Study VanDeVijver-ER-neg

Study informations

122 subnetworks in total page | file

1481 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 605

score

DatasetScoreP-val 1P-val 2P-val 3Fisher Score
Desmedt0.28231.169e-027.800e-043.687e-013.362e-06
IPC0.42792.106e-017.598e-029.050e-011.448e-02
Loi0.43832.980e-040.000e+007.536e-020.000e+00
Schmidt0.63280.000e+000.000e+005.893e-020.000e+00
Wang0.23991.490e-021.004e-013.103e-014.641e-04

Expression data for subnetwork 605 in each dataset

Desmedt | IPC | Loi | Schmidt | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 605 in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPCLoiSchmidtWang
PTK6PTK6 on ITI PTK6 on NCBI23912062200.029-0.0100.204-0.3430.213
RGS4RGS4 on ITI RGS4 on NCBI326557710.1440.0220.160-0.0060.371
SIGIRRSIGIRR on ITI SIGIRR on NCBI16522062300.0270.1550.0050.057-0.004
CASP3CASP3 on ITI CASP3 on NCBI4198129130-0.0150.234-0.032-0.142-0.084
C4orf41C4orf41 on ITI C4orf41 on NCBI16522062300.0450.1290.0340.0620.053
MFAP5MFAP5 on ITI MFAP5 on NCBI16522062300.2220.1950.0360.0400.142
NRG2NRG2 on ITI NRG2 on NCBI16522062300.011-0.0880.050-0.095-0.005
TUBB6TUBB6 on ITI TUBB6 on NCBI16522062300.0480.0450.1140.1870.165
CDKN1ACDKN1A on ITI CDKN1A on NCBI564130.0750.0640.2540.0300.082
KCTD5KCTD5 on ITI KCTD5 on NCBI1652206230-0.143-0.038-0.128-0.1430.060
CDK3CDK3 on ITI CDK3 on NCBI5148129129-0.151-0.0760.189-0.0410.082
PPP2R1BPPP2R1B on ITI PPP2R1B on NCBI1652206230-0.0490.0420.002-0.0020.112
RCN1RCN1 on ITI RCN1 on NCBI1652206230-0.0960.0760.109-0.012-0.042
ABL2ABL2 on ITI ABL2 on NCBI16522062300.1930.0330.068-0.1350.018
TLR3TLR3 on ITI TLR3 on NCBI23912062200.0810.196-0.111-0.089-0.103
LIN7BLIN7B on ITI LIN7B on NCBI2391206220-0.0650.047-0.123-0.141-0.147
CDC25BCDC25B on ITI CDC25B on NCBI23912062200.025-0.054-0.075-0.0370.009
TLR5TLR5 on ITI TLR5 on NCBI23912062200.165-0.0560.111-0.1760.144
CDK6CDK6 on ITI CDK6 on NCBI25191100.156-0.2290.107-0.0280.104
COBRA1COBRA1 on ITI COBRA1 on NCBI41982062050.1500.1370.3350.159-0.016
MEGF6MEGF6 on ITI MEGF6 on NCBI23912062200.1700.1100.1970.0670.083
GAB2GAB2 on ITI GAB2 on NCBI1652206230-0.098-0.065-0.1590.1360.211
MAP3K3MAP3K3 on ITI MAP3K3 on NCBI41982062050.1020.0850.0460.0280.094
ZNF394ZNF394 on ITI ZNF394 on NCBI16522062300.1420.135-0.0080.013-0.093
GSTZ1GSTZ1 on ITI GSTZ1 on NCBI16522062300.1260.107-0.129-0.016-0.080
GABPAGABPA on ITI GABPA on NCBI61202062000.0190.033-0.1830.066-0.161
NCK1NCK1 on ITI NCK1 on NCBI3265206208-0.0650.135-0.100-0.0590.151
VBP1VBP1 on ITI VBP1 on NCBI1652206230-0.1370.176-0.0750.1480.059
WIPF1WIPF1 on ITI WIPF1 on NCBI16522062300.1120.020-0.108-0.0430.114
FLNAFLNA on ITI FLNA on NCBI71002061980.0770.0810.1070.1480.126
CDK7CDK7 on ITI CDK7 on NCBI4198129130-0.0020.1050.1840.017-0.097
PEG3PEG3 on ITI PEG3 on NCBI1652206230-0.0010.0340.0990.0650.030
FRKFRK on ITI FRK on NCBI16522062300.0820.1100.003-0.1560.190
DSPDSP on ITI DSP on NCBI71002061980.0520.0540.235-0.1190.053
CDK1CDK1 on ITI CDK1 on NCBI1634206194-0.1380.265-0.1950.1060.031
ZNF232ZNF232 on ITI ZNF232 on NCBI514857630.0100.048-0.0400.1890.159
CRKCRK on ITI CRK on NCBI27172061930.232-0.1160.1060.0900.017
BRD2BRD2 on ITI BRD2 on NCBI3265129139-0.0060.0160.3480.1050.093
PSMC6PSMC6 on ITI PSMC6 on NCBI16522062300.1060.1630.061-0.0100.044
WASLWASL on ITI WASL on NCBI23912062200.1110.186-0.065-0.021-0.084
CLCA2CLCA2 on ITI CLCA2 on NCBI51482062020.188-0.1760.243-0.153-0.000
ZNF18ZNF18 on ITI ZNF18 on NCBI1652206230undef0.0850.072undefundef
CLUCLU on ITI CLU on NCBI10671171210.280-0.2080.119-0.153-0.234
TNFSF4TNFSF4 on ITI TNFSF4 on NCBI16522062300.0570.229-0.071-0.1910.160
E2F2E2F2 on ITI E2F2 on NCBI4198129130-0.0210.212-0.0470.162-0.092
ENO2ENO2 on ITI ENO2 on NCBI2391206220-0.0660.0850.1140.1480.208
TRAF2TRAF2 on ITI TRAF2 on NCBI6120206200-0.1070.185-0.172-0.013-0.092
ATP2A3ATP2A3 on ITI ATP2A3 on NCBI9771180.240-0.0400.082-0.229-0.025
RCAN1RCAN1 on ITI RCAN1 on NCBI16522062300.025-0.0020.1110.005-0.045
ITGB5ITGB5 on ITI ITGB5 on NCBI16522062300.0510.1630.2080.0810.148
IQGAP2IQGAP2 on ITI IQGAP2 on NCBI16341171190.264-0.170-0.051-0.1120.049
ADD3ADD3 on ITI ADD3 on NCBI1652206230-0.024-0.2740.035-0.1920.183
IRAK1IRAK1 on ITI IRAK1 on NCBI4198206205-0.1700.266-0.0230.092-0.102
MYCMYC on ITI MYC on NCBI2421148137-0.056-0.101-0.1690.188-0.134
EEF1A2EEF1A2 on ITI EEF1A2 on NCBI9771821790.0980.0320.220-0.1190.102
GHRGHR on ITI GHR on NCBI1442148146-0.006-0.1120.1740.0900.201
DCTN4DCTN4 on ITI DCTN4 on NCBI16522062300.0730.122-0.025-0.111-0.105
ANXA5ANXA5 on ITI ANXA5 on NCBI16522062300.0640.098-0.0090.1260.264
ERBB3ERBB3 on ITI ERBB3 on NCBI51482062020.175-0.171-0.007-0.141-0.098
PDPK1PDPK1 on ITI PDPK1 on NCBI16522062300.130-0.050-0.200-0.0240.134
PPP3CAPPP3CA on ITI PPP3CA on NCBI16522062300.0940.0150.1400.1100.042
NR3C1NR3C1 on ITI NR3C1 on NCBI16522062300.1740.026-0.019-0.0470.197
PIK3R1PIK3R1 on ITI PIK3R1 on NCBI911110.189-0.2370.3810.065-0.002
VLDLRVLDLR on ITI VLDLR on NCBI1652206230-0.067-0.0590.109-0.1280.024
FHL2FHL2 on ITI FHL2 on NCBI51482062020.0330.1430.239-0.0330.294
FOSFOS on ITI FOS on NCBI20241481380.060-0.1370.1290.1850.234
LIN7CLIN7C on ITI LIN7C on NCBI1652206230-0.0430.1660.0880.1180.094
EGFREGFR on ITI EGFR on NCBI7221171170.064-0.1950.240-0.2050.065
CFL2CFL2 on ITI CFL2 on NCBI1652206230undef0.2350.026undefundef
CDC27CDC27 on ITI CDC27 on NCBI4198123-0.0620.156-0.086-0.0290.348
ALBALB on ITI ALB on NCBI710057600.207-0.1220.2180.0800.038
CUL2CUL2 on ITI CUL2 on NCBI32652062080.1030.124-0.192-0.0900.166
NDE1NDE1 on ITI NDE1 on NCBI1652206230-0.0320.142-0.0580.1420.111
CDK2CDK2 on ITI CDK2 on NCBI1634129124-0.1040.196-0.0960.1090.362
NPHP1NPHP1 on ITI NPHP1 on NCBI2391206220-0.1130.1390.0950.026-0.110
EIF2C3EIF2C3 on ITI EIF2C3 on NCBI2391206220-0.053-0.1980.0700.040-0.125
SPASTSPAST on ITI SPAST on NCBI16522062300.1040.0330.029-0.2710.135

GO Enrichment output for subnetwork 605 in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.051E-074.718E-04
interphaseGO:0051325GO:0051325 on GO2.455E-072.823E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.385E-074.895E-04
activation of NF-kappaB-inducing kinase activityGO:0007250GO:0007250 on GO2.513E-061.445E-03
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.003E-054.615E-03
negative regulation of cyclin-dependent protein kinase activityGO:0045736GO:0045736 on GO2.042E-057.827E-03
insulin-like growth factor receptor signaling pathwayGO:0048009GO:0048009 on GO2.042E-056.709E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.36E-059.661E-03
regulation of B cell proliferationGO:0030888GO:0030888 on GO4.329E-050.01106239
regulation of chemokine biosynthetic processGO:0045073GO:0045073 on GO4.329E-059.956E-03
actin filament organizationGO:0007015GO:0007015 on GO6.837E-050.01429506


IPC file

NameAccession NumberLinkP-valCorrected P-val
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO7.333E-081.791E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.97E-072.406E-04
activation of NF-kappaB-inducing kinase activityGO:0007250GO:0007250 on GO1.977E-061.61E-03
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO4.826E-062.948E-03
insulin-like growth factor receptor signaling pathwayGO:0048009GO:0048009 on GO1.333E-056.513E-03
insulin receptor signaling pathwayGO:0008286GO:0008286 on GO1.396E-055.686E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.568E-055.473E-03
negative regulation of cyclin-dependent protein kinase activityGO:0045736GO:0045736 on GO1.897E-055.792E-03
regulation of chemokine biosynthetic processGO:0045073GO:0045073 on GO1.897E-055.148E-03
regulation of B cell proliferationGO:0030888GO:0030888 on GO3.449E-058.426E-03
regulation of chemokine productionGO:0032642GO:0032642 on GO4.466E-059.918E-03


Loi file

NameAccession NumberLinkP-valCorrected P-val
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.184E-072.848E-04
interphaseGO:0051325GO:0051325 on GO1.509E-071.815E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO3.436E-072.756E-04
activation of NF-kappaB-inducing kinase activityGO:0007250GO:0007250 on GO2.888E-061.737E-03
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO7.66E-063.686E-03
insulin receptor signaling pathwayGO:0008286GO:0008286 on GO1.738E-056.971E-03
insulin-like growth factor receptor signaling pathwayGO:0048009GO:0048009 on GO1.775E-056.102E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.476E-057.446E-03
negative regulation of cyclin-dependent protein kinase activityGO:0045736GO:0045736 on GO2.525E-056.75E-03
regulation of chemokine biosynthetic processGO:0045073GO:0045073 on GO2.525E-056.075E-03
regulation of B cell proliferationGO:0030888GO:0030888 on GO4.588E-050.01003486


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.051E-074.718E-04
interphaseGO:0051325GO:0051325 on GO2.455E-072.823E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.385E-074.895E-04
activation of NF-kappaB-inducing kinase activityGO:0007250GO:0007250 on GO2.513E-061.445E-03
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.003E-054.615E-03
negative regulation of cyclin-dependent protein kinase activityGO:0045736GO:0045736 on GO2.042E-057.827E-03
insulin-like growth factor receptor signaling pathwayGO:0048009GO:0048009 on GO2.042E-056.709E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.36E-059.661E-03
regulation of B cell proliferationGO:0030888GO:0030888 on GO4.329E-050.01106239
regulation of chemokine biosynthetic processGO:0045073GO:0045073 on GO4.329E-059.956E-03
actin filament organizationGO:0007015GO:0007015 on GO6.837E-050.01429506


Wang file

NameAccession NumberLinkP-valCorrected P-val
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.051E-074.718E-04
interphaseGO:0051325GO:0051325 on GO2.455E-072.823E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.385E-074.895E-04
activation of NF-kappaB-inducing kinase activityGO:0007250GO:0007250 on GO2.513E-061.445E-03
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.003E-054.615E-03
negative regulation of cyclin-dependent protein kinase activityGO:0045736GO:0045736 on GO2.042E-057.827E-03
insulin-like growth factor receptor signaling pathwayGO:0048009GO:0048009 on GO2.042E-056.709E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.36E-059.661E-03
regulation of B cell proliferationGO:0030888GO:0030888 on GO4.329E-050.01106239
regulation of chemokine biosynthetic processGO:0045073GO:0045073 on GO4.329E-059.956E-03
actin filament organizationGO:0007015GO:0007015 on GO6.837E-050.01429506


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