Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6313

score

Expression data for subnetwork 6313 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6313 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
MAPK8		8	222	696	677	0.153	0.200	0.249	-0.066	0.138
HACL1		4	440	590	585	0.028	-0.071	undef	-0.278	undef
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
ADD1		8	222	366	373	-0.085	0.116	0.035	undef	-0.098
MFAP5		1	1195	2215	2217	0.195	0.036	0.040	0.071	0.142
NDC80		2	743	525	547	0.246	-0.229	0.060	-0.005	0.044
RIPK1		1	1195	2215	2217	0.249	0.088	-0.021	0.020	-0.035
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
MPP5		1	1195	2215	2217	0.022	0.005	-0.090	undef	0.044
HLTF		2	743	1644	1630	0.145	0.070	0.114	0.209	-0.006
EEF1G		8	222	882	869	0.116	-0.224	0.131	0.086	0.082
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
PDGFRA		10	167	141	146	-0.035	0.008	0.118	0.107	0.119
POLD1		1	1195	2215	2217	0.203	-0.129	-0.006	-0.111	-0.167
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
DLG5		1	1195	2215	2217	0.180	0.106	0.195	0.138	0.009
MAP3K2		2	743	2215	2193	0.115	0.087	-0.066	-0.070	-0.117
PIN1		24	62	179	181	0.194	0.040	-0.040	0.065	-0.048
PIK3R2		4	440	141	165	-0.047	0.015	-0.147	undef	-0.135
LIN7A		6	301	366	377	-0.189	-0.074	0.108	0.065	-0.146
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
TGFBRAP1		2	743	2003	1980	-0.051	0.018	-0.088	-0.094	-0.105
MEGF6		1	1195	2215	2217	0.110	0.197	0.067	-0.045	0.083
TAT		11	148	83	97	-0.113	0.030	-0.182	0.037	-0.074
LAMA4		13	124	696	670	-0.016	0.138	0.209	0.172	0.343
MAP3K3		4	440	1364	1330	0.085	0.046	0.028	-0.035	0.094
ATF3		17	95	179	189	0.225	-0.021	0.000	undef	-0.039
AURKB		4	440	83	112	0.179	-0.189	0.086	-0.058	-0.028
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
HSPA1L		1	1195	2215	2217	0.097	-0.104	0.033	0.077	0.095
KIF1A		2	743	141	197	-0.089	-0.067	0.178	0.007	-0.047
LPL		13	124	236	230	-0.102	-0.062	0.292	0.087	-0.105
COPS6		16	104	1	31	0.147	-0.068	0.128	0.216	0.065
ABCA1		1	1195	2215	2217	-0.093	0.037	0.070	-0.001	0.043
LZTS1		3	557	2147	2108	-0.008	-0.089	0.043	0.147	0.063
PTN		24	62	236	225	undef	0.022	0.000	0.054	-0.092
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
JDP2		4	440	2053	2008	0.062	0.045	undef	undef	undef
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
TGFBR1		4	440	1793	1755	-0.004	0.036	-0.078	0.181	undef
KIAA1377		18	86	141	136	-0.095	0.116	undef	0.198	undef
FOXG1		6	301	727	716	0.136	-0.156	-0.126	-0.013	-0.068
C20orf20		2	743	906	911	0.221	-0.160	0.161	0.018	0.024
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
RPL23		2	743	2215	2193	0.024	-0.022	0.164	0.086	-0.032
PDZK1		1	1195	2215	2217	-0.150	0.145	0.209	-0.184	-0.051
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
FHL2		21	73	658	630	0.143	0.239	-0.033	0.107	0.294
ARHGEF12		2	743	1316	1312	-0.190	0.167	-0.018	0.206	0.126
POLD3		2	743	1077	1077	0.053	-0.072	0.193	0.089	0.042
LIN7C		10	167	590	566	0.166	0.088	0.118	-0.018	0.094
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
PML		6	301	478	473	-0.068	-0.010	-0.007	-0.153	-0.070
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
FHL1		14	117	614	591	-0.041	0.104	0.301	undef	0.266
HIPK3		9	196	1461	1417	0.069	0.005	-0.027	undef	0.175
SLC22A4		2	743	2197	2176	0.124	0.045	0.023	0.072	0.020
SFN		25	59	478	454	0.141	0.270	0.023	-0.102	0.101
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
CSF1R		1	1195	2215	2217	-0.019	-0.073	-0.072	-0.081	-0.047

GO Enrichment output for subnetwork 6313 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein kinase activity	GO:0006469		1.382E-06	3.376E-03
negative regulation of kinase activity	GO:0033673		1.505E-06	1.839E-03
negative regulation of transferase activity	GO:0051348		2.092E-06	1.703E-03
apoptotic mitochondrial changes	GO:0008637		2.829E-06	1.728E-03
activation of pro-apoptotic gene products	GO:0008633		5.11E-06	2.497E-03
negative regulation of phosphorylation	GO:0042326		6.108E-06	2.487E-03
regulation of T cell differentiation in the thymus	GO:0033081		6.904E-06	2.409E-03
negative regulation of phosphorus metabolic process	GO:0010563		8.526E-06	2.604E-03
DNA synthesis during DNA repair	GO:0000731		1.032E-05	2.801E-03
protein amino acid autophosphorylation	GO:0046777		1.836E-05	4.485E-03
negative regulation of cell growth	GO:0030308		2.297E-05	5.102E-03

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein kinase activity	GO:0006469		1.68E-06	4.041E-03
negative regulation of kinase activity	GO:0033673		1.834E-06	2.206E-03
negative regulation of transferase activity	GO:0051348		2.572E-06	2.063E-03
apoptotic mitochondrial changes	GO:0008637		3.654E-06	2.198E-03
activation of pro-apoptotic gene products	GO:0008633		6.595E-06	3.174E-03
negative regulation of phosphorylation	GO:0042326		7.881E-06	3.16E-03
regulation of T cell differentiation in the thymus	GO:0033081		8.388E-06	2.883E-03
negative regulation of phosphorus metabolic process	GO:0010563		1.1E-05	3.307E-03
DNA synthesis during DNA repair	GO:0000731		1.253E-05	3.35E-03
cell cycle arrest	GO:0007050		1.734E-05	4.171E-03
protein amino acid autophosphorylation	GO:0046777		1.82E-05	3.982E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein kinase activity	GO:0006469		3.044E-06	7.002E-03
negative regulation of kinase activity	GO:0033673		3.376E-06	3.882E-03
negative regulation of transferase activity	GO:0051348		4.551E-06	3.489E-03
apoptotic mitochondrial changes	GO:0008637		6.832E-06	3.928E-03
activation of pro-apoptotic gene products	GO:0008633		1.314E-05	6.046E-03
protein amino acid autophosphorylation	GO:0046777		1.612E-05	6.179E-03
DNA synthesis during DNA repair	GO:0000731		1.901E-05	6.245E-03
regulation of T cell differentiation in the thymus	GO:0033081		1.901E-05	5.464E-03
negative regulation of phosphorylation	GO:0042326		1.923E-05	4.915E-03
negative regulation of phosphorus metabolic process	GO:0010563		2.718E-05	6.251E-03
cell cycle arrest	GO:0007050		3.336E-05	6.975E-03

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
DNA synthesis during DNA repair	GO:0000731		3.157E-06	5.818E-03
regulation of cell growth	GO:0001558		3.813E-06	3.514E-03
regulation of cell size	GO:0008361		6.598E-06	4.054E-03
negative regulation of cell growth	GO:0030308		6.499E-05	0.02994261
negative regulation of cell size	GO:0045792		7.357E-05	0.02711894
nucleotide-excision repair. DNA gap filling	GO:0006297		8.68E-05	0.0266634
negative regulation of protein kinase activity	GO:0006469		1.163E-04	0.03063091
negative regulation of growth	GO:0045926		1.163E-04	0.02680205
negative regulation of kinase activity	GO:0033673		1.294E-04	0.026491
negative regulation of transferase activity	GO:0051348		1.585E-04	0.02921812
triglyceride metabolic process	GO:0006641		1.675E-04	0.02806089

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein kinase activity	GO:0006469		3.044E-06	7.002E-03
negative regulation of kinase activity	GO:0033673		3.376E-06	3.882E-03
negative regulation of transferase activity	GO:0051348		4.551E-06	3.489E-03
apoptotic mitochondrial changes	GO:0008637		6.832E-06	3.928E-03
activation of pro-apoptotic gene products	GO:0008633		1.314E-05	6.046E-03
protein amino acid autophosphorylation	GO:0046777		1.612E-05	6.179E-03
DNA synthesis during DNA repair	GO:0000731		1.901E-05	6.245E-03
regulation of T cell differentiation in the thymus	GO:0033081		1.901E-05	5.464E-03
negative regulation of phosphorylation	GO:0042326		1.923E-05	4.915E-03
negative regulation of phosphorus metabolic process	GO:0010563		2.718E-05	6.251E-03
cell cycle arrest	GO:0007050		3.336E-05	6.975E-03