Study VanDeVijver-ER-neg

Study informations

122 subnetworks in total page | file

1481 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 528

score

DatasetScoreP-val 1P-val 2P-val 3Fisher Score
Desmedt0.28061.241e-028.610e-043.767e-014.025e-06
IPC0.44931.805e-015.868e-028.976e-019.506e-03
Loi0.42505.140e-040.000e+008.449e-020.000e+00
Schmidt0.61890.000e+000.000e+007.856e-020.000e+00
Wang0.23191.983e-021.197e-013.510e-018.328e-04

Expression data for subnetwork 528 in each dataset

Desmedt | IPC | Loi | Schmidt | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 528 in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPCLoiSchmidtWang
EP300EP300 on ITI EP300 on NCBI713120.016-0.1490.0870.1020.025
ARHGAP26ARHGAP26 on ITI ARHGAP26 on NCBI5148444440-0.145-0.0230.171-0.222-0.348
RUNX2RUNX2 on ITI RUNX2 on NCBI2391364375-0.0870.184-0.104-0.127undef
MGPMGP on ITI MGP on NCBI16528478650.026-0.0880.0070.150-0.030
GABBR1GABBR1 on ITI GABBR1 on NCBI23918478410.049-0.1070.1640.0810.131
OPHN1OPHN1 on ITI OPHN1 on NCBI51483393370.0030.0620.2780.194-0.182
TP53TP53 on ITI TP53 on NCBI2815190.015-0.1670.148-0.0270.147
GSTT1GSTT1 on ITI GSTT1 on NCBI6120364355-0.0340.1480.107-0.190-0.064
COL11A1COL11A1 on ITI COL11A1 on NCBI16528478650.1110.1910.149-0.0230.309
CDKN1ACDKN1A on ITI CDKN1A on NCBI564130.0750.0640.2540.0300.082
TGFB2TGFB2 on ITI TGFB2 on NCBI71005760-0.028-0.0630.2440.2260.015
PRKCAPRKCA on ITI PRKCA on NCBI5148339337-0.029-0.016-0.0880.1740.005
PSEN1PSEN1 on ITI PSEN1 on NCBI5148847821undef-0.0410.110undefundef
TFRCTFRC on ITI TFRC on NCBI1652847865-0.1400.038-0.0660.076-0.014
WISP2WISP2 on ITI WISP2 on NCBI16528478650.0750.232-0.0100.0880.204
BMP2BMP2 on ITI BMP2 on NCBI71003337-0.155-0.0110.0970.148-0.069
BCL2L14BCL2L14 on ITI BCL2L14 on NCBI1652847865-0.044-0.113-0.2240.118-0.238
SPP1SPP1 on ITI SPP1 on NCBI41983393410.0680.1300.1190.1840.153
CTNNB1CTNNB1 on ITI CTNNB1 on NCBI331433290.202-0.1130.1870.1590.239
CDC42CDC42 on ITI CDC42 on NCBI449160.0360.0470.242-0.027-0.042
MYCMYC on ITI MYC on NCBI2421148137-0.056-0.101-0.1690.188-0.134
GHRGHR on ITI GHR on NCBI1442148146-0.006-0.1120.1740.0900.201
COL5A1COL5A1 on ITI COL5A1 on NCBI16528478650.1250.0160.2260.0060.201
COL2A1COL2A1 on ITI COL2A1 on NCBI1652847865-0.127-0.077-0.0000.1740.173
BCL2BCL2 on ITI BCL2 on NCBI11593643500.067-0.077-0.0350.1280.043
KITKIT on ITI KIT on NCBI1347339335-0.034-0.130-0.0910.235-0.059
PIK3R1PIK3R1 on ITI PIK3R1 on NCBI911110.189-0.2370.3810.065-0.002
SKP2SKP2 on ITI SKP2 on NCBI1442148146-0.2280.092-0.0430.237-0.009
CR2CR2 on ITI CR2 on NCBI23918478410.010-0.042-0.0890.1010.015
RUNX3RUNX3 on ITI RUNX3 on NCBI88433350.1090.071-0.0970.083-0.074
RANBP9RANBP9 on ITI RANBP9 on NCBI16528478650.0450.0280.1860.0630.116
TCF7L2TCF7L2 on ITI TCF7L2 on NCBI1730271264-0.071-0.0210.1430.2800.101
CDC45CDC45 on ITI CDC45 on NCBI4198847830-0.1770.134-0.1710.185-0.085
INSRINSR on ITI INSR on NCBI477150.1350.0630.1730.135-0.072
GRB7GRB7 on ITI GRB7 on NCBI13475751-0.0280.0210.115-0.0720.129
ITPR1ITPR1 on ITI ITPR1 on NCBI3265182189-0.002-0.0960.0770.0150.008
GSK3BGSK3B on ITI GSK3B on NCBI47733280.117-0.1300.292-0.1290.057
GRIN2DGRIN2D on ITI GRIN2D on NCBI18263332undef0.0580.1550.000undef
SMAD1SMAD1 on ITI SMAD1 on NCBI242133300.2870.0490.159-0.0620.048
SMURF1SMURF1 on ITI SMURF1 on NCBI9773334-0.013-0.2220.236-0.049-0.006
IGF2IGF2 on ITI IGF2 on NCBI61205325140.261-0.0220.1720.1450.116

GO Enrichment output for subnetwork 528 in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
regulation of ossificationGO:0030278GO:0030278 on GO8.543E-101.965E-06
cartilage developmentGO:0051216GO:0051216 on GO1.357E-091.561E-06
regulation of bone remodelingGO:0046850GO:0046850 on GO2.403E-091.842E-06
regulation of tissue remodelingGO:0034103GO:0034103 on GO2.752E-091.582E-06
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.602E-087.371E-06
collagen fibril organizationGO:0030199GO:0030199 on GO1.748E-086.7E-06
Wnt receptor signaling pathway through beta-cateninGO:0060070GO:0060070 on GO2.044E-086.716E-06
chondrocyte differentiationGO:0002062GO:0002062 on GO9.543E-082.744E-05
cell fate commitmentGO:0045165GO:0045165 on GO1.198E-073.062E-05
peptidyl-amino acid modificationGO:0018193GO:0018193 on GO1.291E-072.97E-05
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO2.867E-075.995E-05


IPC file

NameAccession NumberLinkP-valCorrected P-val
Wnt receptor signaling pathway through beta-cateninGO:0060070GO:0060070 on GO1.166E-122.85E-09
regulation of ossificationGO:0030278GO:0030278 on GO8.063E-109.849E-07
cartilage developmentGO:0051216GO:0051216 on GO1.233E-091.004E-06
epithelial to mesenchymal transitionGO:0001837GO:0001837 on GO2.058E-091.257E-06
regulation of bone remodelingGO:0046850GO:0046850 on GO2.088E-091.02E-06
regulation of tissue remodelingGO:0034103GO:0034103 on GO2.367E-099.638E-07
mesenchymal cell developmentGO:0014031GO:0014031 on GO1.035E-083.611E-06
collagen fibril organizationGO:0030199GO:0030199 on GO1.369E-084.182E-06
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.851E-085.025E-06
osteoblast differentiationGO:0001649GO:0001649 on GO4.36E-081.065E-05
ossificationGO:0001503GO:0001503 on GO5.747E-081.276E-05


Loi file

NameAccession NumberLinkP-valCorrected P-val
Wnt receptor signaling pathway through beta-cateninGO:0060070GO:0060070 on GO7.69E-131.85E-09
regulation of ossificationGO:0030278GO:0030278 on GO1.227E-091.476E-06
cartilage developmentGO:0051216GO:0051216 on GO1.633E-091.31E-06
epithelial to mesenchymal transitionGO:0001837GO:0001837 on GO2.801E-091.685E-06
regulation of bone remodelingGO:0046850GO:0046850 on GO3.174E-091.527E-06
regulation of tissue remodelingGO:0034103GO:0034103 on GO3.597E-091.443E-06
mesenchymal cell developmentGO:0014031GO:0014031 on GO1.274E-084.379E-06
collagen fibril organizationGO:0030199GO:0030199 on GO1.862E-085.599E-06
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.659E-087.109E-06
osteoblast differentiationGO:0001649GO:0001649 on GO4.798E-081.154E-05
chondrocyte differentiationGO:0002062GO:0002062 on GO8.004E-081.751E-05


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
regulation of ossificationGO:0030278GO:0030278 on GO8.543E-101.965E-06
cartilage developmentGO:0051216GO:0051216 on GO1.357E-091.561E-06
regulation of bone remodelingGO:0046850GO:0046850 on GO2.403E-091.842E-06
regulation of tissue remodelingGO:0034103GO:0034103 on GO2.752E-091.582E-06
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.602E-087.371E-06
collagen fibril organizationGO:0030199GO:0030199 on GO1.748E-086.7E-06
Wnt receptor signaling pathway through beta-cateninGO:0060070GO:0060070 on GO2.044E-086.716E-06
chondrocyte differentiationGO:0002062GO:0002062 on GO9.543E-082.744E-05
cell fate commitmentGO:0045165GO:0045165 on GO1.198E-073.062E-05
peptidyl-amino acid modificationGO:0018193GO:0018193 on GO1.291E-072.97E-05
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO2.867E-075.995E-05


Wang file

NameAccession NumberLinkP-valCorrected P-val
regulation of ossificationGO:0030278GO:0030278 on GO8.543E-101.965E-06
cartilage developmentGO:0051216GO:0051216 on GO1.357E-091.561E-06
regulation of bone remodelingGO:0046850GO:0046850 on GO2.403E-091.842E-06
regulation of tissue remodelingGO:0034103GO:0034103 on GO2.752E-091.582E-06
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.602E-087.371E-06
collagen fibril organizationGO:0030199GO:0030199 on GO1.748E-086.7E-06
Wnt receptor signaling pathway through beta-cateninGO:0060070GO:0060070 on GO2.044E-086.716E-06
chondrocyte differentiationGO:0002062GO:0002062 on GO9.543E-082.744E-05
cell fate commitmentGO:0045165GO:0045165 on GO1.198E-073.062E-05
peptidyl-amino acid modificationGO:0018193GO:0018193 on GO1.291E-072.97E-05
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO2.867E-075.995E-05


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