Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6610
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7537 | 3.524e-03 | 5.740e-04 | 7.710e-01 | 1.560e-06 |
|---|
| Loi | 0.2305 | 7.997e-02 | 1.128e-02 | 4.275e-01 | 3.857e-04 |
|---|
| Schmidt | 0.6738 | 0.000e+00 | 0.000e+00 | 4.448e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7908 | 0.000e+00 | 0.000e+00 | 3.469e-03 | 0.000e+00 |
|---|
| Wang | 0.2623 | 2.585e-03 | 4.296e-02 | 3.923e-01 | 4.357e-05 |
|---|
Expression data for subnetwork 6610 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6610 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| EP300 |   | 113 | 4 | 1 | 4 | -0.149 | 0.087 | 0.102 | 0.052 | 0.025 |
|---|
| SLMAP | | 1 | 1195 | 179 | 247 | 0.093 | 0.057 | undef | -0.229 | undef |
|---|
| SORBS1 | | 57 | 19 | 1 | 13 | -0.043 | 0.015 | 0.314 | -0.072 | 0.200 |
|---|
| FBLN2 | | 5 | 360 | 83 | 110 | -0.036 | 0.122 | 0.207 | 0.037 | -0.007 |
|---|
| OSBPL9 | | 1 | 1195 | 179 | 247 | -0.196 | -0.068 | 0.002 | undef | 0.350 |
|---|
| ERBB2 | | 141 | 1 | 1 | 1 | -0.103 | 0.092 | -0.090 | 0.267 | 0.046 |
|---|
| CDKN1A | | 110 | 5 | 1 | 5 | 0.064 | 0.254 | 0.030 | undef | 0.082 |
|---|
| PRKCA | | 63 | 15 | 1 | 10 | -0.016 | -0.088 | 0.174 | 0.095 | 0.005 |
|---|
| YWHAE | | 4 | 440 | 179 | 209 | -0.018 | 0.112 | 0.279 | -0.094 | 0.014 |
|---|
| PDGFRA | | 10 | 167 | 141 | 146 | -0.035 | 0.008 | 0.118 | 0.107 | 0.119 |
|---|
| GRM5 | | 15 | 111 | 179 | 191 | 0.094 | -0.019 | 0.000 | 0.093 | -0.093 |
|---|
| PPP2R1B | | 6 | 301 | 141 | 152 | 0.042 | 0.002 | -0.002 | undef | 0.112 |
|---|
| CDK14 | | 7 | 256 | 179 | 201 | -0.151 | 0.011 | -0.071 | 0.212 | 0.107 |
|---|
| CCNA2 | | 21 | 73 | 179 | 183 | 0.176 | -0.053 | 0.188 | -0.078 | 0.246 |
|---|
| PLAU | | 12 | 140 | 179 | 192 | 0.187 | 0.153 | 0.141 | 0.072 | 0.192 |
|---|
| CDC42 | | 26 | 52 | 179 | 177 | 0.047 | 0.242 | -0.027 | 0.040 | -0.042 |
|---|
| PIN1 | | 24 | 62 | 179 | 181 | 0.194 | 0.040 | -0.040 | 0.065 | -0.048 |
|---|
| RAB26 | | 1 | 1195 | 179 | 247 | 0.074 | -0.003 | 0.066 | 0.184 | -0.007 |
|---|
| PPP2R2B | | 39 | 29 | 179 | 173 | 0.124 | -0.019 | 0.029 | 0.116 | -0.073 |
|---|
| KIT | | 39 | 29 | 1 | 18 | -0.130 | -0.091 | 0.235 | -0.046 | -0.059 |
|---|
| PPARG | | 7 | 256 | 179 | 201 | -0.119 | 0.011 | 0.105 | 0.059 | 0.039 |
|---|
| ATF3 | | 17 | 95 | 179 | 189 | 0.225 | -0.021 | 0.000 | undef | -0.039 |
|---|
| AURKB | | 4 | 440 | 83 | 112 | 0.179 | -0.189 | 0.086 | -0.058 | -0.028 |
|---|
| FLNA | | 50 | 20 | 1 | 14 | 0.081 | 0.107 | 0.148 | 0.268 | 0.126 |
|---|
| CDK1 | | 63 | 15 | 83 | 79 | 0.265 | -0.195 | 0.106 | 0.088 | 0.031 |
|---|
| PRELP | | 1 | 1195 | 179 | 247 | -0.187 | 0.123 | 0.072 | -0.011 | -0.030 |
|---|
| MMP3 | | 6 | 301 | 179 | 205 | 0.121 | 0.171 | 0.081 | 0.198 | 0.192 |
|---|
| MST4 | | 1 | 1195 | 179 | 247 | 0.106 | 0.044 | 0.147 | 0.027 | 0.228 |
|---|
| H2AFX | | 7 | 256 | 179 | 201 | 0.111 | -0.072 | 0.121 | 0.165 | -0.010 |
|---|
| GSK3B | | 79 | 8 | 179 | 169 | -0.130 | 0.292 | -0.129 | 0.291 | 0.057 |
|---|
| UIMC1 | | 6 | 301 | 179 | 205 | -0.054 | 0.226 | 0.031 | -0.005 | 0.189 |
|---|
| SERPINE1 | | 8 | 222 | 179 | 200 | 0.160 | 0.200 | 0.056 | 0.070 | 0.030 |
|---|
| SLC27A3 | | 1 | 1195 | 179 | 247 | -0.019 | -0.027 | 0.058 | undef | 0.028 |
|---|
| E2F2 | | 13 | 124 | 1 | 35 | 0.212 | -0.047 | 0.162 | -0.131 | -0.092 |
|---|
| LAMC2 | | 4 | 440 | 179 | 209 | -0.063 | 0.307 | -0.060 | -0.148 | 0.055 |
|---|
| GPT2 | | 1 | 1195 | 179 | 247 | 0.026 | -0.099 | undef | undef | undef |
|---|
| HERC2 | | 1 | 1195 | 179 | 247 | -0.193 | -0.018 | 0.050 | -0.100 | 0.174 |
|---|
| MCM10 | | 5 | 360 | 179 | 208 | 0.178 | -0.245 | 0.015 | undef | -0.063 |
|---|
| DDX11 | | 3 | 557 | 179 | 213 | 0.254 | -0.126 | -0.191 | -0.033 | -0.135 |
|---|
| GRB14 | | 24 | 62 | 179 | 181 | 0.113 | -0.129 | 0.143 | -0.098 | 0.138 |
|---|
| ATF7 | | 28 | 47 | 179 | 175 | 0.085 | 0.115 | -0.088 | 0.172 | -0.092 |
|---|
| C7orf16 | | 1 | 1195 | 179 | 247 | undef | 0.017 | 0.000 | 0.026 | -0.102 |
|---|
| RLF | | 2 | 743 | 179 | 219 | 0.158 | 0.178 | -0.013 | -0.043 | -0.046 |
|---|
| JUN | | 26 | 52 | 179 | 177 | 0.200 | 0.051 | 0.220 | undef | 0.200 |
|---|
| RB1 | | 31 | 43 | 1 | 22 | 0.013 | -0.051 | 0.057 | 0.100 | -0.082 |
|---|
| EN1 | | 10 | 167 | 179 | 194 | 0.196 | 0.024 | 0.011 | -0.016 | 0.102 |
|---|
| FGFR3 | | 9 | 196 | 179 | 195 | 0.160 | 0.071 | 0.018 | -0.050 | -0.111 |
|---|
| SPP1 | | 26 | 52 | 83 | 91 | 0.130 | 0.119 | 0.184 | 0.204 | 0.153 |
|---|
| GCHFR | | 1 | 1195 | 179 | 247 | 0.001 | -0.019 | -0.046 | 0.084 | 0.198 |
|---|
| MYC | | 72 | 10 | 1 | 8 | -0.101 | -0.169 | 0.188 | undef | -0.134 |
|---|
| GPRIN2 | | 16 | 104 | 179 | 190 | 0.084 | 0.078 | 0.012 | 0.054 | 0.114 |
|---|
| GHR | | 35 | 34 | 83 | 83 | -0.112 | 0.174 | 0.090 | 0.176 | 0.201 |
|---|
| JUNB | | 20 | 81 | 179 | 185 | 0.057 | 0.086 | 0.065 | 0.001 | -0.015 |
|---|
| PAK2 | | 26 | 52 | 179 | 177 | 0.014 | 0.161 | 0.081 | -0.044 | 0.062 |
|---|
| PRKG1 | | 3 | 557 | 179 | 213 | 0.035 | -0.125 | -0.074 | 0.183 | -0.095 |
|---|
| ARHGAP1 | | 6 | 301 | 179 | 205 | -0.167 | 0.297 | 0.001 | -0.032 | 0.251 |
|---|
| BCL2 | | 37 | 32 | 83 | 82 | -0.077 | -0.035 | 0.128 | -0.106 | 0.043 |
|---|
| ZRANB1 | | 1 | 1195 | 179 | 247 | 0.205 | undef | undef | undef | undef |
|---|
| GRIN2A | | 12 | 140 | 179 | 192 | -0.113 | -0.068 | 0.162 | 0.125 | undef |
|---|
| SP1 | | 72 | 10 | 83 | 77 | 0.222 | -0.254 | 0.239 | 0.020 | 0.082 |
|---|
| FGFR4 | | 21 | 73 | 179 | 183 | -0.011 | 0.188 | -0.089 | -0.018 | -0.049 |
|---|
| ERG | | 9 | 196 | 179 | 195 | -0.134 | -0.026 | 0.235 | -0.027 | 0.182 |
|---|
| GDPD3 | | 2 | 743 | 179 | 219 | 0.173 | -0.012 | 0.036 | undef | 0.163 |
|---|
| COL4A4 | | 6 | 301 | 83 | 105 | 0.102 | 0.155 | -0.039 | 0.295 | 0.068 |
|---|
| RIPK3 | | 19 | 85 | 179 | 186 | -0.014 | 0.040 | undef | 0.173 | undef |
|---|
| PIK3R1 | | 127 | 2 | 1 | 2 | -0.237 | 0.381 | 0.065 | undef | -0.002 |
|---|
| ITGA5 | | 26 | 52 | 179 | 177 | 0.031 | 0.192 | 0.125 | 0.133 | 0.202 |
|---|
| FOS | | 42 | 27 | 1 | 17 | -0.137 | 0.129 | 0.185 | -0.144 | 0.234 |
|---|
| XK | | 18 | 86 | 179 | 187 | 0.154 | -0.000 | 0.067 | -0.123 | -0.040 |
|---|
| MAP1B | | 69 | 12 | 1 | 9 | -0.123 | 0.263 | -0.107 | 0.304 | 0.100 |
|---|
| FGFR2 | | 7 | 256 | 179 | 201 | -0.024 | -0.001 | 0.129 | undef | 0.009 |
|---|
| PKN3 | | 18 | 86 | 179 | 187 | -0.181 | 0.009 | undef | 0.239 | undef |
|---|
| ACOX1 | | 9 | 196 | 1 | 44 | -0.209 | 0.122 | -0.104 | 0.252 | -0.094 |
|---|
| GRB7 | | 58 | 18 | 1 | 12 | 0.021 | 0.115 | -0.072 | 0.229 | 0.129 |
|---|
| GCH1 | | 1 | 1195 | 179 | 247 | 0.173 | -0.084 | -0.151 | 0.078 | -0.035 |
|---|
| VAPA | | 1 | 1195 | 179 | 247 | 0.070 | -0.088 | 0.030 | -0.075 | 0.292 |
|---|
| DHFR | | 4 | 440 | 179 | 209 | 0.019 | 0.029 | 0.232 | 0.129 | -0.050 |
|---|
| USP20 | | 1 | 1195 | 179 | 247 | -0.031 | 0.136 | -0.107 | -0.042 | -0.046 |
|---|
| PLD1 | | 17 | 95 | 1 | 29 | 0.132 | 0.033 | -0.158 | -0.062 | 0.123 |
|---|
| CDK2 | | 31 | 43 | 179 | 174 | 0.196 | -0.096 | 0.109 | 0.001 | 0.362 |
|---|
| ESR1 | | 4 | 440 | 179 | 209 | 0.026 | -0.002 | -0.053 | -0.149 | -0.062 |
|---|
| CDKN2A | | 60 | 17 | 1 | 11 | 0.263 | -0.113 | 0.111 | undef | -0.105 |
|---|
| STRN3 | | 1 | 1195 | 179 | 247 | 0.146 | 0.153 | 0.107 | undef | 0.194 |
|---|
| FOXA1 | | 27 | 50 | 179 | 176 | -0.072 | 0.071 | -0.015 | 0.214 | 0.005 |
|---|
GO Enrichment output for subnetwork 6610 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 |  | 9.025E-11 | 2.205E-07 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.229E-10 | 1.501E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.236E-10 | 2.635E-07 |
|---|
| S phase | GO:0051320 | | 7.891E-10 | 4.819E-07 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 4.474E-09 | 2.186E-06 |
|---|
| glycine biosynthetic process | GO:0006545 | | 5.562E-09 | 2.265E-06 |
|---|
| mitotic sister chromatid segregation | GO:0000070 | | 6.109E-08 | 2.132E-05 |
|---|
| sister chromatid segregation | GO:0000819 | | 7.256E-08 | 2.216E-05 |
|---|
| regulation of lipid kinase activity | GO:0043550 | | 7.68E-08 | 2.085E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.631E-07 | 3.984E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.803E-07 | 4.005E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.39E-10 | 3.345E-07 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.892E-10 | 2.277E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.28E-10 | 3.433E-07 |
|---|
| interphase | GO:0051325 | | 5.838E-10 | 3.511E-07 |
|---|
| S phase | GO:0051320 | | 1.08E-09 | 5.198E-07 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 6.485E-09 | 2.6E-06 |
|---|
| glycine biosynthetic process | GO:0006545 | | 7.162E-09 | 2.462E-06 |
|---|
| regulation of lipid kinase activity | GO:0043550 | | 4.965E-08 | 1.493E-05 |
|---|
| mitotic sister chromatid segregation | GO:0000070 | | 8.821E-08 | 2.358E-05 |
|---|
| sister chromatid segregation | GO:0000819 | | 1.047E-07 | 2.52E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.019E-07 | 4.415E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 8.137E-10 | 1.872E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.215E-08 | 1.397E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 2.231E-08 | 1.71E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.034E-08 | 1.745E-05 |
|---|
| interphase | GO:0051325 | | 3.719E-08 | 1.711E-05 |
|---|
| regulation of lipid kinase activity | GO:0043550 | | 1.393E-07 | 5.339E-05 |
|---|
| S phase | GO:0051320 | | 2.768E-07 | 9.096E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.61E-07 | 1.038E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.078E-07 | 1.042E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 5.799E-07 | 1.334E-04 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.194E-06 | 2.497E-04 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| peptidyl-amino acid modification | GO:0018193 | | 3.958E-07 | 7.295E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 7.974E-07 | 7.348E-04 |
|---|
| regulation of mitotic cell cycle | GO:0007346 | | 1.176E-06 | 7.223E-04 |
|---|
| memory | GO:0007613 | | 5.05E-06 | 2.327E-03 |
|---|
| cell junction assembly | GO:0034329 | | 8.661E-06 | 3.193E-03 |
|---|
| pigmentation | GO:0043473 | | 8.661E-06 | 2.66E-03 |
|---|
| regulation of lipid kinase activity | GO:0043550 | | 1.004E-05 | 2.644E-03 |
|---|
| focal adhesion formation | GO:0048041 | | 1.004E-05 | 2.314E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 1.004E-05 | 2.057E-03 |
|---|
| nitric oxide metabolic process | GO:0046209 | | 1.004E-05 | 1.851E-03 |
|---|
| lung development | GO:0030324 | | 1.065E-05 | 1.784E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 8.137E-10 | 1.872E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.215E-08 | 1.397E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 2.231E-08 | 1.71E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.034E-08 | 1.745E-05 |
|---|
| interphase | GO:0051325 | | 3.719E-08 | 1.711E-05 |
|---|
| regulation of lipid kinase activity | GO:0043550 | | 1.393E-07 | 5.339E-05 |
|---|
| S phase | GO:0051320 | | 2.768E-07 | 9.096E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.61E-07 | 1.038E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.078E-07 | 1.042E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 5.799E-07 | 1.334E-04 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.194E-06 | 2.497E-04 |
|---|
