Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6536

score

Expression data for subnetwork 6536 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6536 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
FBXW11		3	557	658	654	0.154	0.225	0.262	undef	0.169
PSMB5		2	743	692	713	-0.163	0.195	undef	0.137	undef
SH2D3A		3	557	1510	1486	0.197	0.141	-0.106	-0.012	0.121
HDGF		1	1195	1752	1757	0.171	-0.106	-0.048	0.015	-0.055
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
FOXA3		12	140	318	322	0.192	0.289	undef	-0.171	undef
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
LSM4		1	1195	1752	1757	0.098	-0.124	-0.038	0.063	-0.057
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PSEN1		10	167	366	362	-0.041	0.110	undef	0.083	undef
GLRX3		1	1195	1752	1757	-0.053	0.027	-0.088	-0.057	-0.096
NLE1		3	557	882	871	0.138	-0.086	-0.018	0.001	0.044
RSRC1		21	73	366	354	0.023	0.104	0.105	-0.098	0.212
HNRPLL		1	1195	1752	1757	-0.041	-0.070	undef	undef	undef
CCNE1		4	440	1083	1067	0.245	-0.141	-0.077	undef	-0.018
IGSF1		1	1195	1752	1757	0.117	0.024	0.056	0.068	-0.107
ARHGEF16		10	167	296	283	0.096	0.036	-0.047	0.200	0.038
CALM2		2	743	957	958	0.076	0.056	0.104	-0.004	0.086
IQCG		1	1195	1752	1757	-0.036	0.041	undef	undef	undef
PSMA6		5	360	842	828	0.280	-0.118	-0.018	undef	-0.091
SUV39H2		8	222	318	325	0.150	-0.097	-0.057	undef	0.028
INHBB		1	1195	1752	1757	0.066	0.299	0.065	0.185	0.165
DDX6		4	440	1688	1656	0.028	0.162	0.157	-0.035	0.084
GPRIN2		16	104	179	190	0.084	0.078	0.012	0.054	0.114
FBXO33		1	1195	1752	1757	0.090	-0.072	undef	undef	undef
TCAP		1	1195	1752	1757	-0.089	0.061	-0.020	0.064	-0.029
TP53BP2		11	148	692	668	0.245	-0.012	0.129	0.021	0.017
CPSF6		6	301	318	330	0.164	0.052	0.091	0.129	-0.088
INHBA		2	743	1752	1744	0.151	0.188	0.037	0.150	0.143
SRPK2		3	557	1203	1187	0.076	0.183	-0.087	undef	0.054
SOS2		1	1195	1752	1757	0.128	0.098	-0.112	undef	0.036
CLEC11A		7	256	692	673	0.004	0.353	0.005	0.081	0.272
PLSCR1		10	167	412	408	0.202	-0.159	0.091	undef	-0.105
PDK1		10	167	1	40	0.183	-0.138	-0.041	-0.265	-0.126
PARP1		29	45	83	84	-0.036	-0.162	-0.089	0.238	0.012
MSTN		1	1195	1752	1757	-0.113	0.055	-0.118	0.103	0.153
SOS1		5	360	478	476	-0.049	0.002	-0.007	0.160	-0.042
ESRRG		6	301	614	602	-0.205	0.197	-0.007	0.155	-0.085
AKT2		28	47	412	394	0.110	-0.118	-0.003	0.088	-0.092
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
RNPS1		1	1195	1752	1757	0.063	-0.151	-0.083	0.031	0.042
ACTN1		18	86	318	313	0.016	0.347	0.068	0.100	0.314
INHA		1	1195	1752	1757	0.200	-0.058	-0.091	-0.055	0.153
PPEF2		1	1195	1752	1757	-0.089	-0.184	-0.088	0.220	-0.092
ALCAM		8	222	1	46	-0.208	0.193	0.067	0.088	-0.010
IRS4		32	40	236	224	0.115	-0.111	-0.088	0.096	0.142
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
YWHAG		24	62	296	279	0.067	0.024	undef	0.266	undef
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
SH3RF1		6	301	1222	1194	0.144	0.238	undef	undef	undef
GADD45B		8	222	318	325	0.158	0.122	0.067	0.060	0.212
FSTL3		1	1195	1752	1757	0.051	0.155	0.001	0.078	0.003
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
ACTN4		14	117	318	315	0.035	0.180	undef	-0.048	undef
SKP1		2	743	727	734	0.143	0.037	0.055	0.148	-0.110
PRPF4		1	1195	1752	1757	0.232	-0.079	0.196	0.133	-0.045
MDN1		1	1195	1752	1757	-0.070	-0.071	0.124	undef	0.239
PPARGC1A		1	1195	1752	1757	0.066	-0.123	0.243	0.157	0.112
SFN		25	59	478	454	0.141	0.270	0.023	-0.102	0.101
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
SRPK1		2	743	1203	1206	0.085	-0.010	0.143	0.037	0.191
TRIM29		8	222	296	287	0.161	0.240	-0.150	-0.077	0.024

GO Enrichment output for subnetwork 6536 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		3.263E-08	7.972E-05
negative regulation of cytokine biosynthetic process	GO:0042036		3.406E-07	4.161E-04
negative regulation of protein kinase activity	GO:0006469		3.869E-07	3.151E-04
negative regulation of kinase activity	GO:0033673		4.218E-07	2.576E-04
negative regulation of transferase activity	GO:0051348		5.88E-07	2.873E-04
negative regulation of hormone secretion	GO:0046888		5.902E-07	2.403E-04
hemoglobin biosynthetic process	GO:0042541		6.473E-07	2.259E-04
cellular glucose homeostasis	GO:0001678		6.473E-07	1.977E-04
negative regulation of macrophage differentiation	GO:0045650		6.473E-07	1.757E-04
positive regulation of hormone secretion	GO:0046887		9.551E-07	2.333E-04
activation of MAPKKK activity	GO:0000185		1.291E-06	2.867E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		4.268E-08	1.027E-04
negative regulation of cytokine biosynthetic process	GO:0042036		4.097E-07	4.929E-04
negative regulation of protein kinase activity	GO:0006469		4.227E-07	3.39E-04
negative regulation of kinase activity	GO:0033673		4.62E-07	2.779E-04
negative regulation of transferase activity	GO:0051348		6.504E-07	3.13E-04
negative regulation of hormone secretion	GO:0046888		7.097E-07	2.846E-04
hemoglobin biosynthetic process	GO:0042541		7.452E-07	2.561E-04
cellular glucose homeostasis	GO:0001678		7.452E-07	2.241E-04
negative regulation of macrophage differentiation	GO:0045650		7.452E-07	1.992E-04
positive regulation of hormone secretion	GO:0046887		1.148E-06	2.763E-04
activation of MAPKKK activity	GO:0000185		1.486E-06	3.25E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.257E-08	1.439E-04
negative regulation of cytokine biosynthetic process	GO:0042036		3.773E-07	4.339E-04
negative regulation of hormone secretion	GO:0046888		7.149E-07	5.481E-04
positive regulation of hormone secretion	GO:0046887		1.237E-06	7.114E-04
activation of MAPKKK activity	GO:0000185		2.274E-06	1.046E-03
negative regulation of B cell activation	GO:0050869		2.274E-06	8.719E-04
ovarian follicle development	GO:0001541		3.065E-06	1.007E-03
hemoglobin metabolic process	GO:0020027		3.966E-06	1.14E-03
interphase of mitotic cell cycle	GO:0051329		4.076E-06	1.042E-03
negative regulation of phosphorylation	GO:0042326		4.5E-06	1.035E-03
interphase	GO:0051325		4.662E-06	9.747E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of cytokine biosynthetic process	GO:0042036		1.089E-07	2.006E-04
positive regulation of hormone secretion	GO:0046887		2.828E-07	2.606E-04
negative regulation of lymphocyte activation	GO:0051250		2.828E-07	1.737E-04
negative regulation of hormone secretion	GO:0046888		6.078E-07	2.8E-04
negative regulation of leukocyte activation	GO:0002695		6.078E-07	2.24E-04
ovarian follicle development	GO:0001541		1.151E-06	3.535E-04
negative regulation of cell activation	GO:0050866		1.151E-06	3.03E-04
hemoglobin biosynthetic process	GO:0042541		1.671E-06	3.85E-04
cellular glucose homeostasis	GO:0001678		1.671E-06	3.422E-04
negative regulation of protein kinase activity	GO:0006469		1.714E-06	3.16E-04
negative regulation of kinase activity	GO:0033673		1.966E-06	3.294E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.257E-08	1.439E-04
negative regulation of cytokine biosynthetic process	GO:0042036		3.773E-07	4.339E-04
negative regulation of hormone secretion	GO:0046888		7.149E-07	5.481E-04
positive regulation of hormone secretion	GO:0046887		1.237E-06	7.114E-04
activation of MAPKKK activity	GO:0000185		2.274E-06	1.046E-03
negative regulation of B cell activation	GO:0050869		2.274E-06	8.719E-04
ovarian follicle development	GO:0001541		3.065E-06	1.007E-03
hemoglobin metabolic process	GO:0020027		3.966E-06	1.14E-03
interphase of mitotic cell cycle	GO:0051329		4.076E-06	1.042E-03
negative regulation of phosphorylation	GO:0042326		4.5E-06	1.035E-03
interphase	GO:0051325		4.662E-06	9.747E-04