Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6390

score

Expression data for subnetwork 6390 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6390 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
TEK		18	86	83	95	-0.149	-0.049	0.174	0.015	0.113
NUP188		8	222	1116	1079	-0.187	0.094	0.058	0.161	-0.070
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
POLR1A		6	301	457	452	-0.193	-0.066	undef	0.093	undef
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
THBS3		1	1195	2207	2211	-0.030	0.086	0.270	0.186	-0.005
CD7		2	743	1102	1102	0.020	-0.151	-0.165	0.027	-0.073
EIF1B		8	222	1576	1529	0.149	0.075	0.332	-0.017	-0.070
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
ETFB		2	743	2003	1980	-0.037	0.058	0.081	-0.105	-0.065
RPL23A		5	360	842	828	0.208	-0.007	0.024	-0.242	0.055
DST		22	69	1	25	-0.094	0.343	0.065	-0.062	0.194
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
PIAS1		2	743	2090	2082	-0.270	0.096	0.157	-0.213	-0.083
EIF2AK2		9	196	648	629	0.023	-0.022	-0.134	0.096	-0.303
CDH1		37	32	296	278	-0.227	0.187	-0.236	0.137	-0.024
HARS2		3	557	1268	1255	0.049	0.360	-0.168	undef	-0.199
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
POLE3		17	95	141	138	-0.083	-0.033	0.231	0.096	0.011
RRAS2		7	256	1681	1633	0.155	0.076	0.289	0.044	0.031
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
DLGAP1		2	743	2207	2182	0.103	0.078	0.102	-0.072	-0.159
RPL35		8	222	1323	1280	0.108	-0.012	0.370	-0.145	-0.220
CSRP1		2	743	1975	1953	-0.053	0.224	0.088	0.049	0.080
THBS2		3	557	1903	1868	0.094	0.221	0.060	0.241	0.154
PBK		2	743	2207	2182	0.163	-0.164	0.107	-0.067	-0.095
RIPK3		19	85	179	186	-0.014	0.040	undef	0.173	undef
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
FLNA		50	20	1	14	0.081	0.107	0.148	0.268	0.126
PSMD4		11	148	296	282	0.285	-0.243	-0.043	0.087	-0.045
SUPT5H		6	301	1323	1281	-0.085	0.007	-0.298	0.002	-0.068
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
GADD45A		11	148	1351	1308	-0.057	0.076	-0.099	0.109	0.093
PSMD8		1	1195	2207	2211	0.052	-0.027	-0.080	0.123	0.027
KYNU		1	1195	2207	2211	-0.245	0.090	-0.294	0.107	0.047
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
TRAF3IP1		9	196	83	99	-0.113	-0.063	-0.088	0.276	undef
TUBB2B		13	124	141	141	-0.036	0.304	0.045	0.187	0.139
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
TIE1		18	86	366	357	-0.108	0.005	0.141	-0.108	0.252
EGFL7		1	1195	2207	2211	0.004	0.087	0.128	undef	0.175
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
NRP1		8	222	1222	1186	-0.043	0.025	0.201	0.029	0.071
G3BP1		7	256	1116	1082	0.060	-0.077	-0.017	0.155	-0.004
CSRP2		1	1195	2207	2211	-0.067	-0.015	0.182	0.194	0.046
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298

GO Enrichment output for subnetwork 6390 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		2.736E-07	6.685E-04
regulation of granulocyte macrophage colony-stimulating factor production	GO:0032645		3.459E-07	4.226E-04
T cell activation	GO:0042110		3.685E-07	3.001E-04
regulation of nucleocytoplasmic transport	GO:0046822		4.363E-07	2.665E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		5.186E-07	2.534E-04
response to vitamin	GO:0033273		5.186E-07	2.112E-04
positive regulation of T-helper 1 cell differentiation	GO:0045627		6.902E-07	2.409E-04
reciprocal meiotic recombination	GO:0007131		7.791E-07	2.379E-04
positive regulation of intracellular transport	GO:0032388		7.791E-07	2.115E-04
interphase of mitotic cell cycle	GO:0051329		9.193E-07	2.246E-04
regulation of protein export from nucleus	GO:0046825		1.205E-06	2.676E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		3.592E-07	8.642E-04
T cell activation	GO:0042110		4.081E-07	4.91E-04
regulation of granulocyte macrophage colony-stimulating factor production	GO:0032645		4.097E-07	3.286E-04
regulation of nucleocytoplasmic transport	GO:0046822		5.724E-07	3.443E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		6.473E-07	3.115E-04
response to vitamin	GO:0033273		6.473E-07	2.596E-04
reciprocal meiotic recombination	GO:0007131		7.975E-07	2.741E-04
positive regulation of T-helper 1 cell differentiation	GO:0045627		8.173E-07	2.458E-04
positive regulation of intracellular transport	GO:0032388		9.721E-07	2.599E-04
interphase of mitotic cell cycle	GO:0051329		1.051E-06	2.528E-04
interphase	GO:0051325		1.262E-06	2.76E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		9.289E-07	2.136E-03
regulation of granulocyte macrophage colony-stimulating factor production	GO:0032645		1.31E-06	1.506E-03
positive regulation of nucleocytoplasmic transport	GO:0046824		1.485E-06	1.139E-03
regulation of nucleocytoplasmic transport	GO:0046822		2.366E-06	1.36E-03
positive regulation of intracellular transport	GO:0032388		2.4E-06	1.104E-03
regulation of protein export from nucleus	GO:0046825		2.61E-06	1E-03
ER overload response	GO:0006983		2.61E-06	8.574E-04
positive regulation of T-helper 1 cell differentiation	GO:0045627		2.61E-06	7.503E-04
response to vitamin	GO:0033273		2.988E-06	7.635E-04
T cell activation	GO:0042110		3.233E-06	7.437E-04
response to endoplasmic reticulum stress	GO:0034976		3.676E-06	7.686E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		3.635E-07	6.7E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		4.229E-07	3.897E-04
cell cycle arrest	GO:0007050		4.754E-07	2.92E-04
regulation of nucleocytoplasmic transport	GO:0046822		5.473E-07	2.522E-04
response to endoplasmic reticulum stress	GO:0034976		9.081E-07	3.347E-04
regulation of intracellular transport	GO:0032386		1.131E-06	3.474E-04
response to vitamin	GO:0033273		1.718E-06	4.523E-04
ER-nuclear signaling pathway	GO:0006984		1.718E-06	3.958E-04
positive regulation of transcription factor import into nucleus	GO:0042993		4.49E-06	9.195E-04
ER overload response	GO:0006983		4.49E-06	8.275E-04
T cell activation	GO:0042110		1.292E-05	2.164E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		9.289E-07	2.136E-03
regulation of granulocyte macrophage colony-stimulating factor production	GO:0032645		1.31E-06	1.506E-03
positive regulation of nucleocytoplasmic transport	GO:0046824		1.485E-06	1.139E-03
regulation of nucleocytoplasmic transport	GO:0046822		2.366E-06	1.36E-03
positive regulation of intracellular transport	GO:0032388		2.4E-06	1.104E-03
regulation of protein export from nucleus	GO:0046825		2.61E-06	1E-03
ER overload response	GO:0006983		2.61E-06	8.574E-04
positive regulation of T-helper 1 cell differentiation	GO:0045627		2.61E-06	7.503E-04
response to vitamin	GO:0033273		2.988E-06	7.635E-04
T cell activation	GO:0042110		3.233E-06	7.437E-04
response to endoplasmic reticulum stress	GO:0034976		3.676E-06	7.686E-04