Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6388

score

Expression data for subnetwork 6388 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6388 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
CDKN2B		7	256	236	237	0.066	0.050	-0.028	0.039	0.153
CCNC		5	360	570	562	0.085	-0.053	undef	0.028	undef
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
NUP188		8	222	1116	1079	-0.187	0.094	0.058	0.161	-0.070
PTHLH		2	743	478	490	-0.070	0.111	0.047	-0.033	-0.091
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
SLA		2	743	1938	1922	0.138	-0.195	-0.058	undef	-0.012
RND1		6	301	236	239	-0.046	0.085	0.022	0.082	0.113
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
FGFR3		9	196	179	195	0.160	0.071	0.018	-0.050	-0.111
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
TLR3		1	1195	2040	2044	0.196	-0.111	-0.089	-0.063	-0.103
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GPRIN2		16	104	179	190	0.084	0.078	0.012	0.054	0.114
BOP1		1	1195	2040	2044	0.045	-0.127	0.088	undef	-0.126
ADAM15		3	557	1803	1777	-0.048	-0.078	-0.208	0.172	-0.048
INSM1		23	66	570	545	0.135	-0.184	-0.188	0.237	-0.032
ZNF148		1	1195	2040	2044	-0.001	0.161	0.077	undef	0.161
IGF2BP1		15	111	366	359	0.135	-0.036	undef	0.190	undef
CCND2		5	360	1492	1453	0.022	-0.011	-0.072	-0.153	-0.029
MYT1		1	1195	2040	2044	-0.070	-0.100	0.206	undef	-0.039
NR2C1		8	222	727	703	0.121	0.039	0.119	-0.197	-0.026
FTSJ3		1	1195	2040	2044	-0.016	0.102	0.015	0.027	0.019
MSH6		12	140	1	36	0.052	-0.057	0.051	0.126	0.064
TLE2		4	440	806	790	0.010	0.052	0.202	undef	0.093
TUBB3		7	256	764	756	0.078	0.130	0.073	0.207	-0.079
MDFI		17	95	236	226	-0.075	-0.001	0.177	0.169	-0.112
PLK1		11	148	236	232	0.142	-0.143	0.094	-0.192	-0.163
ERG		9	196	179	195	-0.134	-0.026	0.235	-0.027	0.182
GABPA		23	66	696	665	0.033	-0.183	0.066	0.141	-0.161
ZC4H2		17	95	570	546	0.065	0.061	0.304	-0.072	0.059
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
ATF3		17	95	179	189	0.225	-0.021	0.000	undef	-0.039
CTSK		1	1195	2040	2044	0.028	0.032	-0.018	0.135	0.118
C13orf34		3	557	1165	1151	0.059	0.057	0.007	undef	-0.147
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
IRS2		3	557	1102	1098	-0.006	0.043	0.054	-0.256	0.125
NSA2		4	440	806	790	0.103	0.097	0.132	-0.026	0.006
RNF6		4	440	590	585	0.109	-0.128	0.002	0.041	-0.018
PDCD6		10	167	1	40	0.091	-0.060	undef	undef	undef
SLC24A1		4	440	1323	1295	-0.068	0.109	0.178	-0.020	0.056
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
MAP4		2	743	1437	1433	-0.115	0.217	0.221	0.086	0.268
NEK9		2	743	1659	1643	-0.074	0.037	0.211	undef	0.056
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
GSPT1		2	743	1975	1953	0.123	-0.024	0.036	0.037	-0.040
TIE1		18	86	366	357	-0.108	0.005	0.141	-0.108	0.252
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
E2F2		13	124	1	35	0.212	-0.047	0.162	-0.131	-0.092
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
SIX2		2	743	727	734	-0.001	-0.092	-0.196	0.161	0.137
PSPH		20	81	366	356	0.240	-0.019	-0.102	0.358	0.025

GO Enrichment output for subnetwork 6388 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.67E-14	4.079E-11
G1/S transition of mitotic cell cycle	GO:0000082		2.346E-11	2.865E-08
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.427E-10	1.162E-07
cell cycle checkpoint	GO:0000075		2.634E-08	1.609E-05
negative regulation of phosphorylation	GO:0042326		5.688E-08	2.779E-05
G2/M transition of mitotic cell cycle	GO:0000086		7.086E-08	2.885E-05
negative regulation of phosphorus metabolic process	GO:0010563		8.742E-08	3.051E-05
negative regulation of epithelial cell proliferation	GO:0050680		1.249E-06	3.813E-04
regulation of epithelial cell proliferation	GO:0050678		1.519E-06	4.125E-04
apoptotic mitochondrial changes	GO:0008637		1.555E-06	3.8E-04
L-serine biosynthetic process	GO:0006564		1.58E-06	3.509E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.478E-14	5.961E-11
interphase	GO:0051325		3.639E-14	4.378E-11
G1/S transition of mitotic cell cycle	GO:0000082		4.005E-11	3.212E-08
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.43E-10	1.461E-07
cell cycle checkpoint	GO:0000075		3.421E-08	1.646E-05
negative regulation of phosphorylation	GO:0042326		7.997E-08	3.207E-05
G2/M transition of mitotic cell cycle	GO:0000086		9.959E-08	3.423E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.228E-07	3.695E-05
cell cycle arrest	GO:0007050		4.503E-07	1.204E-04
L-serine biosynthetic process	GO:0006564		9.765E-07	2.349E-04
negative regulation of epithelial cell proliferation	GO:0050680		1.642E-06	3.592E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		4.458E-12	1.025E-08
interphase	GO:0051325		5.773E-12	6.639E-09
G1/S transition of mitotic cell cycle	GO:0000082		1.834E-10	1.406E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.448E-08	1.408E-05
negative regulation of phosphorylation	GO:0042326		2.41E-07	1.108E-04
negative regulation of phosphorus metabolic process	GO:0010563		3.768E-07	1.444E-04
cell cycle arrest	GO:0007050		9.534E-07	3.133E-04
cell cycle checkpoint	GO:0000075		2.566E-06	7.376E-04
apoptotic mitochondrial changes	GO:0008637		3.799E-06	9.71E-04
regulation of epithelial cell proliferation	GO:0050678		3.814E-06	8.773E-04
positive regulation of protein ubiquitination	GO:0031398		4.399E-06	9.199E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.686E-10	3.108E-07
G1/S transition of mitotic cell cycle	GO:0000082		6.498E-08	5.988E-05
G2/M transition of mitotic cell cycle	GO:0000086		4.89E-07	3.004E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.818E-07	4.523E-04
negative regulation of cell differentiation	GO:0045596		1.246E-06	4.593E-04
regulation of cell size	GO:0008361		1.361E-06	4.181E-04
cell cycle checkpoint	GO:0000075		2.214E-06	5.829E-04
positive regulation of protein kinase activity	GO:0045860		5.452E-06	1.256E-03
cell cycle arrest	GO:0007050		5.461E-06	1.118E-03
positive regulation of transferase activity	GO:0051347		6.236E-06	1.149E-03
regulation of epithelial cell proliferation	GO:0050678		1.528E-05	2.559E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		4.458E-12	1.025E-08
interphase	GO:0051325		5.773E-12	6.639E-09
G1/S transition of mitotic cell cycle	GO:0000082		1.834E-10	1.406E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.448E-08	1.408E-05
negative regulation of phosphorylation	GO:0042326		2.41E-07	1.108E-04
negative regulation of phosphorus metabolic process	GO:0010563		3.768E-07	1.444E-04
cell cycle arrest	GO:0007050		9.534E-07	3.133E-04
cell cycle checkpoint	GO:0000075		2.566E-06	7.376E-04
apoptotic mitochondrial changes	GO:0008637		3.799E-06	9.71E-04
regulation of epithelial cell proliferation	GO:0050678		3.814E-06	8.773E-04
positive regulation of protein ubiquitination	GO:0031398		4.399E-06	9.199E-04