Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6744

score

Expression data for subnetwork 6744 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6744 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
PLSCR4		13	124	318	316	-0.069	0.140	0.231	0.212	0.212
PAX6		22	69	318	312	0.259	-0.003	0.112	undef	0.168
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
ACTG1		2	743	983	988	-0.102	0.061	0.012	0.161	0.235
WASF1		7	256	1	47	0.162	-0.070	0.348	-0.037	0.130
PBX3		2	743	983	988	0.065	0.008	0.034	0.103	0.021
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
PBX1		6	301	1	52	-0.010	0.145	-0.013	0.176	-0.053
CHUK		6	301	318	330	0.173	0.080	0.152	undef	0.215
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
PFN2		11	148	141	143	0.014	-0.001	0.286	-0.002	-0.056
COPG2		4	440	412	419	-0.058	-0.232	0.000	0.086	-0.081
GDI1		3	557	842	834	0.219	0.094	0.049	0.181	0.049
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
EN1		10	167	179	194	0.196	0.024	0.011	-0.016	0.102
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
PSMB8		3	557	928	925	0.254	-0.071	-0.088	undef	-0.139
PSMA6		5	360	842	828	0.280	-0.118	-0.018	undef	-0.091
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
PSMA7		2	743	928	929	0.188	-0.067	0.223	-0.022	-0.001
RBM6		2	743	570	593	-0.082	0.265	-0.004	-0.096	0.111
NDUFB8		5	360	696	680	0.286	-0.012	0.340	-0.171	0.205
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
ST18		16	104	236	227	-0.131	0.028	-0.088	0.186	0.151
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
IGF2BP1		15	111	366	359	0.135	-0.036	undef	0.190	undef
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
PSMB4		2	743	983	988	0.281	-0.082	-0.027	-0.147	-0.066
GABPA		23	66	696	665	0.033	-0.183	0.066	0.141	-0.161
MMP1		11	148	366	360	0.192	0.014	0.036	0.044	0.260
RABAC1		1	1195	983	1017	0.138	0.077	-0.040	0.156	0.146
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
SYT1		11	148	1	39	-0.079	0.051	0.038	0.189	-0.124
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
PBX2		5	360	1	56	-0.122	-0.073	0.264	-0.095	0.092
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
FBXO11		5	360	457	455	0.027	0.186	-0.069	0.238	0.149
TFF1		7	256	957	928	0.106	0.022	0.088	-0.033	-0.244
TPR		11	148	727	701	-0.130	0.120	-0.036	-0.085	0.156
MMP3		6	301	179	205	0.121	0.171	0.081	0.198	0.192
IL6		9	196	366	365	0.257	-0.106	0.226	0.024	0.035
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
CLTC		3	557	983	979	-0.155	0.072	-0.095	0.179	0.048
PDZK1IP1		1	1195	983	1017	0.026	0.080	-0.166	0.021	-0.075
PLCB4		4	440	928	912	0.074	0.179	-0.113	0.248	-0.020
TUBB2B		13	124	141	141	-0.036	0.304	0.045	0.187	0.139
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
LPL		13	124	236	230	-0.102	-0.062	0.292	0.087	-0.105
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
COPS6		16	104	1	31	0.147	-0.068	0.128	0.216	0.065
FOSL1		11	148	366	360	-0.040	0.164	0.010	0.128	0.005
VRK1		1	1195	983	1017	0.169	-0.212	0.178	undef	-0.120
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
GOLGB1		3	557	983	979	0.104	0.352	0.044	0.079	0.175

GO Enrichment output for subnetwork 6744 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		2.403E-16	5.87E-13
myofibril assembly	GO:0030239		6.707E-15	8.192E-12
muscle cell development	GO:0055001		1.305E-14	1.063E-11
response to calcium ion	GO:0051592		1.499E-14	9.154E-12
actomyosin structure organization	GO:0031032		5.68E-14	2.775E-11
cellular component assembly involved in morphogenesis	GO:0010927		7.415E-14	3.019E-11
response to metal ion	GO:0010038		1.232E-13	4.301E-11
striated muscle cell differentiation	GO:0051146		2.518E-13	7.688E-11
response to inorganic substance	GO:0010035		2.699E-13	7.326E-11
muscle cell differentiation	GO:0042692		1.01E-10	2.467E-08
negative regulation of phosphorylation	GO:0042326		8.502E-10	1.888E-07

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		5.096E-16	1.226E-12
myofibril assembly	GO:0030239		1.419E-14	1.707E-11
response to calcium ion	GO:0051592		2.172E-14	1.742E-11
muscle cell development	GO:0055001		2.759E-14	1.66E-11
cellular component assembly involved in morphogenesis	GO:0010927		1.199E-13	5.77E-11
actomyosin structure organization	GO:0031032		1.199E-13	4.808E-11
response to metal ion	GO:0010038		1.729E-13	5.943E-11
response to inorganic substance	GO:0010035		3.939E-13	1.185E-10
striated muscle cell differentiation	GO:0051146		5.304E-13	1.418E-10
muscle cell differentiation	GO:0042692		1.876E-10	4.514E-08
negative regulation of phosphorylation	GO:0042326		1.406E-09	3.076E-07

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		1.589E-15	3.654E-12
myofibril assembly	GO:0030239		7.712E-14	8.869E-11
response to calcium ion	GO:0051592		7.992E-14	6.127E-11
muscle cell development	GO:0055001		1.63E-13	9.372E-11
cellular component assembly involved in morphogenesis	GO:0010927		3.245E-13	1.493E-10
actomyosin structure organization	GO:0031032		6.139E-13	2.353E-10
response to metal ion	GO:0010038		1.055E-12	3.465E-10
response to inorganic substance	GO:0010035		2.322E-12	6.676E-10
striated muscle cell differentiation	GO:0051146		2.524E-12	6.451E-10
muscle cell differentiation	GO:0042692		9.61E-10	2.21E-07
negative regulation of phosphorylation	GO:0042326		6.897E-09	1.442E-06

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of epithelial cell proliferation	GO:0050679		1.668E-06	3.073E-03
positive regulation of cell migration	GO:0030335		3.452E-06	3.181E-03
regulation of smooth muscle cell proliferation	GO:0048660		3.907E-06	2.4E-03
pigmentation	GO:0043473		3.907E-06	1.8E-03
positive regulation of cell motion	GO:0051272		5.194E-06	1.915E-03
peptidyl-serine phosphorylation	GO:0018105		5.518E-06	1.695E-03
regulation of cell migration	GO:0030334		6.593E-06	1.736E-03
G1/S transition of mitotic cell cycle	GO:0000082		9.635E-06	2.22E-03
regulation of locomotion	GO:0040012		1.229E-05	2.518E-03
regulation of cell motion	GO:0051270		1.229E-05	2.266E-03
negative regulation of bone remodeling	GO:0046851		1.53E-05	2.564E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		1.589E-15	3.654E-12
myofibril assembly	GO:0030239		7.712E-14	8.869E-11
response to calcium ion	GO:0051592		7.992E-14	6.127E-11
muscle cell development	GO:0055001		1.63E-13	9.372E-11
cellular component assembly involved in morphogenesis	GO:0010927		3.245E-13	1.493E-10
actomyosin structure organization	GO:0031032		6.139E-13	2.353E-10
response to metal ion	GO:0010038		1.055E-12	3.465E-10
response to inorganic substance	GO:0010035		2.322E-12	6.676E-10
striated muscle cell differentiation	GO:0051146		2.524E-12	6.451E-10
muscle cell differentiation	GO:0042692		9.61E-10	2.21E-07
negative regulation of phosphorylation	GO:0042326		6.897E-09	1.442E-06