Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6331

score

Expression data for subnetwork 6331 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6331 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CCNE2		11	148	412	407	0.136	-0.178	0.241	undef	-0.055
PTPN21		5	360	1717	1677	0.027	0.177	0.214	0.205	0.119
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
MYH9		4	440	1131	1108	-0.103	0.227	0.007	-0.150	0.165
CSNK2B		3	557	318	341	0.001	-0.039	-0.004	0.115	0.033
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
PPP2R1B		6	301	141	152	0.042	0.002	-0.002	undef	0.112
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
DST		22	69	1	25	-0.094	0.343	0.065	-0.062	0.194
PLAU		12	140	179	192	0.187	0.153	0.141	0.072	0.192
GNAZ		15	111	478	457	0.134	-0.116	0.308	0.267	0.011
DLG1		6	301	457	452	-0.016	0.173	0.244	0.017	0.123
KRT5		10	167	806	780	-0.125	0.046	0.064	-0.006	-0.190
AKT1		16	104	236	227	0.045	0.126	-0.099	undef	-0.168
SERTAD4		8	222	1268	1225	0.173	0.169	undef	-0.050	undef
KATNAL1		1	1195	2197	2203	0.134	-0.174	undef	undef	undef
R3HDM1		4	440	318	337	-0.108	-0.192	-0.049	0.082	0.223
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
RCN2		3	557	412	430	0.059	0.051	0.176	0.008	-0.098
FGFR1		26	52	638	615	-0.036	0.200	0.087	undef	-0.015
YWHAG		24	62	296	279	0.067	0.024	undef	0.266	undef
MYH11		2	743	2163	2145	0.084	-0.003	0.211	undef	0.094
SUPT16H		1	1195	2197	2203	0.268	-0.028	0.155	0.113	-0.024
ENPP1		5	360	1055	1034	0.088	0.129	-0.026	undef	0.039
CLCA2		9	196	412	411	-0.176	0.243	-0.153	0.191	-0.000
TRAF3IP1		9	196	83	99	-0.113	-0.063	-0.088	0.276	undef
PAM		10	167	638	621	-0.035	0.307	0.200	0.002	0.104
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
RABGEF1		2	743	2197	2176	-0.006	0.198	0.137	0.089	0.218
SERPINE1		8	222	179	200	0.160	0.200	0.056	0.070	0.030
RUNX1		5	360	906	890	-0.161	0.140	0.016	0.102	0.025
SGOL1		2	743	1437	1433	0.279	-0.046	undef	undef	undef
NOLC1		4	440	1047	1032	0.033	-0.055	0.172	0.012	-0.064
EYA2		13	124	318	316	-0.034	0.113	-0.142	undef	-0.019
KHK		1	1195	2197	2203	0.073	-0.099	-0.004	undef	0.152
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
TRIM29		8	222	296	287	0.161	0.240	-0.150	-0.077	0.024
SDPR		1	1195	2197	2203	-0.150	-0.023	0.138	0.085	0.114
RASSF9		4	440	1102	1080	0.156	-0.058	0.173	0.122	-0.133
SRRM1		10	167	296	283	-0.120	0.139	0.244	0.294	-0.109
PTPN3		11	148	658	635	0.029	0.060	-0.067	0.225	-0.034
RSRC1		21	73	366	354	0.023	0.104	0.105	-0.098	0.212
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
HOXA10		4	440	1	59	0.046	0.203	-0.057	-0.160	0.016
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
HBA1		3	557	141	170	0.058	-0.042	0.140	0.142	0.131
APLP1		8	222	727	703	0.284	0.043	-0.105	-0.121	-0.190
SLC9A3R1		3	557	1735	1718	0.004	0.017	0.017	0.096	-0.110
PTEN		27	50	141	135	0.045	0.055	0.017	0.183	-0.041
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
JAK2		2	743	478	490	0.018	-0.177	-0.202	-0.145	-0.156
RDX		1	1195	2197	2203	-0.049	0.034	0.149	-0.068	-0.073
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
FGFR4		21	73	179	183	-0.011	0.188	-0.089	-0.018	-0.049
PNP		2	743	412	439	0.036	-0.012	0.108	-0.040	0.132
TAF1D		10	167	590	566	0.141	0.113	0.041	undef	0.059
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
RPL7		3	557	1437	1418	0.189	-0.121	0.166	0.071	-0.003
FANCA		9	196	1	44	0.120	-0.188	0.106	-0.127	-0.053
CDK5R1		17	95	552	521	-0.150	0.038	-0.096	0.121	0.091
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
MAPK3		6	301	141	152	0.137	-0.102	-0.126	undef	-0.086
COX17		2	743	2129	2103	0.249	-0.006	-0.094	0.024	0.125
TNFRSF1B		2	743	1938	1922	0.024	-0.187	-0.096	-0.228	-0.106
IRS1		9	196	842	805	-0.219	0.065	0.165	0.102	0.064
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
OPRK1		1	1195	2197	2203	0.011	0.035	0.034	-0.052	-0.098
IKBKE		10	167	552	539	0.227	-0.041	-0.095	-0.197	0.079
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
SLC25A19		1	1195	2197	2203	0.183	-0.194	undef	undef	undef
PGM2L1		3	557	412	430	-0.019	0.220	undef	undef	undef
HMGB2		2	743	2163	2145	0.214	-0.085	0.151	undef	-0.015
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
KRT18		8	222	590	569	0.148	0.100	-0.083	0.024	-0.053
CDH2		10	167	727	702	0.169	0.109	-0.016	0.123	0.155
SLC22A4		2	743	2197	2176	0.124	0.045	0.023	0.072	0.020
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6331 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.869E-14	2.167E-10
negative regulation of phosphorylation	GO:0042326		1.325E-10	1.619E-07
negative regulation of phosphorus metabolic process	GO:0010563		2.491E-10	2.029E-07
negative regulation of cell-matrix adhesion	GO:0001953		4.757E-09	2.905E-06
phospholipid dephosphorylation	GO:0046839		8.35E-09	4.08E-06
negative regulation of protein kinase B signaling cascade	GO:0051898		2.492E-08	1.015E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		5.786E-08	2.019E-05
negative regulation of focal adhesion formation	GO:0051895		5.786E-08	1.767E-05
endothelial cell migration	GO:0043542		6.173E-08	1.676E-05
cardiac muscle tissue development	GO:0048738		6.173E-08	1.508E-05
phosphoinositide 3-kinase cascade	GO:0014065		1.151E-07	2.557E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.137E-13	5.142E-10
negative regulation of phosphorylation	GO:0042326		2.346E-10	2.822E-07
negative regulation of phosphorus metabolic process	GO:0010563		4.405E-10	3.533E-07
negative regulation of cell-matrix adhesion	GO:0001953		7.186E-09	4.323E-06
phospholipid dephosphorylation	GO:0046839		1.164E-08	5.603E-06
negative regulation of protein kinase B signaling cascade	GO:0051898		3.474E-08	1.393E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		8.062E-08	2.771E-05
negative regulation of focal adhesion formation	GO:0051895		8.062E-08	2.425E-05
endothelial cell migration	GO:0043542		9.301E-08	2.487E-05
cardiac muscle tissue development	GO:0048738		9.301E-08	2.238E-05
phosphoinositide 3-kinase cascade	GO:0014065		1.604E-07	3.507E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.254E-11	7.484E-08
negative regulation of phosphorylation	GO:0042326		1.115E-09	1.282E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.152E-09	1.65E-06
negative regulation of insulin receptor signaling pathway	GO:0046627		2.434E-07	1.399E-04
insulin-like growth factor receptor signaling pathway	GO:0048009		4.832E-07	2.223E-04
phosphoinositide 3-kinase cascade	GO:0014065		4.832E-07	1.852E-04
cellular response to insulin stimulus	GO:0032869		6.261E-07	2.057E-04
regulation of insulin receptor signaling pathway	GO:0046626		8.635E-07	2.483E-04
negative regulation of cell-matrix adhesion	GO:0001953		1.429E-06	3.651E-04
negative regulation of cell size	GO:0045792		2.055E-06	4.725E-04
negative regulation of glucose import	GO:0046325		2.229E-06	4.661E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
ER overload response	GO:0006983		1.238E-05	0.02281858
phosphoinositide 3-kinase cascade	GO:0014065		1.238E-05	0.01140929
oxygen transport	GO:0015671		2.153E-05	0.01322817
regulation of cell migration	GO:0030334		3.145E-05	0.01449223
negative regulation of blood coagulation	GO:0030195		3.424E-05	0.0126202
Wnt receptor signaling pathway	GO:0016055		3.982E-05	0.01223225
gas transport	GO:0015669		5.104E-05	0.01343771
regulation of locomotion	GO:0040012		5.784E-05	0.01332459
regulation of cell motion	GO:0051270		5.784E-05	0.01184408
negative regulation of coagulation	GO:0050819		7.246E-05	0.01335433
protein amino acid autophosphorylation	GO:0046777		9.153E-05	0.01533478

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.254E-11	7.484E-08
negative regulation of phosphorylation	GO:0042326		1.115E-09	1.282E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.152E-09	1.65E-06
negative regulation of insulin receptor signaling pathway	GO:0046627		2.434E-07	1.399E-04
insulin-like growth factor receptor signaling pathway	GO:0048009		4.832E-07	2.223E-04
phosphoinositide 3-kinase cascade	GO:0014065		4.832E-07	1.852E-04
cellular response to insulin stimulus	GO:0032869		6.261E-07	2.057E-04
regulation of insulin receptor signaling pathway	GO:0046626		8.635E-07	2.483E-04
negative regulation of cell-matrix adhesion	GO:0001953		1.429E-06	3.651E-04
negative regulation of cell size	GO:0045792		2.055E-06	4.725E-04
negative regulation of glucose import	GO:0046325		2.229E-06	4.661E-04