Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6367

score

Expression data for subnetwork 6367 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6367 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CCNE2		11	148	412	407	0.136	-0.178	0.241	undef	-0.055
CLDN5		2	743	806	806	-0.019	0.030	0.223	-0.002	0.037
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
NUP188		8	222	1116	1079	-0.187	0.094	0.058	0.161	-0.070
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
LCN2		1	1195	2293	2293	0.113	0.145	-0.098	0.074	-0.284
BACE1		1	1195	2293	2293	0.007	0.162	0.210	undef	0.090
TIMP4		2	743	366	395	0.050	0.044	0.193	-0.037	-0.153
SMAD7		5	360	1034	1004	-0.035	0.131	0.169	0.061	0.147
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
TJP1		8	222	318	325	-0.139	0.102	0.099	0.319	0.049
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
TTF1		2	743	1793	1779	0.031	0.244	0.114	0.231	0.008
HAPLN1		1	1195	2293	2293	0.064	0.036	0.176	undef	0.226
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
MCAM		1	1195	2293	2293	0.008	0.078	0.230	-0.086	0.109
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
TNNT1		3	557	1914	1877	undef	undef	undef	0.145	undef
RANBP1		2	743	842	854	0.063	-0.066	0.199	-0.107	-0.048
MMP2		3	557	1190	1182	-0.105	0.186	-0.024	undef	0.162
ST18		16	104	236	227	-0.131	0.028	-0.088	0.186	0.151
MPDZ		3	557	1846	1817	-0.110	0.062	0.231	0.291	0.167
INSM1		23	66	570	545	0.135	-0.184	-0.188	0.237	-0.032
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
FBXL2		2	743	1222	1215	0.151	0.089	0.089	undef	-0.116
MMP13		1	1195	2293	2293	0.162	0.112	-0.115	undef	0.177
SMAD6		2	743	1879	1866	-0.241	0.053	0.266	-0.043	0.070
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
TNFAIP6		3	557	1735	1718	0.102	0.234	0.077	-0.002	-0.073
TIMP2		2	743	1190	1189	-0.126	0.212	0.021	0.065	0.137
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
SKP2		29	45	1	23	0.092	-0.043	0.237	undef	-0.009
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
PTCH1		5	360	1190	1157	-0.184	0.047	0.121	-0.055	0.004
COL7A1		3	557	1222	1210	-0.052	0.240	0.233	-0.019	0.022
FLNA		50	20	1	14	0.081	0.107	0.148	0.268	0.126
IRS4		32	40	236	224	0.115	-0.111	-0.088	0.096	0.142
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
CDK5R1		17	95	552	521	-0.150	0.038	-0.096	0.121	0.091
ADAMTS5		2	743	412	439	-0.066	0.021	0.211	0.180	0.030
XPO1		2	743	1294	1286	0.031	-0.140	0.179	0.061	-0.082
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
ADAMTS3		1	1195	2293	2293	-0.106	-0.078	0.297	undef	0.024
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
ACAN		5	360	412	416	0.156	0.132	-0.024	-0.171	-0.083
DHFR		4	440	179	209	0.019	0.029	0.232	0.129	-0.050
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
SMURF1		5	360	682	671	-0.222	0.236	-0.049	undef	-0.006
G3BP1		7	256	1116	1082	0.060	-0.077	-0.017	0.155	-0.004
LAMC2		4	440	179	209	-0.063	0.307	-0.060	-0.148	0.055
CSNK1D		6	301	614	602	-0.222	-0.044	0.170	-0.088	0.013

GO Enrichment output for subnetwork 6367 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
glycine biosynthetic process	GO:0006545		1.217E-09	2.973E-06
response to UV	GO:0009411		9.021E-08	1.102E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.122E-07	9.135E-05
serine family amino acid biosynthetic process	GO:0009070		2.369E-07	1.447E-04
negative regulation of DNA metabolic process	GO:0051053		2.795E-07	1.365E-04
glycine metabolic process	GO:0006544		7.153E-07	2.912E-04
regulation of epithelial cell proliferation	GO:0050678		1.019E-06	3.555E-04
induction of apoptosis by intracellular signals	GO:0008629		1.019E-06	3.11E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.139E-06	3.092E-04
collagen catabolic process	GO:0030574		1.386E-06	3.386E-04
regulation of helicase activity	GO:0051095		2.159E-06	4.796E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
glycine biosynthetic process	GO:0006545		1.601E-09	3.852E-06
response to UV	GO:0009411		1.069E-07	1.286E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.667E-07	1.337E-04
serine family amino acid biosynthetic process	GO:0009070		2.229E-07	1.341E-04
negative regulation of DNA metabolic process	GO:0051053		3.905E-07	1.879E-04
glycine metabolic process	GO:0006544		7.322E-07	2.936E-04
regulation of epithelial cell proliferation	GO:0050678		1.127E-06	3.872E-04
induction of apoptosis by intracellular signals	GO:0008629		1.42E-06	4.271E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.588E-06	4.245E-04
collagen catabolic process	GO:0030574		1.817E-06	4.372E-04
regulation of helicase activity	GO:0051095		2.654E-06	5.804E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		2.96E-07	6.807E-04
serine family amino acid biosynthetic process	GO:0009070		3.777E-07	4.344E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.555E-07	4.259E-04
glycine metabolic process	GO:0006544		1.13E-06	6.498E-04
regulation of epithelial cell proliferation	GO:0050678		3.316E-06	1.525E-03
induction of apoptosis by intracellular signals	GO:0008629		3.771E-06	1.446E-03
collagen catabolic process	GO:0030574		5.321E-06	1.748E-03
G1/S transition of mitotic cell cycle	GO:0000082		5.44E-06	1.564E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.036E-06	1.798E-03
negative regulation of DNA replication	GO:0008156		9.593E-06	2.206E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.121E-05	2.344E-03

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
cell junction assembly	GO:0034329		1.275E-06	2.349E-03
cell junction organization	GO:0034330		3.848E-06	3.546E-03
cell-substrate junction assembly	GO:0007044		1.413E-05	8.679E-03
regulation of protein catabolic process	GO:0042176		2.336E-05	0.01076315
positive regulation of epithelial cell proliferation	GO:0050679		4.226E-05	0.0155758
regulation of catabolic process	GO:0009894		8.573E-05	0.0263323
epidermal growth factor receptor signaling pathway	GO:0007173		9.342E-05	0.02459501
BMP signaling pathway	GO:0030509		9.342E-05	0.02152063
positive regulation of MAP kinase activity	GO:0043406		1.011E-04	0.02070312
negative regulation of protein transport	GO:0051224		1.507E-04	0.02776901
T cell differentiation	GO:0030217		2.269E-04	0.03801737

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		2.96E-07	6.807E-04
serine family amino acid biosynthetic process	GO:0009070		3.777E-07	4.344E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.555E-07	4.259E-04
glycine metabolic process	GO:0006544		1.13E-06	6.498E-04
regulation of epithelial cell proliferation	GO:0050678		3.316E-06	1.525E-03
induction of apoptosis by intracellular signals	GO:0008629		3.771E-06	1.446E-03
collagen catabolic process	GO:0030574		5.321E-06	1.748E-03
G1/S transition of mitotic cell cycle	GO:0000082		5.44E-06	1.564E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.036E-06	1.798E-03
negative regulation of DNA replication	GO:0008156		9.593E-06	2.206E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.121E-05	2.344E-03