Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6556

score

Expression data for subnetwork 6556 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6556 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
SHOX		1	1195	1547	1563	-0.113	-0.061	0.000	-0.004	-0.092
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
MAGED1		5	360	842	828	-0.141	0.284	-0.152	0.240	0.045
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
CSNK2A1		3	557	1510	1486	-0.215	0.029	undef	0.122	undef
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
GSTP1		14	117	1	34	0.222	-0.166	0.201	0.126	-0.136
EEF1G		8	222	882	869	0.116	-0.224	0.131	0.086	0.082
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
GOLM1		8	222	1534	1489	0.109	0.161	-0.217	0.170	-0.060
ABCC9		1	1195	1547	1563	0.067	-0.089	0.000	0.181	-0.092
SMC3		5	360	614	612	0.105	-0.096	0.238	0.137	0.047
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
CDH1		37	32	296	278	-0.227	0.187	-0.236	0.137	-0.024
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
ST18		16	104	236	227	-0.131	0.028	-0.088	0.186	0.151
POLR1B		1	1195	1547	1563	0.062	-0.036	-0.079	undef	0.139
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
ZFPM2		5	360	525	518	0.001	0.092	0.113	-0.099	0.379
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
SYT1		11	148	1	39	-0.079	0.051	0.038	0.189	-0.124
NFATC1		1	1195	1547	1563	-0.102	-0.086	0.050	0.215	0.206
HDAC5		2	743	882	892	0.022	0.029	-0.165	-0.125	0.009
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
ARIH2		5	360	236	242	-0.131	0.196	-0.071	-0.127	-0.016
POLR2A		6	301	1547	1510	-0.107	0.247	0.091	0.040	0.141
POLR2C		1	1195	1547	1563	-0.130	0.002	-0.204	undef	0.168
PAF1		1	1195	1547	1563	-0.026	0.025	-0.023	0.124	-0.018
MUC1		13	124	1547	1490	0.063	0.214	-0.190	undef	-0.132
RBL1		21	73	1	27	0.078	undef	undef	0.051	undef
NAT1		3	557	658	654	0.175	0.043	0.032	-0.014	0.011
GADD45B		8	222	318	325	0.158	0.122	0.067	0.060	0.212
CCNA1		33	37	412	393	0.174	0.092	0.078	0.055	-0.098
DLX5		1	1195	1547	1563	-0.026	0.044	-0.151	0.094	0.140
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
PUS1		1	1195	1547	1563	-0.026	0.045	0.044	undef	0.065
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
SHOX2		1	1195	1547	1563	-0.132	0.165	0.023	0.008	0.349
HSPB1		22	69	1	25	0.053	0.169	0.017	0.179	0.161
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
HDAC2		13	124	318	316	0.079	-0.094	0.148	0.089	0.037

GO Enrichment output for subnetwork 6556 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of epithelial cell proliferation	GO:0050678		4.801E-07	1.173E-03
activation of MAPKKK activity	GO:0000185		7.831E-07	9.566E-04
positive regulation of epithelial cell proliferation	GO:0050679		1.331E-06	1.084E-03
phosphoinositide 3-kinase cascade	GO:0014065		2.182E-06	1.332E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		3.264E-06	1.595E-03
Wnt receptor signaling pathway through beta-catenin	GO:0060070		6.38E-06	2.598E-03
androgen receptor signaling pathway	GO:0030521		7.992E-06	2.789E-03
epithelial to mesenchymal transition	GO:0001837		1.742E-05	5.319E-03
activation of MAPKK activity	GO:0000186		2.59E-05	7.03E-03
response to UV	GO:0009411		3.935E-05	9.613E-03
steroid hormone receptor signaling pathway	GO:0030518		8.077E-05	0.01793734

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of epithelial cell proliferation	GO:0050678		5.111E-07	1.23E-03
activation of MAPKKK activity	GO:0000185		9.406E-07	1.132E-03
positive regulation of epithelial cell proliferation	GO:0050679		1.171E-06	9.393E-04
phosphoinositide 3-kinase cascade	GO:0014065		2.62E-06	1.576E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		3.919E-06	1.886E-03
Wnt receptor signaling pathway through beta-catenin	GO:0060070		5.584E-06	2.239E-03
androgen receptor signaling pathway	GO:0030521		9.067E-06	3.117E-03
epithelial to mesenchymal transition	GO:0001837		2.089E-05	6.283E-03
activation of MAPKK activity	GO:0000186		2.564E-05	6.856E-03
cell cycle arrest	GO:0007050		3.388E-05	8.153E-03
response to UV	GO:0009411		4.297E-05	9.399E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of epithelial cell proliferation	GO:0050678		1.293E-06	2.974E-03
positive regulation of epithelial cell proliferation	GO:0050679		2E-06	2.3E-03
activation of MAPKKK activity	GO:0000185		2.274E-06	1.744E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		6.323E-06	3.636E-03
phosphoinositide 3-kinase cascade	GO:0014065		6.323E-06	2.909E-03
activation of MAPKK activity	GO:0000186		4.023E-05	0.01542227
cell cycle arrest	GO:0007050		6.524E-05	0.02143601
response to UV	GO:0009411		7.609E-05	0.02187481
G2/M transition of mitotic cell cycle	GO:0000086		1.434E-04	0.03664296
cellular response to extracellular stimulus	GO:0031668		1.434E-04	0.03297866
regulation of fibroblast proliferation	GO:0048145		1.654E-04	0.03459118

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of epithelial cell proliferation	GO:0050678		2.367E-07	4.363E-04
positive regulation of epithelial cell proliferation	GO:0050679		4.806E-07	4.429E-04
positive regulation of protein kinase activity	GO:0045860		3.25E-06	1.997E-03
positive regulation of transferase activity	GO:0051347		3.72E-06	1.714E-03
activation of MAPKK activity	GO:0000186		1.771E-05	6.529E-03
activation of protein kinase activity	GO:0032147		1.838E-05	5.647E-03
lymphocyte differentiation	GO:0030098		3.619E-05	9.527E-03
B cell differentiation	GO:0030183		8.555E-05	0.01970825
leukocyte differentiation	GO:0002521		9.002E-05	0.01843326
cell cycle arrest	GO:0007050		9.002E-05	0.01658994
positive regulation of MAP kinase activity	GO:0043406		9.002E-05	0.01508176

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of epithelial cell proliferation	GO:0050678		1.293E-06	2.974E-03
positive regulation of epithelial cell proliferation	GO:0050679		2E-06	2.3E-03
activation of MAPKKK activity	GO:0000185		2.274E-06	1.744E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		6.323E-06	3.636E-03
phosphoinositide 3-kinase cascade	GO:0014065		6.323E-06	2.909E-03
activation of MAPKK activity	GO:0000186		4.023E-05	0.01542227
cell cycle arrest	GO:0007050		6.524E-05	0.02143601
response to UV	GO:0009411		7.609E-05	0.02187481
G2/M transition of mitotic cell cycle	GO:0000086		1.434E-04	0.03664296
cellular response to extracellular stimulus	GO:0031668		1.434E-04	0.03297866
regulation of fibroblast proliferation	GO:0048145		1.654E-04	0.03459118