Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6709

score

Expression data for subnetwork 6709 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6709 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
LIN28B		1	1195	882	918	0.136	0.071	undef	undef	undef
ADAM10		1	1195	882	918	-0.036	0.069	0.151	-0.107	-0.086
SUMO2		22	69	366	345	0.117	0.062	0.294	0.141	-0.096
TPX2		5	360	412	416	0.114	-0.121	-0.018	undef	-0.056
PBX1		6	301	1	52	-0.010	0.145	-0.013	0.176	-0.053
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
NLE1		3	557	882	871	0.138	-0.086	-0.018	0.001	0.044
EEF1G		8	222	882	869	0.116	-0.224	0.131	0.086	0.082
MYH10		5	360	236	242	-0.029	0.139	0.132	undef	0.223
WEE1		4	440	658	649	-0.051	0.163	0.034	undef	0.215
ZC3H15		1	1195	882	918	-0.081	0.097	-0.015	0.030	-0.030
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
CTGF		32	40	318	290	-0.169	0.181	0.126	0.101	0.209
PIN1		24	62	179	181	0.194	0.040	-0.040	0.065	-0.048
ANKRD12		1	1195	882	918	-0.047	-0.193	0.074	-0.122	0.094
LAMA4		13	124	696	670	-0.016	0.138	0.209	0.172	0.343
GAPDH		11	148	141	143	0.159	-0.040	-0.053	0.088	0.029
PARP1		29	45	83	84	-0.036	-0.162	-0.089	0.238	0.012
FGF4		2	743	882	892	undef	undef	undef	0.116	undef
GABPA		23	66	696	665	0.033	-0.183	0.066	0.141	-0.161
AKT2		28	47	412	394	0.110	-0.118	-0.003	0.088	-0.092
DLG4		5	360	806	784	0.059	-0.113	0.151	-0.131	0.123
ATF3		17	95	179	189	0.225	-0.021	0.000	undef	-0.039
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
CDC25C		3	557	658	654	0.189	0.029	0.201	-0.055	-0.062
HDAC5		2	743	882	892	0.022	0.029	-0.165	-0.125	0.009
FGFR1		26	52	638	615	-0.036	0.200	0.087	undef	-0.015
USP36		3	557	882	871	-0.144	-0.044	0.203	undef	0.014
ZNF396		2	743	882	892	0.151	undef	undef	undef	undef
ZNF232		3	557	882	871	0.048	-0.040	0.189	-0.007	0.159
LEF1		3	557	696	695	-0.068	0.016	-0.018	0.001	0.139
DCLK1		7	256	141	151	-0.145	-0.006	-0.048	0.188	-0.035
UBE2V2		2	743	1	66	0.180	-0.027	0.196	undef	0.060
MAP2		3	557	552	558	0.044	0.045	0.014	undef	-0.057
CLCA2		9	196	412	411	-0.176	0.243	-0.153	0.191	-0.000
HDAC1		4	440	318	337	0.122	-0.020	0.050	-0.035	-0.172
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
ATG5		2	743	882	892	0.195	-0.113	-0.013	-0.050	0.210
CA9		2	743	882	892	0.146	0.137	0.068	0.099	0.116
SCD5		1	1195	882	918	0.136	0.036	0.171	-0.111	-0.232
GNL2		2	743	882	892	0.092	0.129	-0.037	-0.220	-0.019
GABRR2		3	557	882	871	0.135	-0.008	0.204	0.225	0.115
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
AKAP6		3	557	882	871	undef	0.116	-0.125	0.026	0.153
IRF4		2	743	882	892	0.153	-0.250	-0.172	-0.076	-0.103
FGFR3		9	196	179	195	0.160	0.071	0.018	-0.050	-0.111
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
SUV39H2		8	222	318	325	0.150	-0.097	-0.057	undef	0.028
PTEN		27	50	141	135	0.045	0.055	0.017	0.183	-0.041
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
NEK2		8	222	141	149	0.292	-0.106	0.020	0.083	0.165
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
CHGB		7	256	682	664	-0.126	-0.041	0.018	0.102	-0.131
FGFR4		21	73	179	183	-0.011	0.188	-0.089	-0.018	-0.049
CDC25A		8	222	570	555	0.113	-0.170	0.151	-0.301	-0.003
ZC4H2		17	95	570	546	0.065	0.061	0.304	-0.072	0.059
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
GTPBP4		4	440	882	870	0.129	-0.179	0.076	-0.043	-0.026
FHL2		21	73	658	630	0.143	0.239	-0.033	0.107	0.294
RUNX3		1	1195	882	918	0.071	-0.097	0.083	-0.106	-0.074
PRDM1		2	743	882	892	0.114	-0.101	undef	-0.251	undef
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
FANCA		9	196	1	44	0.120	-0.188	0.106	-0.127	-0.053
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
ECH1		2	743	882	892	0.065	-0.008	-0.070	0.193	-0.017
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
PTPRC		9	196	83	99	-0.031	-0.204	-0.050	-0.179	-0.068
NEK1		15	111	141	139	0.032	0.184	0.049	undef	0.135
CXCR4		2	743	882	892	-0.103	-0.189	-0.094	-0.160	-0.010
IKBKE		10	167	552	539	0.227	-0.041	-0.095	-0.197	0.079
HIF1A		13	124	236	230	-0.098	0.224	-0.118	0.135	0.356
FGFR2		7	256	179	201	-0.024	-0.001	0.129	undef	0.009
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
GRIN2D		13	124	552	522	0.058	0.155	0.000	undef	undef
EFNA1		1	1195	882	918	0.198	0.099	0.139	0.002	0.082
FHL1		14	117	614	591	-0.041	0.104	0.301	undef	0.266
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
FHL5		3	557	658	654	0.022	0.031	0.145	-0.095	0.153

GO Enrichment output for subnetwork 6709 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.05E-11	2.565E-08
fibroblast growth factor receptor signaling pathway	GO:0008543		2.521E-11	3.08E-08
regulation of cell adhesion	GO:0030155		1.405E-09	1.144E-06
negative regulation of cell adhesion	GO:0007162		8.146E-09	4.975E-06
negative regulation of cell-matrix adhesion	GO:0001953		8.475E-09	4.141E-06
regulation of protein stability	GO:0031647		9.924E-09	4.041E-06
regulation of cell-matrix adhesion	GO:0001952		1.227E-08	4.283E-06
phospholipid dephosphorylation	GO:0046839		1.328E-08	4.054E-06
negative regulation of phosphorylation	GO:0042326		1.627E-08	4.415E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.749E-08	6.715E-06
regulation of peptidyl-tyrosine phosphorylation	GO:0050730		3.828E-08	8.501E-06

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.826E-11	4.394E-08
fibroblast growth factor receptor signaling pathway	GO:0008543		6.094E-10	7.331E-07
regulation of cell adhesion	GO:0030155		1.737E-09	1.393E-06
negative regulation of cell adhesion	GO:0007162		7.987E-09	4.804E-06
negative regulation of cell-matrix adhesion	GO:0001953		1.131E-08	5.443E-06
regulation of protein stability	GO:0031647		1.207E-08	4.84E-06
phospholipid dephosphorylation	GO:0046839		1.676E-08	5.761E-06
regulation of cell-matrix adhesion	GO:0001952		1.727E-08	5.194E-06
negative regulation of phosphorylation	GO:0042326		2.288E-08	6.116E-06
negative regulation of phosphorus metabolic process	GO:0010563		3.864E-08	9.296E-06
regulation of peptidyl-tyrosine phosphorylation	GO:0050730		4.688E-08	1.025E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.831E-09	4.211E-06
fibroblast growth factor receptor signaling pathway	GO:0008543		2.786E-09	3.204E-06
negative regulation of phosphorylation	GO:0042326		8.372E-08	6.419E-05
cell growth	GO:0016049		1.09E-07	6.269E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.444E-07	6.645E-05
regulation of cell adhesion	GO:0030155		1.501E-07	5.755E-05
regulation of peptidyl-tyrosine phosphorylation	GO:0050730		2.174E-07	7.144E-05
induction of positive chemotaxis	GO:0050930		6.734E-07	1.936E-04
regulation of protein stability	GO:0031647		6.971E-07	1.782E-04
negative regulation of cell adhesion	GO:0007162		8.45E-07	1.943E-04
positive regulation of locomotion	GO:0040017		1.34E-06	2.802E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cell migration	GO:0030334		2.124E-11	3.915E-08
regulation of locomotion	GO:0040012		7.096E-11	6.539E-08
regulation of cell motion	GO:0051270		7.096E-11	4.359E-08
regulation of cell adhesion	GO:0030155		4.934E-07	2.274E-04
placenta development	GO:0001890		5.324E-07	1.962E-04
positive regulation of cell migration	GO:0030335		6.603E-07	2.028E-04
positive regulation of cell motion	GO:0051272		1.083E-06	2.851E-04
blood vessel development	GO:0001568		1.659E-06	3.823E-04
vasculature development	GO:0001944		1.949E-06	3.991E-04
fibroblast growth factor receptor signaling pathway	GO:0008543		2.804E-06	5.169E-04
negative regulation of cell migration	GO:0030336		2.869E-06	4.807E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.831E-09	4.211E-06
fibroblast growth factor receptor signaling pathway	GO:0008543		2.786E-09	3.204E-06
negative regulation of phosphorylation	GO:0042326		8.372E-08	6.419E-05
cell growth	GO:0016049		1.09E-07	6.269E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.444E-07	6.645E-05
regulation of cell adhesion	GO:0030155		1.501E-07	5.755E-05
regulation of peptidyl-tyrosine phosphorylation	GO:0050730		2.174E-07	7.144E-05
induction of positive chemotaxis	GO:0050930		6.734E-07	1.936E-04
regulation of protein stability	GO:0031647		6.971E-07	1.782E-04
negative regulation of cell adhesion	GO:0007162		8.45E-07	1.943E-04
positive regulation of locomotion	GO:0040017		1.34E-06	2.802E-04