Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6619

score

Expression data for subnetwork 6619 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6619 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CCNE2		11	148	412	407	0.136	-0.178	0.241	undef	-0.055
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
DUSP8		4	440	1	59	0.118	0.257	0.068	0.208	-0.029
SF3B1		18	86	296	280	-0.154	0.126	-0.073	-0.131	-0.204
RET		7	256	366	376	0.098	0.063	-0.179	undef	-0.159
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
TPX2		5	360	412	416	0.114	-0.121	-0.018	undef	-0.056
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
PTP4A3		9	196	412	411	0.137	-0.196	0.085	undef	-0.004
IRX4		2	743	412	439	-0.012	0.137	-0.018	-0.139	0.125
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
GRM5		15	111	179	191	0.094	-0.019	0.000	0.093	-0.093
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
PCNA		15	111	1	32	0.243	-0.158	0.027	-0.099	0.003
SNRPD1		2	743	412	439	0.140	-0.211	0.198	-0.045	-0.008
PIN1		24	62	179	181	0.194	0.040	-0.040	0.065	-0.048
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
ACOX2		3	557	412	430	0.013	0.100	-0.021	0.134	0.047
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
STRAP		7	256	412	414	0.035	-0.128	0.074	0.154	-0.049
AFG3L2		1	1195	412	464	0.013	-0.211	0.098	-0.131	-0.010
CCL15		2	743	412	439	-0.190	0.004	0.141	-0.215	0.007
PDK1		10	167	1	40	0.183	-0.138	-0.041	-0.265	-0.126
DPM1		1	1195	412	464	0.177	-0.072	0.133	-0.025	0.009
PPARG		7	256	179	201	-0.119	0.011	0.105	0.059	0.039
AKT2		28	47	412	394	0.110	-0.118	-0.003	0.088	-0.092
SUMO3		3	557	412	430	0.126	0.081	0.087	0.138	-0.073
MMP1		11	148	366	360	0.192	0.014	0.036	0.044	0.260
GLO1		5	360	83	110	0.266	-0.089	0.135	0.100	0.076
LUC7L		1	1195	412	464	-0.029	-0.025	0.102	-0.018	-0.019
RCN2		3	557	412	430	0.059	0.051	0.176	0.008	-0.098
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
AHSG		5	360	412	416	-0.113	-0.054	0.000	0.132	undef
AGPAT2		3	557	412	430	0.167	-0.015	0.123	0.042	-0.076
LUC7L3		16	104	296	281	0.043	0.237	0.175	0.135	0.074
CLCA2		9	196	412	411	-0.176	0.243	-0.153	0.191	-0.000
CCNA1		33	37	412	393	0.174	0.092	0.078	0.055	-0.098
TNFRSF1A		8	222	412	413	0.050	0.094	-0.014	0.214	-0.045
ITGB1		1	1195	412	464	0.016	0.093	0.154	undef	0.074
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
PSPH		20	81	366	356	0.240	-0.019	-0.102	0.358	0.025
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
GYG2		2	743	412	439	0.092	-0.015	0.020	0.189	-0.004
CX3CR1		2	743	412	439	-0.213	0.060	0.113	-0.040	-0.050
GSTT1		15	111	1	32	0.148	0.107	-0.190	0.022	-0.064
IGF2BP2		2	743	412	439	0.210	-0.002	0.098	-0.098	-0.122
KIAA1377		18	86	141	136	-0.095	0.116	undef	0.198	undef
IKBKAP		10	167	412	408	0.089	0.184	0.142	0.105	-0.017
ITGB5		4	440	412	419	0.163	0.208	0.081	0.278	0.148
COPG2		4	440	412	419	-0.058	-0.232	0.000	0.086	-0.081
ADA		4	440	83	112	0.208	-0.164	-0.042	-0.102	0.219
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
CCR1		2	743	412	439	0.162	-0.205	-0.049	-0.123	-0.109
PTEN		27	50	141	135	0.045	0.055	0.017	0.183	-0.041
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
CCL4		1	1195	412	464	0.211	-0.334	-0.065	-0.166	0.003
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
BNIP3		11	148	236	232	0.193	0.071	0.102	0.119	0.285
ERRFI1		10	167	412	408	0.076	0.215	undef	-0.043	undef
C1orf103		4	440	412	419	0.057	0.029	-0.173	0.127	-0.159
DLX4		10	167	236	234	0.291	0.057	-0.004	undef	-0.059
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
DUSP1		4	440	1	59	-0.019	0.127	0.170	-0.031	0.134
MN1		3	557	366	389	-0.166	-0.047	0.150	0.010	0.011
CCL7		2	743	412	439	0.204	-0.142	0.011	undef	-0.140
PNP		2	743	412	439	0.036	-0.012	0.108	-0.040	0.132
PLSCR1		10	167	412	408	0.202	-0.159	0.091	undef	-0.105
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
SKP2		29	45	1	23	0.092	-0.043	0.237	undef	-0.009
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
MEST		1	1195	412	464	0.021	0.031	0.137	0.261	-0.063
TCERG1		4	440	412	419	0.098	0.093	0.172	0.228	0.105
MGMT		5	360	366	379	0.184	-0.022	0.201	undef	0.196
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
NR2F1		25	59	83	92	-0.252	0.113	0.133	-0.116	0.207
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
BAIAP2		3	557	412	430	-0.077	-0.025	0.099	0.092	-0.051
PBX2		5	360	1	56	-0.122	-0.073	0.264	-0.095	0.092
GRB2		13	124	318	316	-0.040	-0.159	-0.036	-0.028	-0.024
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
ADAMTS5		2	743	412	439	-0.066	0.021	0.211	0.180	0.030
ALB		3	557	412	430	-0.122	0.218	0.080	0.018	0.038
ITGA7		1	1195	412	464	-0.081	0.038	0.153	0.063	0.121
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
ACAN		5	360	412	416	0.156	0.132	-0.024	-0.171	-0.083
PGM2L1		3	557	412	430	-0.019	0.220	undef	undef	undef
ATN1		7	256	412	414	-0.005	-0.093	0.005	-0.185	-0.136
ITGAV		1	1195	412	464	-0.051	0.203	0.155	-0.025	0.105
DHRS1		1	1195	412	464	0.129	0.080	0.137	undef	-0.053
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
SNRNP70		5	360	296	310	-0.129	0.130	-0.059	-0.099	0.036
ADK		2	743	83	123	0.182	-0.115	0.099	undef	0.094
CCR5		2	743	412	439	0.153	-0.276	-0.159	-0.156	-0.067

GO Enrichment output for subnetwork 6619 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		1.009E-09	2.464E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.98E-09	7.305E-06
cellular response to insulin stimulus	GO:0032869		7.549E-09	6.147E-06
phospholipid dephosphorylation	GO:0046839		1.132E-08	6.913E-06
regulation of mitochondrial membrane permeability	GO:0046902		1.132E-08	5.53E-06
response to peptide hormone stimulus	GO:0043434		1.536E-08	6.255E-06
insulin receptor signaling pathway	GO:0008286		2.776E-08	9.688E-06
negative regulation of protein kinase B signaling cascade	GO:0051898		3.377E-08	1.031E-05
response to insulin stimulus	GO:0032868		3.567E-08	9.682E-06
cell-matrix adhesion	GO:0007160		6.091E-08	1.488E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		7.836E-08	1.74E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		1.877E-09	4.517E-06
cellular response to insulin stimulus	GO:0032869		1.07E-08	1.287E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.107E-08	8.879E-06
phospholipid dephosphorylation	GO:0046839		1.562E-08	9.398E-06
regulation of mitochondrial membrane permeability	GO:0046902		1.562E-08	7.518E-06
response to peptide hormone stimulus	GO:0043434		1.923E-08	7.71E-06
insulin receptor signaling pathway	GO:0008286		3.483E-08	1.197E-05
negative regulation of protein kinase B signaling cascade	GO:0051898		4.659E-08	1.401E-05
response to insulin stimulus	GO:0032868		5.252E-08	1.404E-05
cell-matrix adhesion	GO:0007160		1.006E-07	2.421E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		1.081E-07	2.364E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		7.357E-09	1.692E-05
cellular response to insulin stimulus	GO:0032869		3.133E-08	3.603E-05
regulation of mitochondrial membrane permeability	GO:0046902		4.284E-08	3.284E-05
response to peptide hormone stimulus	GO:0043434		7.468E-08	4.294E-05
insulin receptor signaling pathway	GO:0008286		9.01E-08	4.145E-05
cell-matrix adhesion	GO:0007160		1.288E-07	4.936E-05
response to insulin stimulus	GO:0032868		1.743E-07	5.729E-05
cell-substrate adhesion	GO:0031589		2.41E-07	6.929E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		2.953E-07	7.547E-05
integrin-mediated signaling pathway	GO:0007229		4.425E-07	1.018E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.868E-07	1.227E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
response to peptide hormone stimulus	GO:0043434		7.707E-08	1.42E-04
cellular response to insulin stimulus	GO:0032869		8.284E-08	7.633E-05
cell-matrix adhesion	GO:0007160		1.743E-07	1.071E-04
peptidyl-amino acid modification	GO:0018193		2.636E-07	1.215E-04
response to insulin stimulus	GO:0032868		3.36E-07	1.238E-04
cell-substrate adhesion	GO:0031589		3.594E-07	1.104E-04
insulin receptor signaling pathway	GO:0008286		4.522E-07	1.191E-04
integrin-mediated signaling pathway	GO:0007229		2.598E-06	5.984E-04
cell-substrate junction assembly	GO:0007044		3.049E-06	6.244E-04
mitochondrial membrane organization	GO:0007006		1.012E-05	1.864E-03
cellular response to hormone stimulus	GO:0032870		1.142E-05	1.913E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		7.357E-09	1.692E-05
cellular response to insulin stimulus	GO:0032869		3.133E-08	3.603E-05
regulation of mitochondrial membrane permeability	GO:0046902		4.284E-08	3.284E-05
response to peptide hormone stimulus	GO:0043434		7.468E-08	4.294E-05
insulin receptor signaling pathway	GO:0008286		9.01E-08	4.145E-05
cell-matrix adhesion	GO:0007160		1.288E-07	4.936E-05
response to insulin stimulus	GO:0032868		1.743E-07	5.729E-05
cell-substrate adhesion	GO:0031589		2.41E-07	6.929E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		2.953E-07	7.547E-05
integrin-mediated signaling pathway	GO:0007229		4.425E-07	1.018E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.868E-07	1.227E-04