Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6607

score

Expression data for subnetwork 6607 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6607 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
ARHGAP26		21	73	457	438	-0.023	0.171	-0.222	0.015	-0.348
CCNC		5	360	570	562	0.085	-0.053	undef	0.028	undef
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
PAX6		22	69	318	312	0.259	-0.003	0.112	undef	0.168
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
RGN		6	301	570	557	-0.051	-0.050	0.184	0.139	-0.120
DST		22	69	1	25	-0.094	0.343	0.065	-0.062	0.194
HEY2		8	222	570	555	-0.045	-0.021	0.398	-0.024	-0.058
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
PCNA		15	111	1	32	0.243	-0.158	0.027	-0.099	0.003
PIN1		24	62	179	181	0.194	0.040	-0.040	0.065	-0.048
RBM6		2	743	570	593	-0.082	0.265	-0.004	-0.096	0.111
CHD4		2	743	318	346	-0.012	0.079	0.092	0.062	-0.070
DCTN1		1	1195	570	625	-0.050	0.223	-0.055	-0.048	-0.120
CCNH		2	743	570	593	0.010	-0.066	0.071	-0.042	0.049
CAP2		2	743	570	593	-0.214	-0.017	0.206	0.196	0.169
CIRBP		5	360	366	379	-0.069	0.208	0.110	0.049	-0.045
CDC6		3	557	570	572	0.198	-0.053	0.038	-0.202	0.095
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
COPG		5	360	570	562	0.004	0.080	-0.158	undef	0.280
PSPH		20	81	366	356	0.240	-0.019	-0.102	0.358	0.025
HDAC2		13	124	318	316	0.079	-0.094	0.148	0.089	0.037
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
MCM10		5	360	179	208	0.178	-0.245	0.015	undef	-0.063
PLSCR4		13	124	318	316	-0.069	0.140	0.231	0.212	0.212
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
ATF7		28	47	179	175	0.085	0.115	-0.088	0.172	-0.092
IKBKAP		10	167	412	408	0.089	0.184	0.142	0.105	-0.017
ITGB5		4	440	412	419	0.163	0.208	0.081	0.278	0.148
EN1		10	167	179	194	0.196	0.024	0.011	-0.016	0.102
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
PTPRZ1		9	196	570	554	-0.114	0.183	0.233	-0.316	-0.095
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
INSM1		23	66	570	545	0.135	-0.184	-0.188	0.237	-0.032
IGF2BP1		15	111	366	359	0.135	-0.036	undef	0.190	undef
S100A9		1	1195	570	625	0.117	0.043	-0.110	-0.020	-0.045
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
CDC25A		8	222	570	555	0.113	-0.170	0.151	-0.301	-0.003
HES1		4	440	570	565	0.115	0.157	0.010	0.214	-0.106
ERG		9	196	179	195	-0.134	-0.026	0.235	-0.027	0.182
PLSCR1		10	167	412	408	0.202	-0.159	0.091	undef	-0.105
MYO10		3	557	570	572	-0.159	0.121	-0.191	0.074	0.066
ZC4H2		17	95	570	546	0.065	0.061	0.304	-0.072	0.059
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
PTPRC		9	196	83	99	-0.031	-0.204	-0.050	-0.179	-0.068
MNAT1		2	743	570	593	0.194	0.055	0.224	0.033	0.236
CLIP1		1	1195	570	625	-0.043	0.200	-0.079	-0.016	0.092
CD8A		1	1195	570	625	0.206	-0.295	-0.148	-0.056	-0.108
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
PDCD6		10	167	1	40	0.091	-0.060	undef	undef	undef
PKN3		18	86	179	187	-0.181	0.009	undef	0.239	undef
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
TUBB2B		13	124	141	141	-0.036	0.304	0.045	0.187	0.139
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
IGF2		14	117	570	553	-0.022	0.172	0.145	0.087	0.116

GO Enrichment output for subnetwork 6607 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.751E-08	4.277E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.311E-07	1.602E-04
insulin receptor signaling pathway	GO:0008286		2.454E-07	1.999E-04
regulation of B cell proliferation	GO:0030888		3.188E-07	1.947E-04
regulation of DNA metabolic process	GO:0051052		7.162E-07	3.499E-04
interphase of mitotic cell cycle	GO:0051329		7.679E-07	3.127E-04
response to peptide hormone stimulus	GO:0043434		9.723E-07	3.393E-04
phospholipid scrambling	GO:0017121		1.311E-06	4.002E-04
cellular response to insulin stimulus	GO:0032869		1.458E-06	3.957E-04
cell-substrate junction assembly	GO:0007044		1.924E-06	4.7E-04
T cell differentiation	GO:0030217		2.43E-06	5.397E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.121E-08	5.102E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.549E-07	1.864E-04
insulin receptor signaling pathway	GO:0008286		2.316E-07	1.857E-04
regulation of B cell proliferation	GO:0030888		3.583E-07	2.155E-04
interphase of mitotic cell cycle	GO:0051329		7.494E-07	3.606E-04
response to peptide hormone stimulus	GO:0043434		8.604E-07	3.45E-04
regulation of DNA metabolic process	GO:0051052		8.636E-07	2.968E-04
interphase	GO:0051325		9.259E-07	2.785E-04
L-serine biosynthetic process	GO:0006564		1.433E-06	3.83E-04
phospholipid scrambling	GO:0017121		1.433E-06	3.447E-04
cellular response to insulin stimulus	GO:0032869		1.464E-06	3.203E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.291E-08	9.87E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.739E-07	4.3E-04
regulation of B cell proliferation	GO:0030888		3.748E-07	2.873E-04
insulin receptor signaling pathway	GO:0008286		4.532E-07	2.606E-04
regulation of DNA metabolic process	GO:0051052		1.52E-06	6.99E-04
interphase of mitotic cell cycle	GO:0051329		1.645E-06	6.306E-04
interphase	GO:0051325		1.923E-06	6.317E-04
response to peptide hormone stimulus	GO:0043434		2.064E-06	5.933E-04
cellular response to insulin stimulus	GO:0032869		2.814E-06	7.192E-04
cell-substrate junction assembly	GO:0007044		4.097E-06	9.424E-04
apoptotic mitochondrial changes	GO:0008637		5.241E-06	1.096E-03

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
cell-substrate junction assembly	GO:0007044		3.568E-07	6.575E-04
insulin receptor signaling pathway	GO:0008286		2.263E-06	2.085E-03
response to peptide hormone stimulus	GO:0043434		2.574E-06	1.581E-03
integrin-mediated signaling pathway	GO:0007229		3.452E-06	1.591E-03
cell junction assembly	GO:0034329		3.907E-06	1.44E-03
cell-matrix adhesion	GO:0007160		4.551E-06	1.398E-03
focal adhesion formation	GO:0048041		5.518E-06	1.453E-03
peptidyl-serine phosphorylation	GO:0018105		5.518E-06	1.271E-03
cell-substrate adhesion	GO:0031589		7.561E-06	1.548E-03
cellular response to insulin stimulus	GO:0032869		9.635E-06	1.776E-03
cell junction organization	GO:0034330		1.172E-05	1.963E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.291E-08	9.87E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.739E-07	4.3E-04
regulation of B cell proliferation	GO:0030888		3.748E-07	2.873E-04
insulin receptor signaling pathway	GO:0008286		4.532E-07	2.606E-04
regulation of DNA metabolic process	GO:0051052		1.52E-06	6.99E-04
interphase of mitotic cell cycle	GO:0051329		1.645E-06	6.306E-04
interphase	GO:0051325		1.923E-06	6.317E-04
response to peptide hormone stimulus	GO:0043434		2.064E-06	5.933E-04
cellular response to insulin stimulus	GO:0032869		2.814E-06	7.192E-04
cell-substrate junction assembly	GO:0007044		4.097E-06	9.424E-04
apoptotic mitochondrial changes	GO:0008637		5.241E-06	1.096E-03