Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6557

score

Expression data for subnetwork 6557 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6557 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
CASP3		11	148	141	143	0.234	-0.032	-0.142	-0.097	-0.084
GNB3		2	743	1364	1363	0.046	-0.115	-0.028	0.013	-0.119
WASF1		7	256	1	47	0.162	-0.070	0.348	-0.037	0.130
GNG11		3	557	1364	1342	0.049	-0.039	0.135	0.004	0.106
NQO1		21	73	366	354	-0.115	0.069	-0.189	0.321	0.118
SUMO2		22	69	366	345	0.117	0.062	0.294	0.141	-0.096
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
TNXB		4	440	727	723	-0.169	-0.076	0.160	0.182	0.173
GNB1		1	1195	1534	1552	-0.182	0.105	-0.061	undef	0.135
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
GNB2		11	148	525	505	-0.091	0.082	-0.062	0.208	-0.062
KDM1A		1	1195	1534	1552	-0.010	-0.048	0.081	undef	0.038
WFDC2		5	360	236	242	-0.011	-0.011	0.333	-0.162	-0.157
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
CDC42		26	52	179	177	0.047	0.242	-0.027	0.040	-0.042
GNAZ		15	111	478	457	0.134	-0.116	0.308	0.267	0.011
CRCT1		2	743	727	734	0.135	0.050	0.000	-0.103	0.154
SIVA1		3	557	1055	1043	0.157	-0.103	0.190	undef	-0.042
FOSB		5	360	1534	1501	-0.033	0.046	0.129	-0.104	0.095
LAMA4		13	124	696	670	-0.016	0.138	0.209	0.172	0.343
MMP1		11	148	366	360	0.192	0.014	0.036	0.044	0.260
FABP5		3	557	1534	1516	0.152	-0.177	0.225	-0.118	0.141
PKMYT1		7	256	1510	1463	0.175	-0.143	0.046	0.105	-0.070
BRCA1		3	557	1534	1516	-0.201	-0.078	-0.087	-0.166	0.168
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
GNAI1		1	1195	1534	1552	-0.001	-0.046	0.153	0.146	0.139
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
RBL1		21	73	1	27	0.078	undef	undef	0.051	undef
GNB4		1	1195	1534	1552	0.036	0.020	undef	-0.064	undef
GNG10		3	557	1190	1182	0.239	0.028	0.350	0.035	0.183
KPNA2		1	1195	1534	1552	0.233	-0.081	0.087	0.064	-0.090
FOSL1		11	148	366	360	-0.040	0.164	0.010	0.128	0.005
PTN		24	62	236	225	undef	0.022	0.000	0.054	-0.092
MAGEH1		1	1195	1534	1552	0.158	0.028	0.025	-0.016	0.288
ATF7		28	47	179	175	0.085	0.115	-0.088	0.172	-0.092
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
PSEN1		10	167	366	362	-0.041	0.110	undef	0.083	undef
S100A2		6	301	1	52	0.005	0.047	0.137	-0.029	-0.008
GOLM1		8	222	1534	1489	0.109	0.161	-0.217	0.170	-0.060
APLP1		8	222	727	703	0.284	0.043	-0.105	-0.121	-0.190
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
GNB5		9	196	1131	1100	-0.059	0.026	0.064	0.284	0.103
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
STC2		5	360	236	242	-0.009	0.056	0.181	-0.185	0.016
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
CNTN3		1	1195	1534	1552	-0.064	-0.015	undef	0.185	undef
ERRFI1		10	167	412	408	0.076	0.215	undef	-0.043	undef
RIPK3		19	85	179	186	-0.014	0.040	undef	0.173	undef
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
NMT2		7	256	906	876	0.077	-0.296	0.134	-0.124	0.217
TFF1		7	256	957	928	0.106	0.022	0.088	-0.033	-0.244
RAD51		13	124	727	699	0.146	-0.098	0.135	-0.070	0.061
ZHX1		5	360	1364	1328	0.094	-0.187	undef	undef	undef
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
HIPK3		9	196	1461	1417	0.069	0.005	-0.027	undef	0.175
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
DDIT3		1	1195	1534	1552	0.166	-0.089	-0.021	0.062	-0.015
PKIA		11	148	780	759	-0.120	0.085	0.249	0.164	0.044
NRSN2		1	1195	1534	1552	0.025	-0.069	-0.107	undef	0.059

GO Enrichment output for subnetwork 6557 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
elastic fiber assembly	GO:0048251		3.333E-18	8.143E-15
collagen metabolic process	GO:0032963		7.601E-15	9.285E-12
multicellular organismal macromolecule metabolic process	GO:0044259		1.893E-14	1.542E-11
aging	GO:0007568		5.062E-14	3.092E-11
multicellular organismal metabolic process	GO:0044236		9.197E-14	4.494E-11
extracellular matrix organization	GO:0030198		1.176E-11	4.789E-09
positive regulation of smooth muscle cell proliferation	GO:0048661		2.718E-11	9.487E-09
regulation of lipid kinase activity	GO:0043550		6.483E-11	1.98E-08
regulation of smooth muscle cell proliferation	GO:0048660		1.744E-10	4.734E-08
response to protein stimulus	GO:0051789		2.804E-10	6.85E-08
hormone-mediated signaling	GO:0009755		5.346E-10	1.187E-07

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
elastic fiber assembly	GO:0048251		8.473E-16	2.039E-12
collagen metabolic process	GO:0032963		7.031E-13	8.459E-10
multicellular organismal macromolecule metabolic process	GO:0044259		1.601E-12	1.284E-09
multicellular organismal metabolic process	GO:0044236		6.636E-12	3.991E-09
aging	GO:0007568		9.953E-11	4.789E-08
extracellular matrix organization	GO:0030198		4.512E-10	1.809E-07
hormone-mediated signaling	GO:0009755		4.719E-10	1.622E-07
release of cytochrome c from mitochondria	GO:0001836		2.691E-09	8.093E-07
DNA damage response. signal transduction	GO:0042770		7.574E-09	2.025E-06
interphase of mitotic cell cycle	GO:0051329		8.602E-09	2.07E-06
regulation of DNA metabolic process	GO:0051052		1.015E-08	2.221E-06

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
elastic fiber assembly	GO:0048251		8.204E-15	1.887E-11
collagen metabolic process	GO:0032963		6.775E-12	7.792E-09
multicellular organismal macromolecule metabolic process	GO:0044259		1.584E-11	1.214E-08
multicellular organismal metabolic process	GO:0044236		6.812E-11	3.917E-08
aging	GO:0007568		7.813E-10	3.594E-07
extracellular matrix organization	GO:0030198		2.924E-09	1.121E-06
extracellular structure organization	GO:0043062		7.938E-09	2.608E-06
release of cytochrome c from mitochondria	GO:0001836		1.362E-08	3.915E-06
regulation of lipid kinase activity	GO:0043550		4.241E-08	1.084E-05
regulation of DNA metabolic process	GO:0051052		4.245E-08	9.763E-06
apoptotic mitochondrial changes	GO:0008637		5.717E-08	1.195E-05

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
hormone-mediated signaling	GO:0009755		6.514E-09	1.2E-05
response to hormone stimulus	GO:0009725		2.555E-08	2.354E-05
release of cytochrome c from mitochondria	GO:0001836		1.557E-07	9.565E-05
cell cycle checkpoint	GO:0000075		3.544E-07	1.633E-04
regulation of mitotic cell cycle	GO:0007346		4.603E-07	1.697E-04
apoptotic mitochondrial changes	GO:0008637		4.622E-07	1.42E-04
cellular response to hormone stimulus	GO:0032870		7.187E-07	1.892E-04
regulation of DNA metabolic process	GO:0051052		1.193E-06	2.749E-04
interphase of mitotic cell cycle	GO:0051329		1.345E-06	2.755E-04
aging	GO:0007568		2.198E-06	4.051E-04
prostate gland development	GO:0030850		3.362E-06	5.633E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
elastic fiber assembly	GO:0048251		8.204E-15	1.887E-11
collagen metabolic process	GO:0032963		6.775E-12	7.792E-09
multicellular organismal macromolecule metabolic process	GO:0044259		1.584E-11	1.214E-08
multicellular organismal metabolic process	GO:0044236		6.812E-11	3.917E-08
aging	GO:0007568		7.813E-10	3.594E-07
extracellular matrix organization	GO:0030198		2.924E-09	1.121E-06
extracellular structure organization	GO:0043062		7.938E-09	2.608E-06
release of cytochrome c from mitochondria	GO:0001836		1.362E-08	3.915E-06
regulation of lipid kinase activity	GO:0043550		4.241E-08	1.084E-05
regulation of DNA metabolic process	GO:0051052		4.245E-08	9.763E-06
apoptotic mitochondrial changes	GO:0008637		5.717E-08	1.195E-05