Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6693
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7518 | 3.645e-03 | 5.990e-04 | 7.758e-01 | 1.694e-06 |
|---|
| Loi | 0.2311 | 7.911e-02 | 1.106e-02 | 4.254e-01 | 3.721e-04 |
|---|
| Schmidt | 0.6744 | 0.000e+00 | 0.000e+00 | 4.387e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7909 | 0.000e+00 | 0.000e+00 | 3.453e-03 | 0.000e+00 |
|---|
| Wang | 0.2627 | 2.529e-03 | 4.244e-02 | 3.899e-01 | 4.185e-05 |
|---|
Expression data for subnetwork 6693 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6693 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| FBXW11 |   | 3 | 557 | 658 | 654 | 0.154 | 0.225 | 0.262 | undef | 0.169 |
|---|
| NQO1 | | 21 | 73 | 366 | 354 | -0.115 | 0.069 | -0.189 | 0.321 | 0.118 |
|---|
| NDRG1 | | 6 | 301 | 658 | 646 | 0.222 | 0.143 | -0.040 | -0.018 | 0.242 |
|---|
| TP53 | | 85 | 7 | 1 | 6 | -0.167 | 0.148 | -0.027 | 0.252 | 0.147 |
|---|
| ERBB2 | | 141 | 1 | 1 | 1 | -0.103 | 0.092 | -0.090 | 0.267 | 0.046 |
|---|
| ID4 | | 35 | 34 | 236 | 223 | -0.179 | 0.137 | 0.241 | undef | 0.036 |
|---|
| CDKN1A | | 110 | 5 | 1 | 5 | 0.064 | 0.254 | 0.030 | undef | 0.082 |
|---|
| BARD1 | | 69 | 12 | 141 | 132 | 0.179 | -0.165 | 0.086 | 0.245 | -0.104 |
|---|
| MYH10 | | 5 | 360 | 236 | 242 | -0.029 | 0.139 | 0.132 | undef | 0.223 |
|---|
| ARHGEF16 | | 10 | 167 | 296 | 283 | 0.096 | 0.036 | -0.047 | 0.200 | 0.038 |
|---|
| CAD | | 1 | 1195 | 658 | 705 | -0.110 | 0.038 | -0.116 | -0.008 | -0.047 |
|---|
| WFDC2 | | 5 | 360 | 236 | 242 | -0.011 | -0.011 | 0.333 | -0.162 | -0.157 |
|---|
| WEE1 | | 4 | 440 | 658 | 649 | -0.051 | 0.163 | 0.034 | undef | 0.215 |
|---|
| CTGF | | 32 | 40 | 318 | 290 | -0.169 | 0.181 | 0.126 | 0.101 | 0.209 |
|---|
| CTNNB1 | | 43 | 25 | 83 | 81 | -0.113 | 0.187 | 0.159 | -0.090 | 0.239 |
|---|
| PIN1 | | 24 | 62 | 179 | 181 | 0.194 | 0.040 | -0.040 | 0.065 | -0.048 |
|---|
| TWIST1 | | 50 | 20 | 1 | 14 | 0.044 | 0.194 | 0.061 | undef | 0.219 |
|---|
| PTPRK | | 14 | 117 | 83 | 96 | 0.156 | 0.141 | -0.094 | 0.048 | -0.024 |
|---|
| PARP1 | | 29 | 45 | 83 | 84 | -0.036 | -0.162 | -0.089 | 0.238 | 0.012 |
|---|
| ATF3 | | 17 | 95 | 179 | 189 | 0.225 | -0.021 | 0.000 | undef | -0.039 |
|---|
| FLNA | | 50 | 20 | 1 | 14 | 0.081 | 0.107 | 0.148 | 0.268 | 0.126 |
|---|
| C1orf123 | | 1 | 1195 | 658 | 705 | 0.036 | -0.187 | -0.021 | -0.207 | 0.218 |
|---|
| VEGFA | | 68 | 14 | 83 | 78 | 0.090 | 0.200 | 0.030 | 0.095 | 0.148 |
|---|
| CDC25C | | 3 | 557 | 658 | 654 | 0.189 | 0.029 | 0.201 | -0.055 | -0.062 |
|---|
| YWHAG | | 24 | 62 | 296 | 279 | 0.067 | 0.024 | undef | 0.266 | undef |
|---|
| RALA | | 10 | 167 | 318 | 323 | 0.224 | 0.207 | -0.047 | 0.169 | 0.146 |
|---|
| RUVBL1 | | 2 | 743 | 658 | 674 | 0.112 | -0.107 | 0.049 | -0.179 | 0.027 |
|---|
| DAXX | | 1 | 1195 | 658 | 705 | -0.018 | 0.003 | 0.021 | -0.091 | -0.055 |
|---|
| LUC7L3 | | 16 | 104 | 296 | 281 | 0.043 | 0.237 | 0.175 | 0.135 | 0.074 |
|---|
| XRCC6 | | 1 | 1195 | 658 | 705 | -0.085 | -0.029 | -0.070 | -0.078 | -0.025 |
|---|
| HSPB8 | | 2 | 743 | 658 | 674 | -0.077 | 0.020 | 0.134 | 0.021 | 0.178 |
|---|
| DSG1 | | 10 | 167 | 658 | 636 | 0.072 | -0.075 | 0.252 | -0.061 | 0.068 |
|---|
| PTN | | 24 | 62 | 236 | 225 | undef | 0.022 | 0.000 | 0.054 | -0.092 |
|---|
| MCM10 | | 5 | 360 | 179 | 208 | 0.178 | -0.245 | 0.015 | undef | -0.063 |
|---|
| TRAF2 | | 3 | 557 | 658 | 654 | 0.185 | -0.172 | -0.013 | undef | -0.092 |
|---|
| ATF7 | | 28 | 47 | 179 | 175 | 0.085 | 0.115 | -0.088 | 0.172 | -0.092 |
|---|
| TCF3 | | 1 | 1195 | 658 | 705 | 0.084 | 0.035 | 0.156 | undef | 0.008 |
|---|
| SRRM1 | | 10 | 167 | 296 | 283 | -0.120 | 0.139 | 0.244 | 0.294 | -0.109 |
|---|
| GADD45G | | 43 | 25 | 141 | 134 | 0.030 | -0.029 | -0.207 | 0.201 | -0.055 |
|---|
| GDF15 | | 2 | 743 | 658 | 674 | undef | -0.078 | 0.000 | 0.196 | -0.092 |
|---|
| PTPN3 | | 11 | 148 | 658 | 635 | 0.029 | 0.060 | -0.067 | 0.225 | -0.034 |
|---|
| TNFRSF19 | | 1 | 1195 | 658 | 705 | -0.004 | -0.031 | undef | 0.073 | undef |
|---|
| GSTP1 | | 14 | 117 | 1 | 34 | 0.222 | -0.166 | 0.201 | 0.126 | -0.136 |
|---|
| RSRC1 | | 21 | 73 | 366 | 354 | 0.023 | 0.104 | 0.105 | -0.098 | 0.212 |
|---|
| RND1 | | 6 | 301 | 236 | 239 | -0.046 | 0.085 | 0.022 | 0.082 | 0.113 |
|---|
| GPD1 | | 7 | 256 | 658 | 644 | 0.006 | -0.019 | 0.112 | -0.034 | 0.033 |
|---|
| TOP2A | | 20 | 81 | 1 | 28 | 0.193 | -0.168 | 0.054 | -0.064 | 0.071 |
|---|
| RB1 | | 31 | 43 | 1 | 22 | 0.013 | -0.051 | 0.057 | 0.100 | -0.082 |
|---|
| GHR | | 35 | 34 | 83 | 83 | -0.112 | 0.174 | 0.090 | 0.176 | 0.201 |
|---|
| SYNJ2 | | 3 | 557 | 236 | 265 | -0.132 | 0.008 | 0.015 | undef | -0.066 |
|---|
| CASP1 | | 6 | 301 | 552 | 544 | 0.204 | -0.166 | -0.046 | undef | -0.034 |
|---|
| MDFI | | 17 | 95 | 236 | 226 | -0.075 | -0.001 | 0.177 | 0.169 | -0.112 |
|---|
| MAP3K1 | | 5 | 360 | 141 | 155 | 0.112 | 0.039 | undef | undef | undef |
|---|
| CDC25A | | 8 | 222 | 570 | 555 | 0.113 | -0.170 | 0.151 | -0.301 | -0.003 |
|---|
| MYO10 | | 3 | 557 | 570 | 572 | -0.159 | 0.121 | -0.191 | 0.074 | 0.066 |
|---|
| PTPN13 | | 1 | 1195 | 658 | 705 | 0.139 | 0.122 | 0.147 | undef | 0.080 |
|---|
| CALM1 | | 6 | 301 | 614 | 602 | 0.014 | 0.021 | 0.192 | 0.221 | 0.247 |
|---|
| PIK3R1 | | 127 | 2 | 1 | 2 | -0.237 | 0.381 | 0.065 | undef | -0.002 |
|---|
| FHL2 | | 21 | 73 | 658 | 630 | 0.143 | 0.239 | -0.033 | 0.107 | 0.294 |
|---|
| WRN | | 1 | 1195 | 658 | 705 | -0.066 | 0.019 | 0.096 | 0.157 | -0.095 |
|---|
| FOS | | 42 | 27 | 1 | 17 | -0.137 | 0.129 | 0.185 | -0.144 | 0.234 |
|---|
| IRS4 | | 32 | 40 | 236 | 224 | 0.115 | -0.111 | -0.088 | 0.096 | 0.142 |
|---|
| PLXNB2 | | 4 | 440 | 590 | 585 | -0.092 | 0.308 | -0.136 | undef | -0.062 |
|---|
| TCF7L2 | | 17 | 95 | 366 | 358 | -0.021 | 0.143 | 0.280 | undef | 0.101 |
|---|
| EGFR | | 117 | 3 | 1 | 3 | -0.195 | 0.240 | -0.205 | -0.187 | 0.065 |
|---|
| MAP1B | | 69 | 12 | 1 | 9 | -0.123 | 0.263 | -0.107 | 0.304 | 0.100 |
|---|
| ID3 | | 9 | 196 | 658 | 637 | 0.072 | -0.006 | 0.192 | -0.023 | 0.057 |
|---|
| IKBKE | | 10 | 167 | 552 | 539 | 0.227 | -0.041 | -0.095 | -0.197 | 0.079 |
|---|
| NAT1 | | 3 | 557 | 658 | 654 | 0.175 | 0.043 | 0.032 | -0.014 | 0.011 |
|---|
| VWF | | 5 | 360 | 525 | 518 | -0.091 | 0.072 | 0.152 | 0.127 | 0.100 |
|---|
| YWHAZ | | 3 | 557 | 658 | 654 | 0.043 | -0.274 | -0.018 | undef | 0.054 |
|---|
| FHL1 | | 14 | 117 | 614 | 591 | -0.041 | 0.104 | 0.301 | undef | 0.266 |
|---|
| CDK2 | | 31 | 43 | 179 | 174 | 0.196 | -0.096 | 0.109 | 0.001 | 0.362 |
|---|
| CDKN2A | | 60 | 17 | 1 | 11 | 0.263 | -0.113 | 0.111 | undef | -0.105 |
|---|
| FHL5 | | 3 | 557 | 658 | 654 | 0.022 | 0.031 | 0.145 | -0.095 | 0.153 |
|---|
GO Enrichment output for subnetwork 6693 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 |  | 1.767E-09 | 4.317E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 3.775E-09 | 4.611E-06 |
|---|
| B cell lineage commitment | GO:0002326 | | 2.62E-08 | 2.134E-05 |
|---|
| androgen receptor signaling pathway | GO:0030521 | | 4.1E-08 | 2.504E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.53E-08 | 2.702E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.588E-07 | 6.465E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 5.221E-07 | 1.822E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.862E-07 | 1.79E-04 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 6.683E-07 | 1.814E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 7.038E-07 | 1.719E-04 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 1.295E-06 | 2.876E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.453E-09 | 3.496E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 5.234E-09 | 6.297E-06 |
|---|
| B cell lineage commitment | GO:0002326 | | 3.631E-08 | 2.912E-05 |
|---|
| androgen receptor signaling pathway | GO:0030521 | | 5.56E-08 | 3.344E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.007E-08 | 3.853E-05 |
|---|
| interphase | GO:0051325 | | 1.022E-07 | 4.097E-05 |
|---|
| cell cycle arrest | GO:0007050 | | 1.196E-07 | 4.112E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.55E-07 | 7.668E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 7.221E-07 | 1.93E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.375E-07 | 2.256E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 1.048E-06 | 2.293E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 1.451E-08 | 3.338E-05 |
|---|
| B cell lineage commitment | GO:0002326 | | 1.004E-07 | 1.155E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.456E-07 | 1.883E-04 |
|---|
| interphase | GO:0051325 | | 2.939E-07 | 1.69E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.326E-07 | 3.37E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 9.253E-07 | 3.547E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.061E-06 | 6.773E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 2.166E-06 | 6.227E-04 |
|---|
| cell cycle arrest | GO:0007050 | | 3.526E-06 | 9.012E-04 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 3.608E-06 | 8.298E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 3.975E-06 | 8.311E-04 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| androgen receptor signaling pathway | GO:0030521 | | 3.691E-07 | 6.803E-04 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 6.283E-07 | 5.79E-04 |
|---|
| positive regulation of protein kinase activity | GO:0045860 | | 1.151E-06 | 7.07E-04 |
|---|
| positive regulation of transferase activity | GO:0051347 | | 1.347E-06 | 6.204E-04 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 2.592E-06 | 9.553E-04 |
|---|
| regulation of MAP kinase activity | GO:0043405 | | 3.757E-06 | 1.154E-03 |
|---|
| steroid hormone receptor signaling pathway | GO:0030518 | | 4.073E-06 | 1.072E-03 |
|---|
| intracellular receptor-mediated signaling pathway | GO:0030522 | | 5.287E-06 | 1.218E-03 |
|---|
| negative regulation of protein transport | GO:0051224 | | 8.814E-06 | 1.805E-03 |
|---|
| cytoplasmic sequestering of protein | GO:0051220 | | 1.431E-05 | 2.638E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.828E-05 | 3.062E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 1.451E-08 | 3.338E-05 |
|---|
| B cell lineage commitment | GO:0002326 | | 1.004E-07 | 1.155E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.456E-07 | 1.883E-04 |
|---|
| interphase | GO:0051325 | | 2.939E-07 | 1.69E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.326E-07 | 3.37E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 9.253E-07 | 3.547E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.061E-06 | 6.773E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 2.166E-06 | 6.227E-04 |
|---|
| cell cycle arrest | GO:0007050 | | 3.526E-06 | 9.012E-04 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 3.608E-06 | 8.298E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 3.975E-06 | 8.311E-04 |
|---|
