Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6485

score

Expression data for subnetwork 6485 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6485 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
SF3B1		18	86	296	280	-0.154	0.126	-0.073	-0.131	-0.204
EPHA4		1	1195	1954	1959	-0.061	-0.095	-0.008	0.042	-0.113
SLC2A1		7	256	236	237	0.205	0.143	-0.050	-0.023	0.086
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
GIPC1		4	440	1396	1379	0.185	0.124	-0.045	-0.095	0.006
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
SDC1		2	743	1954	1933	0.172	0.241	-0.088	0.179	0.059
LTF		3	557	1222	1210	-0.082	0.060	-0.268	-0.081	-0.280
IGFBP7		1	1195	1954	1959	0.079	0.072	0.141	0.014	0.151
AP1M2		1	1195	1954	1959	-0.082	0.154	-0.068	0.005	0.056
AP2B1		6	301	780	764	-0.070	-0.106	0.070	0.252	0.094
EPHB6		1	1195	1954	1959	0.008	0.042	-0.219	0.152	-0.059
TUBA4A		7	256	1	47	0.157	0.136	-0.010	undef	0.156
METAP2		2	743	1294	1286	0.067	0.050	0.177	undef	-0.085
SAT1		6	301	236	239	0.219	0.010	-0.066	-0.119	0.063
LRP1		2	743	1954	1933	-0.138	0.026	0.119	0.063	0.112
FEZ1		8	222	141	149	0.047	-0.020	0.154	0.165	-0.128
BUB1B		4	440	1010	991	0.050	-0.164	0.037	-0.101	0.148
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
FGFR1		26	52	638	615	-0.036	0.200	0.087	undef	-0.015
SRSF1		1	1195	1954	1959	0.065	-0.077	0.127	undef	-0.085
TUBA1B		6	301	590	582	0.116	0.094	0.249	0.101	0.128
CDC16		2	743	1010	1007	0.086	-0.029	0.095	0.029	0.022
SMAD2		4	440	590	585	-0.039	-0.199	0.076	-0.003	0.247
LUC7L3		16	104	296	281	0.043	0.237	0.175	0.135	0.074
LAMB1		3	557	1077	1068	-0.041	0.226	-0.020	-0.011	0.238
FGF7		10	167	780	760	-0.094	0.237	0.070	0.038	0.083
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
USP11		7	256	478	462	-0.144	0.106	0.121	0.218	-0.044
STARD13		2	743	1879	1866	-0.083	0.006	0.126	0.290	0.028
PTN		24	62	236	225	undef	0.022	0.000	0.054	-0.092
EFNB2		1	1195	1954	1959	-0.070	0.156	0.193	-0.135	-0.116
POU3F2		17	95	928	891	0.135	0.114	0.155	0.253	0.040
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
RSF1		2	743	780	787	-0.032	0.063	0.103	0.218	0.021
KIAA1377		18	86	141	136	-0.095	0.116	undef	0.198	undef
POM121		7	256	780	763	-0.197	0.101	0.079	undef	0.017
CD59		1	1195	1954	1959	-0.032	0.228	0.013	-0.039	-0.010
GLI3		21	73	478	456	-0.138	0.080	-0.007	0.282	-0.018
MAP1A		12	140	1	36	-0.045	0.143	-0.054	0.162	0.147
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
COL6A1		5	360	780	767	-0.112	0.193	-0.013	undef	0.039
ACTA2		2	743	1949	1932	-0.147	0.256	0.125	0.102	0.220
BUB1		6	301	590	582	0.246	-0.172	0.013	-0.007	0.170
SDCBP		3	557	1433	1415	-0.010	-0.059	-0.141	0.279	0.131
LUC7L2		1	1195	1954	1959	0.116	-0.120	0.065	-0.168	0.107
INHBA		2	743	1752	1744	0.151	0.188	0.037	0.150	0.143
PRPF40A		2	743	478	490	-0.153	-0.047	-0.133	undef	0.155
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
FGFR4		21	73	179	183	-0.011	0.188	-0.089	-0.018	-0.049
MICAL2		4	440	1659	1629	-0.012	0.143	-0.042	-0.145	0.161
BUB3		5	360	478	476	0.133	-0.053	0.165	0.195	0.181
TAF1D		10	167	590	566	0.141	0.113	0.041	undef	0.059
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
NEUROD1		1	1195	1954	1959	0.135	0.022	0.000	0.044	undef
HEBP2		2	743	83	123	0.207	-0.044	-0.153	-0.038	0.013
MAPK8IP1		4	440	1576	1543	-0.012	0.058	-0.020	0.282	-0.049
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
GALP		1	1195	1954	1959	0.136	-0.069	undef	undef	undef
TPR		11	148	727	701	-0.130	0.120	-0.036	-0.085	0.156
PDCD6		10	167	1	40	0.091	-0.060	undef	undef	undef
CDC27		6	301	1010	986	0.156	-0.086	-0.029	0.006	0.348
HTT		14	117	141	140	-0.016	-0.015	0.075	0.092	-0.093
FGFR2		7	256	179	201	-0.024	-0.001	0.129	undef	0.009
LEMD3		1	1195	1954	1959	0.196	0.154	0.081	0.082	0.236
PITX1		3	557	236	265	0.256	0.046	0.091	-0.068	0.139
POLR1C		3	557	1323	1309	0.176	-0.210	0.181	-0.126	0.038
DNAJA2		3	557	780	781	0.054	0.063	-0.152	-0.019	0.081
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6485 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
fibroblast growth factor receptor signaling pathway	GO:0008543		2.098E-08	5.125E-05
negative regulation of ligase activity	GO:0051352		3.96E-06	4.838E-03
negative regulation of B cell activation	GO:0050869		4.49E-06	3.656E-03
regulation of protein export from nucleus	GO:0046825		7.821E-06	4.777E-03
G1/S transition of mitotic cell cycle	GO:0000082		9.258E-06	4.524E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		9.509E-06	3.872E-03
regulation of T cell differentiation in the thymus	GO:0033081		1.246E-05	4.348E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.246E-05	3.804E-03
positive regulation of epithelial cell proliferation	GO:0050679		1.328E-05	3.606E-03
negative regulation of phosphorylation	GO:0042326		1.328E-05	3.245E-03
regulation of ligase activity	GO:0051340		1.356E-05	3.011E-03

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
fibroblast growth factor receptor signaling pathway	GO:0008543		5.574E-07	1.341E-03
negative regulation of B cell activation	GO:0050869		5.517E-06	6.637E-03
negative regulation of ligase activity	GO:0051352		5.837E-06	4.681E-03
regulation of protein export from nucleus	GO:0046825		9.607E-06	5.779E-03
positive regulation of epithelial cell proliferation	GO:0050679		1.208E-05	5.814E-03
G1/S transition of mitotic cell cycle	GO:0000082		1.286E-05	5.156E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		1.396E-05	4.799E-03
regulation of T cell differentiation in the thymus	GO:0033081		1.53E-05	4.601E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.53E-05	4.09E-03
negative regulation of phosphorylation	GO:0042326		1.737E-05	4.18E-03
regulation of ligase activity	GO:0051340		1.987E-05	4.346E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
fibroblast growth factor receptor signaling pathway	GO:0008543		1.73E-06	3.98E-03
regulation of protein export from nucleus	GO:0046825		1.264E-05	0.01454077
negative regulation of B cell activation	GO:0050869		1.264E-05	9.694E-03
negative regulation of ligase activity	GO:0051352		1.465E-05	8.423E-03
positive regulation of epithelial cell proliferation	GO:0050679		1.923E-05	8.847E-03
G1/S transition of mitotic cell cycle	GO:0000082		3.43E-05	0.01315014
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.495E-05	0.01148455
regulation of T cell differentiation in the thymus	GO:0033081		3.495E-05	0.01004898
phosphoinositide 3-kinase cascade	GO:0014065		3.495E-05	8.932E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		3.518E-05	8.092E-03
negative regulation of phosphorylation	GO:0042326		4.277E-05	8.942E-03

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of epithelial cell proliferation	GO:0050679		2.968E-06	5.47E-03
lung development	GO:0030324		8.092E-06	7.457E-03
respiratory tube development	GO:0030323		1.056E-05	6.49E-03
respiratory system development	GO:0060541		1.056E-05	4.868E-03
negative regulation of cell cycle process	GO:0010948		3.51E-05	0.01293806
regulation of intracellular protein transport	GO:0033157		3.523E-05	0.01082005
anterior/posterior pattern formation	GO:0009952		3.646E-05	9.6E-03
cell fate commitment	GO:0045165		4.421E-05	0.01018501
regulation of nucleocytoplasmic transport	GO:0046822		4.832E-05	9.894E-03
regulation of epithelial cell proliferation	GO:0050678		6.465E-05	0.01191427
positive regulation of nucleocytoplasmic transport	GO:0046824		6.82E-05	0.0114264

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
fibroblast growth factor receptor signaling pathway	GO:0008543		1.73E-06	3.98E-03
regulation of protein export from nucleus	GO:0046825		1.264E-05	0.01454077
negative regulation of B cell activation	GO:0050869		1.264E-05	9.694E-03
negative regulation of ligase activity	GO:0051352		1.465E-05	8.423E-03
positive regulation of epithelial cell proliferation	GO:0050679		1.923E-05	8.847E-03
G1/S transition of mitotic cell cycle	GO:0000082		3.43E-05	0.01315014
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.495E-05	0.01148455
regulation of T cell differentiation in the thymus	GO:0033081		3.495E-05	0.01004898
phosphoinositide 3-kinase cascade	GO:0014065		3.495E-05	8.932E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		3.518E-05	8.092E-03
negative regulation of phosphorylation	GO:0042326		4.277E-05	8.942E-03