Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6827

score

Expression data for subnetwork 6827 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6827 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
TRIP10		5	360	1034	1004	0.012	0.154	0.049	undef	0.144
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
RRAD		2	743	1034	1039	-0.081	0.171	-0.082	0.069	0.117
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
VPS13A		10	167	236	234	-0.203	0.105	-0.046	0.120	0.062
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
GRM5		15	111	179	191	0.094	-0.019	0.000	0.093	-0.093
JUND		2	743	991	999	-0.077	0.091	-0.075	0.007	-0.005
PCNA		15	111	1	32	0.243	-0.158	0.027	-0.099	0.003
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
CTGF		32	40	318	290	-0.169	0.181	0.126	0.101	0.209
CDC42		26	52	179	177	0.047	0.242	-0.027	0.040	-0.042
SRI		7	256	614	601	0.270	-0.040	0.181	0.185	0.057
PSEN2		14	117	614	591	0.239	-0.068	-0.157	0.295	0.045
ZNF365		4	440	141	165	0.161	0.190	-0.050	-0.053	-0.008
NDEL1		1	1195	1034	1069	-0.023	0.211	0.146	undef	0.221
DLX3		3	557	236	265	0.144	-0.056	undef	-0.015	undef
SEMA3F		2	743	83	123	0.097	0.035	0.094	undef	-0.068
ZNF10		1	1195	1034	1069	-0.125	0.125	-0.014	undef	0.014
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
ALCAM		8	222	1	46	-0.208	0.193	0.067	0.088	-0.010
STX16		2	743	1034	1039	-0.041	0.027	0.279	0.073	0.088
PDHB		13	124	525	503	0.056	0.017	0.197	-0.205	0.193
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
TCF7L1		2	743	1034	1039	-0.062	-0.031	0.211	undef	-0.108
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
ARHGEF6		10	167	525	507	-0.068	-0.120	0.166	undef	-0.115
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
PARD3		6	301	366	377	0.030	-0.006	-0.052	0.040	-0.090
ARHGEF7		25	59	83	92	-0.074	-0.061	0.208	0.028	0.015
DCTN2		8	222	366	373	0.014	0.150	0.061	0.113	0.303
SMAD7		5	360	1034	1004	-0.035	0.131	0.169	0.061	0.147
PSEN1		10	167	366	362	-0.041	0.110	undef	0.083	undef
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
SUMO1		5	360	1034	1004	0.245	-0.007	0.144	0.083	0.118
STX6		3	557	236	265	0.193	0.152	0.038	0.052	0.064
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
GRM1		2	743	1034	1039	-0.140	-0.030	0.000	0.093	-0.105
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
AMH		10	167	366	362	0.103	0.056	0.113	-0.187	0.301
PAK2		26	52	179	177	0.014	0.161	0.081	-0.044	0.062
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
CD9		13	124	525	503	0.036	-0.115	-0.109	0.281	-0.147
ALS2CR8		1	1195	1034	1069	-0.003	0.065	0.140	undef	-0.092
UBB		3	557	696	695	0.146	-0.027	0.012	undef	-0.019
DLX4		10	167	236	234	0.291	0.057	-0.004	undef	-0.059
CKAP4		6	301	780	764	0.093	0.152	-0.167	0.315	-0.017
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
TPM2		4	440	1034	1015	0.007	0.269	0.212	0.051	0.203
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
TM7SF2		2	743	590	616	-0.064	-0.016	0.022	0.106	-0.048
PTPN12		6	301	478	473	-0.159	0.153	0.031	0.083	0.042
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
SLC15A2		4	440	928	912	-0.076	0.109	-0.068	0.050	-0.123
TCF7L2		17	95	366	358	-0.021	0.143	0.280	undef	0.101
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
SOX13		4	440	1034	1015	-0.113	0.095	-0.002	0.271	-0.184
KPNA1		9	196	141	147	0.007	0.152	-0.083	0.073	0.086
RAD51		13	124	727	699	0.146	-0.098	0.135	-0.070	0.061
SNAP29		1	1195	1034	1069	0.105	0.161	0.064	-0.032	0.062
IL6		9	196	366	365	0.257	-0.106	0.226	0.024	0.035
TIE1		18	86	366	357	-0.108	0.005	0.141	-0.108	0.252
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6827 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
Wnt receptor signaling pathway through beta-catenin	GO:0060070		1.071E-11	2.616E-08
negative regulation of phosphorylation	GO:0042326		2.941E-09	3.593E-06
negative regulation of phosphorus metabolic process	GO:0010563		4.986E-09	4.06E-06
regulation of lipid kinase activity	GO:0043550		5.799E-08	3.542E-05
negative regulation of protein kinase activity	GO:0006469		1.013E-07	4.949E-05
induction of positive chemotaxis	GO:0050930		1.039E-07	4.232E-05
positive regulation of locomotion	GO:0040017		1.095E-07	3.821E-05
negative regulation of kinase activity	GO:0033673		1.12E-07	3.421E-05
regulation of chemotaxis	GO:0050920		1.393E-07	3.78E-05
negative regulation of transferase activity	GO:0051348		1.651E-07	4.034E-05
protein sumoylation	GO:0016925		1.725E-07	3.831E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
Wnt receptor signaling pathway through beta-catenin	GO:0060070		6.55E-12	1.576E-08
negative regulation of phosphorylation	GO:0042326		3.929E-09	4.726E-06
negative regulation of phosphorus metabolic process	GO:0010563		6.657E-09	5.339E-06
regulation of lipid kinase activity	GO:0043550		3.548E-08	2.134E-05
positive regulation of locomotion	GO:0040017		1.083E-07	5.211E-05
negative regulation of protein kinase activity	GO:0006469		1.143E-07	4.582E-05
induction of positive chemotaxis	GO:0050930		1.266E-07	4.351E-05
negative regulation of kinase activity	GO:0033673		1.268E-07	3.812E-05
regulation of chemotaxis	GO:0050920		1.395E-07	3.73E-05
negative regulation of transferase activity	GO:0051348		1.89E-07	4.546E-05
protein sumoylation	GO:0016925		2.1E-07	4.594E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		1.571E-08	3.614E-05
negative regulation of phosphorus metabolic process	GO:0010563		2.722E-08	3.131E-05
regulation of lipid kinase activity	GO:0043550		1.101E-07	8.441E-05
induction of positive chemotaxis	GO:0050930		2.189E-07	1.259E-04
Wnt receptor signaling pathway through beta-catenin	GO:0060070		2.189E-07	1.007E-04
negative regulation of protein kinase activity	GO:0006469		2.424E-07	9.294E-05
negative regulation of kinase activity	GO:0033673		2.74E-07	9.002E-05
positive regulation of locomotion	GO:0040017		3.343E-07	9.611E-05
negative regulation of transferase activity	GO:0051348		3.901E-07	9.969E-05
regulation of chemotaxis	GO:0050920		4.361E-07	1.003E-04
regulation of transcription factor activity	GO:0051090		4.885E-07	1.021E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
membrane fusion	GO:0006944		1.595E-06	2.94E-03
positive regulation of epithelial cell proliferation	GO:0050679		1.668E-06	1.537E-03
amyloid precursor protein catabolic process	GO:0042987		2.772E-06	1.703E-03
regulation of lipid kinase activity	GO:0043550		5.518E-06	2.542E-03
amyloid precursor protein metabolic process	GO:0042982		9.611E-06	3.542E-03
membrane protein ectodomain proteolysis	GO:0006509		9.611E-06	2.952E-03
platelet activation	GO:0030168		9.611E-06	2.53E-03
plasma membrane fusion	GO:0045026		1.53E-05	3.526E-03
positive regulation of leukocyte migration	GO:0002687		1.53E-05	3.134E-03
regulation of leukocyte migration	GO:0002685		2.285E-05	4.211E-03
protein amino acid autophosphorylation	GO:0046777		3.185E-05	5.337E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		1.571E-08	3.614E-05
negative regulation of phosphorus metabolic process	GO:0010563		2.722E-08	3.131E-05
regulation of lipid kinase activity	GO:0043550		1.101E-07	8.441E-05
induction of positive chemotaxis	GO:0050930		2.189E-07	1.259E-04
Wnt receptor signaling pathway through beta-catenin	GO:0060070		2.189E-07	1.007E-04
negative regulation of protein kinase activity	GO:0006469		2.424E-07	9.294E-05
negative regulation of kinase activity	GO:0033673		2.74E-07	9.002E-05
positive regulation of locomotion	GO:0040017		3.343E-07	9.611E-05
negative regulation of transferase activity	GO:0051348		3.901E-07	9.969E-05
regulation of chemotaxis	GO:0050920		4.361E-07	1.003E-04
regulation of transcription factor activity	GO:0051090		4.885E-07	1.021E-04