Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6410

score

Expression data for subnetwork 6410 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6410 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
MAPK8		8	222	696	677	0.153	0.200	0.249	-0.066	0.138
CASP3		11	148	141	143	0.234	-0.032	-0.142	-0.097	-0.084
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
NF1		9	196	552	541	0.110	-0.052	-0.032	0.090	-0.094
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
MYH9		4	440	1131	1108	-0.103	0.227	0.007	-0.150	0.165
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
KCTD5		1	1195	2163	2167	-0.038	-0.128	-0.143	-0.073	0.060
HSPA1A		2	743	648	666	0.030	0.164	0.070	-0.023	0.046
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
GTPBP2		2	743	1203	1206	0.211	0.033	-0.132	0.119	-0.002
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
CDH1		37	32	296	278	-0.227	0.187	-0.236	0.137	-0.024
DPYSL2		1	1195	2163	2167	-0.095	-0.037	0.296	0.051	0.104
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
CDK6		16	104	318	314	-0.229	0.107	-0.028	-0.118	0.104
SRPK2		3	557	1203	1187	0.076	0.183	-0.087	undef	0.054
SHOC2		1	1195	2163	2167	0.162	-0.084	0.189	0.071	0.045
GAPDH		11	148	141	143	0.159	-0.040	-0.053	0.088	0.029
NRAS		2	743	2090	2082	0.090	-0.211	-0.054	0.076	0.021
PFKFB3		3	557	1659	1632	0.301	0.085	0.328	0.056	0.331
ERBB2IP		1	1195	2163	2167	0.073	0.160	0.087	-0.036	0.200
ALCAM		8	222	1	46	-0.208	0.193	0.067	0.088	-0.010
KIAA0020		2	743	1141	1144	0.071	-0.112	0.018	-0.140	-0.017
STAT2		1	1195	2163	2167	0.061	-0.008	0.000	0.176	0.155
MYH11		2	743	2163	2145	0.084	-0.003	0.211	undef	0.094
DPYSL3		1	1195	2163	2167	-0.065	0.133	0.021	0.125	0.261
MUC1		13	124	1547	1490	0.063	0.214	-0.190	undef	-0.132
RBL1		21	73	1	27	0.078	undef	undef	0.051	undef
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
SSB		2	743	1803	1782	-0.001	-0.058	0.147	-0.071	-0.161
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
COPG		5	360	570	562	0.004	0.080	-0.158	undef	0.280
SNCG		3	557	236	265	0.080	-0.086	0.088	-0.090	-0.226
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
COPZ2		2	743	1629	1614	0.081	0.013	0.127	0.126	0.123
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
PHB2		2	743	1364	1363	0.001	-0.154	0.071	-0.107	-0.054
RALGDS		5	360	2024	1972	-0.011	0.199	0.033	undef	-0.009
MEF2A		4	440	614	618	0.022	0.036	0.265	-0.094	0.124
DNAJB1		1	1195	2163	2167	-0.007	0.052	0.039	0.054	-0.007
RBM17		1	1195	2163	2167	0.174	-0.322	undef	undef	undef
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
SCHIP1		10	167	478	459	0.130	0.136	0.105	-0.022	0.198
BNIP3		11	148	236	232	0.193	0.071	0.102	0.119	0.285
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
RRAS2		7	256	1681	1633	0.155	0.076	0.289	0.044	0.031
CASP1		6	301	552	544	0.204	-0.166	-0.046	undef	-0.034
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
ZC4H2		17	95	570	546	0.065	0.061	0.304	-0.072	0.059
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
SKP2		29	45	1	23	0.092	-0.043	0.237	undef	-0.009
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
NR2F1		25	59	83	92	-0.252	0.113	0.133	-0.116	0.207
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
CASP7		6	301	614	602	0.216	0.095	0.255	undef	0.035
CXCR4		2	743	882	892	-0.103	-0.189	-0.094	-0.160	-0.010
KPNA1		9	196	141	147	0.007	0.152	-0.083	0.073	0.086
IKBKE		10	167	552	539	0.227	-0.041	-0.095	-0.197	0.079
CDC27		6	301	1010	986	0.156	-0.086	-0.029	0.006	0.348
CUL2		7	256	842	816	0.124	-0.192	-0.090	-0.035	0.166
HMGB2		2	743	2163	2145	0.214	-0.085	0.151	undef	-0.015
STAT5A		1	1195	2163	2167	0.025	-0.086	-0.174	-0.256	-0.072
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6410 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		1.682E-10	4.109E-07
interphase of mitotic cell cycle	GO:0051329		1.995E-10	2.436E-07
response to UV	GO:0009411		7.521E-10	6.124E-07
DNA fragmentation involved in apoptosis	GO:0006309		2.914E-08	1.78E-05
phosphoinositide 3-kinase cascade	GO:0014065		6.297E-08	3.076E-05
apoptotic mitochondrial changes	GO:0008637		7.202E-08	2.933E-05
cell structure disassembly during apoptosis	GO:0006921		9.411E-08	3.284E-05
apoptotic nuclear changes	GO:0030262		1.212E-07	3.702E-05
regulation of cell-matrix adhesion	GO:0001952		1.542E-07	4.186E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		1.873E-07	4.575E-05
motor axon guidance	GO:0008045		1.873E-07	4.159E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.641E-10	6.355E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.739E-10	3.294E-07
interphase	GO:0051325		3.606E-10	2.892E-07
response to UV	GO:0009411		8.981E-10	5.402E-07
DNA fragmentation involved in apoptosis	GO:0006309		3.982E-08	1.916E-05
phosphoinositide 3-kinase cascade	GO:0014065		8.107E-08	3.251E-05
apoptotic mitochondrial changes	GO:0008637		9.835E-08	3.38E-05
cell structure disassembly during apoptosis	GO:0006921		1.285E-07	3.864E-05
motor axon guidance	GO:0008045		1.452E-07	3.883E-05
apoptotic nuclear changes	GO:0030262		1.655E-07	3.981E-05
regulation of cell-matrix adhesion	GO:0001952		2.104E-07	4.602E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.001E-09	2.302E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.052E-09	1.21E-06
interphase	GO:0051325		1.26E-09	9.657E-07
response to light stimulus	GO:0009416		4.819E-08	2.771E-05
response to UV	GO:0009411		5.261E-08	2.42E-05
DNA fragmentation involved in apoptosis	GO:0006309		6.676E-08	2.559E-05
apoptotic mitochondrial changes	GO:0008637		1.87E-07	6.145E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		2.189E-07	6.293E-05
phosphoinositide 3-kinase cascade	GO:0014065		2.189E-07	5.594E-05
cell structure disassembly during apoptosis	GO:0006921		2.523E-07	5.802E-05
apoptotic nuclear changes	GO:0030262		2.523E-07	5.274E-05

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
T cell homeostasis	GO:0043029		1.431E-07	2.637E-04
lymphocyte homeostasis	GO:0002260		4.248E-07	3.915E-04
positive regulation of multicellular organism growth	GO:0040018		9.911E-07	6.089E-04
interphase of mitotic cell cycle	GO:0051329		1.187E-06	5.47E-04
response to light stimulus	GO:0009416		1.335E-06	4.921E-04
regulation of cell-substrate adhesion	GO:0010810		1.424E-06	4.375E-04
response to hypoxia	GO:0001666		1.497E-06	3.943E-04
response to oxygen levels	GO:0070482		1.676E-06	3.861E-04
regulation of cell adhesion	GO:0030155		1.871E-06	3.832E-04
leukocyte homeostasis	GO:0001776		2.691E-06	4.96E-04
peptidyl-amino acid modification	GO:0018193		2.848E-06	4.771E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.001E-09	2.302E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.052E-09	1.21E-06
interphase	GO:0051325		1.26E-09	9.657E-07
response to light stimulus	GO:0009416		4.819E-08	2.771E-05
response to UV	GO:0009411		5.261E-08	2.42E-05
DNA fragmentation involved in apoptosis	GO:0006309		6.676E-08	2.559E-05
apoptotic mitochondrial changes	GO:0008637		1.87E-07	6.145E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		2.189E-07	6.293E-05
phosphoinositide 3-kinase cascade	GO:0014065		2.189E-07	5.594E-05
cell structure disassembly during apoptosis	GO:0006921		2.523E-07	5.802E-05
apoptotic nuclear changes	GO:0030262		2.523E-07	5.274E-05