO:0008629		4.348E-08	1.743E-05
platelet-derived growth factor receptor signaling pathway	GO:0048008		1.309E-07	4.499E-05
apoptotic mitochondrial changes	GO:0008637		3.22E-07	9.683E-05
induction of positive chemotaxis	GO:0050930		3.778E-07	1.01E-04
inactivation of MAPK activity	GO:0000188		4.2E-07	1.011E-04
positive regulation of locomotion	GO:0040017		4.2E-07	9.186E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell migration	GO:0030335		4.401E-11	1.012E-07
positive regulation of cell motion	GO:0051272		1.177E-10	1.354E-07
negative regulation of phosphorylation	GO:0042326		1.379E-09	1.057E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.661E-09	1.53E-06
platelet-derived growth factor receptor signaling pathway	GO:0048008		1.816E-08	8.355E-06
regulation of mitochondrial membrane permeability	GO:0046902		3.987E-08	1.528E-05
induction of positive chemotaxis	GO:0050930		5.458E-07	1.793E-04
apoptotic mitochondrial changes	GO:0008637		5.805E-07	1.669E-04
positive regulation of locomotion	GO:0040017		1.034E-06	2.643E-04
regulation of chemotaxis	GO:0050920		1.347E-06	3.098E-04
protein sumoylation	GO:0016925		1.613E-06	3.373E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell migration	GO:0030335		1.135E-09	2.092E-06
positive regulation of cell motion	GO:0051272		2.256E-09	2.079E-06
platelet-derived growth factor receptor signaling pathway	GO:0048008		8.522E-09	5.235E-06
regulation of cell migration	GO:0030334		1.828E-08	8.423E-06
regulation of locomotion	GO:0040012		4.757E-08	1.753E-05
regulation of cell motion	GO:0051270		4.757E-08	1.461E-05
response to hypoxia	GO:0001666		5.879E-07	1.548E-04
response to oxygen levels	GO:0070482		6.704E-07	1.545E-04
positive regulation of endothelial cell proliferation	GO:0001938		9.39E-07	1.923E-04
peptidyl-amino acid modification	GO:0018193		1.244E-06	2.292E-04
mitochondrial membrane organization	GO:0007006		5.176E-06	8.673E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell migration	GO:0030335		4.401E-11	1.012E-07
positive regulation of cell motion	GO:0051272		1.177E-10	1.354E-07
negative regulation of phosphorylation	GO:0042326		1.379E-09	1.057E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.661E-09	1.53E-06
platelet-derived growth factor receptor signaling pathway	GO:0048008		1.816E-08	8.355E-06
regulation of mitochondrial membrane permeability	GO:0046902		3.987E-08	1.528E-05
induction of positive chemotaxis	GO:0050930		5.458E-07	1.793E-04
apoptotic mitochondrial changes	GO:0008637		5.805E-07	1.669E-04
positive regulation of locomotion	GO:0040017		1.034E-06	2.643E-04
regulation of chemotaxis	GO:0050920		1.347E-06	3.098E-04
protein sumoylation	GO:0016925		1.613E-06	3.373E-04