Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6111

score

Expression data for subnetwork 6111 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6111 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CDC42EP3		2	743	2284	2253	-0.159	0.338	-0.073	undef	0.220
RGS4		4	440	842	831	0.022	0.160	-0.006	undef	0.371
PAX6		22	69	318	312	0.259	-0.003	0.112	undef	0.168
DNM3		1	1195	2284	2285	-0.053	-0.070	-0.040	undef	0.343
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
MRAS		1	1195	2284	2285	-0.039	-0.012	0.068	-0.319	-0.119
NDUFAB1		2	743	1413	1410	0.230	-0.040	0.162	-0.013	-0.051
YWHAE		4	440	179	209	-0.018	0.112	0.279	-0.094	0.014
LY6D		1	1195	2284	2285	0.177	0.008	-0.101	undef	0.092
EIF1B		8	222	1576	1529	0.149	0.075	0.332	-0.017	-0.070
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
CDK14		7	256	179	201	-0.151	0.011	-0.071	0.212	0.107
CDC42		26	52	179	177	0.047	0.242	-0.027	0.040	-0.042
TACC2		1	1195	2284	2285	-0.073	0.122	0.181	undef	0.180
PPP2R2B		39	29	179	173	0.124	-0.019	0.029	0.116	-0.073
ETV1		10	167	1	40	0.046	0.054	-0.065	0.014	0.141
ACACA		3	557	1413	1407	-0.275	-0.103	0.056	undef	-0.080
CYB5R2		1	1195	2284	2285	0.164	0.230	0.006	-0.041	0.016
R3HCC1		1	1195	2284	2285	0.045	0.058	0.158	0.155	-0.025
PDHB		13	124	525	503	0.056	0.017	0.197	-0.205	0.193
AGPAT2		3	557	412	430	0.167	-0.015	0.123	0.042	-0.076
NGFRAP1		3	557	991	982	-0.044	0.005	0.252	-0.001	0.109
ARHGEF6		10	167	525	507	-0.068	-0.120	0.166	undef	-0.115
ANP32E		2	743	1247	1238	0.166	-0.139	0.191	undef	0.118
PDCD11		2	743	1576	1561	-0.019	0.075	0.091	undef	0.114
NRGN		1	1195	2284	2285	0.131	-0.132	0.141	-0.126	0.004
PARD3		6	301	366	377	0.030	-0.006	-0.052	0.040	-0.090
BMPR1B		2	743	1709	1695	-0.037	0.078	0.163	-0.003	0.146
PRKAA2		6	301	1165	1138	-0.204	0.148	0.086	0.250	-0.078
MINK1		2	743	2141	2117	-0.210	-0.166	-0.092	0.103	-0.117
PLSCR4		13	124	318	316	-0.069	0.140	0.231	0.212	0.212
KAT2B		13	124	318	316	0.102	-0.157	-0.091	0.136	-0.087
CHRND		3	557	318	341	0.114	-0.031	-0.047	0.154	-0.031
ARHGEF7		25	59	83	92	-0.074	-0.061	0.208	0.028	0.015
RALGDS		5	360	2024	1972	-0.011	0.199	0.033	undef	-0.009
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
CALR		4	440	525	520	-0.105	0.002	-0.061	-0.094	-0.075
BMP2		11	148	525	505	-0.011	0.097	0.148	-0.114	-0.069
RASSF8		5	360	296	310	-0.078	0.121	0.174	0.114	-0.092
EN1		10	167	179	194	0.196	0.024	0.011	-0.016	0.102
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
PAK2		26	52	179	177	0.014	0.161	0.081	-0.044	0.062
BRD7		23	66	457	437	-0.090	0.019	-0.188	undef	-0.086
JAM2		2	743	1604	1588	-0.047	0.075	0.241	-0.215	0.055
RRAS2		7	256	1681	1633	0.155	0.076	0.289	0.044	0.031
MSH6		12	140	1	36	0.052	-0.057	0.051	0.126	0.064
CCDC88A		1	1195	2284	2285	-0.072	-0.090	0.097	-0.041	0.019
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
DLGAP1		2	743	2207	2182	0.103	0.078	0.102	-0.072	-0.159
GREM1		9	196	525	508	-0.073	0.200	0.028	0.225	0.261
MYO10		3	557	570	572	-0.159	0.121	-0.191	0.074	0.066
CALM1		6	301	614	602	0.014	0.021	0.192	0.221	0.247
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
SKP2		29	45	1	23	0.092	-0.043	0.237	undef	-0.009
FHL2		21	73	658	630	0.143	0.239	-0.033	0.107	0.294
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
GRB2		13	124	318	316	-0.040	-0.159	-0.036	-0.028	-0.024
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
AGT		4	440	1203	1184	-0.020	-0.101	-0.043	0.255	0.064
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
UMPS		3	557	842	834	0.229	0.047	0.080	-0.098	0.021
SFN		25	59	478	454	0.141	0.270	0.023	-0.102	0.101

GO Enrichment output for subnetwork 6111 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
filopodium assembly	GO:0046847		1.315E-06	3.212E-03
microspike assembly	GO:0030035		1.684E-06	2.057E-03
establishment or maintenance of cell polarity	GO:0007163		1.824E-06	1.485E-03
nuclear migration	GO:0007097		2.361E-06	1.442E-03
positive regulation of pseudopodium assembly	GO:0031274		2.361E-06	1.154E-03
N-terminal protein amino acid acetylation	GO:0006474		4.117E-06	1.676E-03
regulation of lipid kinase activity	GO:0043550		6.563E-06	2.29E-03
phosphoinositide 3-kinase cascade	GO:0014065		6.563E-06	2.004E-03
establishment of nucleus localization	GO:0040023		6.563E-06	1.781E-03
regulation of DNA metabolic process	GO:0051052		9.208E-06	2.25E-03
insulin receptor signaling pathway	GO:0008286		9.327E-06	2.071E-03

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
filopodium assembly	GO:0046847		1.232E-06	2.964E-03
establishment or maintenance of cell polarity	GO:0007163		1.376E-06	1.655E-03
microspike assembly	GO:0030035		1.604E-06	1.287E-03
nuclear migration	GO:0007097		2.748E-06	1.653E-03
positive regulation of pseudopodium assembly	GO:0031274		2.748E-06	1.322E-03
regulation of lipid kinase activity	GO:0043550		4.79E-06	1.921E-03
N-terminal protein amino acid acetylation	GO:0006474		4.79E-06	1.646E-03
macrophage differentiation	GO:0030225		4.79E-06	1.441E-03
phosphoinositide 3-kinase cascade	GO:0014065		7.635E-06	2.041E-03
establishment of nucleus localization	GO:0040023		7.635E-06	1.837E-03
insulin receptor signaling pathway	GO:0008286		9.716E-06	2.125E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
filopodium assembly	GO:0046847		6.94E-07	1.596E-03
microspike assembly	GO:0030035		1.035E-06	1.191E-03
nuclear migration	GO:0007097		3.202E-06	2.455E-03
positive regulation of pseudopodium assembly	GO:0031274		3.202E-06	1.841E-03
establishment or maintenance of cell polarity	GO:0007163		3.464E-06	1.593E-03
N-terminal protein amino acid acetylation	GO:0006474		6.371E-06	2.442E-03
macrophage differentiation	GO:0030225		6.371E-06	2.093E-03
regulation of lipid kinase activity	GO:0043550		1.109E-05	3.189E-03
establishment of nucleus localization	GO:0040023		1.109E-05	2.835E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		1.766E-05	4.062E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.766E-05	3.693E-03

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regionalization	GO:0003002		1.75E-06	3.225E-03
dorsal/ventral pattern formation	GO:0009953		2.89E-06	2.663E-03
positive regulation of growth	GO:0045927		6.499E-06	3.993E-03
positive regulation of transferase activity	GO:0051347		7.33E-06	3.377E-03
pattern specification process	GO:0007389		1.075E-05	3.963E-03
protein amino acid autophosphorylation	GO:0046777		1.473E-05	4.526E-03
hindbrain development	GO:0030902		2.488E-05	6.552E-03
proximal/distal pattern formation	GO:0009954		2.488E-05	5.733E-03
negative regulation of translation	GO:0017148		3.305E-05	6.768E-03
regulation of cell migration	GO:0030334		3.91E-05	7.207E-03
negative regulation of signal transduction	GO:0009968		3.91E-05	6.552E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
filopodium assembly	GO:0046847		6.94E-07	1.596E-03
microspike assembly	GO:0030035		1.035E-06	1.191E-03
nuclear migration	GO:0007097		3.202E-06	2.455E-03
positive regulation of pseudopodium assembly	GO:0031274		3.202E-06	1.841E-03
establishment or maintenance of cell polarity	GO:0007163		3.464E-06	1.593E-03
N-terminal protein amino acid acetylation	GO:0006474		6.371E-06	2.442E-03
macrophage differentiation	GO:0030225		6.371E-06	2.093E-03
regulation of lipid kinase activity	GO:0043550		1.109E-05	3.189E-03
establishment of nucleus localization	GO:0040023		1.109E-05	2.835E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		1.766E-05	4.062E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.766E-05	3.693E-03