Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6558

score

Expression data for subnetwork 6558 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6558 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
ARHGAP26		21	73	457	438	-0.023	0.171	-0.222	0.015	-0.348
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
ADD1		8	222	366	373	-0.085	0.116	0.035	undef	-0.098
NQO1		21	73	366	354	-0.115	0.069	-0.189	0.321	0.118
EGF		12	140	638	620	-0.212	0.182	-0.276	-0.060	0.005
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
PTP4A3		9	196	412	411	0.137	-0.196	0.085	undef	-0.004
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
PLAU		12	140	179	192	0.187	0.153	0.141	0.072	0.192
GLIS2		1	1195	1674	1690	-0.027	0.190	undef	undef	undef
LIN7A		6	301	366	377	-0.189	-0.074	0.108	0.065	-0.146
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
ENO1		3	557	1437	1418	0.054	0.211	0.010	0.017	0.178
CDK6		16	104	318	314	-0.229	0.107	-0.028	-0.118	0.104
DSC3		1	1195	1674	1690	-0.023	0.014	0.324	-0.201	0.147
PARP1		29	45	83	84	-0.036	-0.162	-0.089	0.238	0.012
PPARG		7	256	179	201	-0.119	0.011	0.105	0.059	0.039
ATXN1		17	95	1	29	0.026	0.192	0.175	0.125	0.163
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
RBBP8		1	1195	1674	1690	-0.098	0.013	0.127	-0.115	0.070
H2AFX		7	256	179	201	0.111	-0.072	0.121	0.165	-0.010
UIMC1		6	301	179	205	-0.054	0.226	0.031	-0.005	0.189
SERPINE1		8	222	179	200	0.160	0.200	0.056	0.070	0.030
MPP3		4	440	1650	1612	-0.095	-0.007	-0.098	0.087	-0.046
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
PSPH		20	81	366	356	0.240	-0.019	-0.102	0.358	0.025
HIVEP1		6	301	764	758	-0.199	0.069	0.000	0.193	-0.042
FABP4		6	301	236	239	-0.036	-0.028	0.227	0.072	0.107
POU3F2		17	95	928	891	0.135	0.114	0.155	0.253	0.040
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
INPPL1		6	301	141	152	-0.122	0.072	-0.087	0.174	0.156
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
ARHGEF7		25	59	83	92	-0.074	-0.061	0.208	0.028	0.015
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
PKN1		5	360	1674	1634	0.150	-0.143	-0.011	0.084	-0.002
SERPINB2		2	743	764	779	0.152	-0.030	0.034	-0.168	-0.096
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
SC4MOL		1	1195	1674	1690	-0.151	0.202	undef	0.172	undef
C17orf81		2	743	1674	1659	-0.115	-0.013	-0.201	-0.047	0.356
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GPATCH8		8	222	614	599	-0.143	0.014	0.019	-0.070	0.061
PTPN11		20	81	83	94	-0.152	0.014	0.066	0.304	0.089
INSM1		23	66	570	545	0.135	-0.184	-0.188	0.237	-0.032
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
IGF2BP1		15	111	366	359	0.135	-0.036	undef	0.190	undef
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
SKP2		29	45	1	23	0.092	-0.043	0.237	undef	-0.009
ADRB2		1	1195	1674	1690	-0.001	-0.008	0.045	0.013	0.037
NR2F1		25	59	83	92	-0.252	0.113	0.133	-0.116	0.207
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
TCF7L2		17	95	366	358	-0.021	0.143	0.280	undef	0.101
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
PKN3		18	86	179	187	-0.181	0.009	undef	0.239	undef
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
RAB31		2	743	1650	1635	0.028	0.073	0.067	0.018	0.338
VWF		5	360	525	518	-0.091	0.072	0.152	0.127	0.100

GO Enrichment output for subnetwork 6558 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
carbohydrate homeostasis	GO:0033500		2.82E-11	6.889E-08
positive regulation of MAP kinase activity	GO:0043406		7.441E-11	9.09E-08
organ growth	GO:0035265		8.171E-11	6.654E-08
cell cycle checkpoint	GO:0000075		1.501E-10	9.165E-08
positive regulation of hormone secretion	GO:0046887		5.178E-10	2.53E-07
DNA damage checkpoint	GO:0000077		6.142E-10	2.501E-07
DNA integrity checkpoint	GO:0031570		1.137E-09	3.969E-07
Wnt receptor signaling pathway through beta-catenin	GO:0060070		1.767E-09	5.396E-07
activation of MAPK activity	GO:0000187		2.635E-09	7.153E-07
interphase of mitotic cell cycle	GO:0051329		2.805E-09	6.853E-07
regulation of insulin secretion	GO:0050796		3.292E-09	7.312E-07

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
carbohydrate homeostasis	GO:0033500		3.526E-11	8.483E-08
organ growth	GO:0035265		1.091E-10	1.313E-07
positive regulation of MAP kinase activity	GO:0043406		1.281E-10	1.027E-07
cell cycle checkpoint	GO:0000075		1.891E-10	1.137E-07
DNA damage checkpoint	GO:0000077		5.842E-10	2.811E-07
positive regulation of hormone secretion	GO:0046887		7.293E-10	2.925E-07
DNA integrity checkpoint	GO:0031570		1.125E-09	3.868E-07
Wnt receptor signaling pathway through beta-catenin	GO:0060070		1.292E-09	3.884E-07
interphase of mitotic cell cycle	GO:0051329		3.461E-09	9.253E-07
activation of MAPK activity	GO:0000187		4.096E-09	9.856E-07
interphase	GO:0051325		4.569E-09	9.994E-07

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of MAP kinase activity	GO:0043406		1.621E-10	3.728E-07
organ growth	GO:0035265		2.05E-10	2.358E-07
carbohydrate homeostasis	GO:0033500		1.365E-09	1.046E-06
activation of MAPK activity	GO:0000187		3.724E-09	2.141E-06
cell cycle checkpoint	GO:0000075		7.239E-09	3.33E-06
negative regulation of peptide secretion	GO:0002792		7.943E-09	3.045E-06
negative regulation of transport	GO:0051051		2.096E-08	6.888E-06
cellular response to hormone stimulus	GO:0032870		2.338E-08	6.721E-06
regulation of protein export from nucleus	GO:0046825		2.371E-08	6.059E-06
regulation of multicellular organism growth	GO:0040014		2.917E-08	6.71E-06
DNA damage checkpoint	GO:0000077		3.904E-08	8.162E-06

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
cell cycle checkpoint	GO:0000075		2.745E-07	5.06E-04
positive regulation of MAP kinase activity	GO:0043406		8.195E-07	7.551E-04
interphase of mitotic cell cycle	GO:0051329		1.045E-06	6.417E-04
positive regulation of protein kinase activity	GO:0045860		1.563E-06	7.202E-04
positive regulation of transferase activity	GO:0051347		1.828E-06	6.738E-04
negative regulation of cell growth	GO:0030308		2.098E-06	6.445E-04
negative regulation of cell size	GO:0045792		2.46E-06	6.478E-04
response to peptide hormone stimulus	GO:0043434		2.87E-06	6.611E-04
T cell lineage commitment	GO:0002360		2.96E-06	6.062E-04
positive regulation of cell migration	GO:0030335		3.849E-06	7.093E-04
response to hormone stimulus	GO:0009725		4.334E-06	7.262E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of MAP kinase activity	GO:0043406		1.621E-10	3.728E-07
organ growth	GO:0035265		2.05E-10	2.358E-07
carbohydrate homeostasis	GO:0033500		1.365E-09	1.046E-06
activation of MAPK activity	GO:0000187		3.724E-09	2.141E-06
cell cycle checkpoint	GO:0000075		7.239E-09	3.33E-06
negative regulation of peptide secretion	GO:0002792		7.943E-09	3.045E-06
negative regulation of transport	GO:0051051		2.096E-08	6.888E-06
cellular response to hormone stimulus	GO:0032870		2.338E-08	6.721E-06
regulation of protein export from nucleus	GO:0046825		2.371E-08	6.059E-06
regulation of multicellular organism growth	GO:0040014		2.917E-08	6.71E-06
DNA damage checkpoint	GO:0000077		3.904E-08	8.162E-06