Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6287
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7585 | 3.232e-03 | 5.140e-04 | 7.582e-01 | 1.260e-06 |
|---|
| Loi | 0.2291 | 8.222e-02 | 1.188e-02 | 4.329e-01 | 4.229e-04 |
|---|
| Schmidt | 0.6714 | 0.000e+00 | 0.000e+00 | 4.709e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7906 | 0.000e+00 | 0.000e+00 | 3.491e-03 | 0.000e+00 |
|---|
| Wang | 0.2599 | 2.919e-03 | 4.598e-02 | 4.063e-01 | 5.452e-05 |
|---|
Expression data for subnetwork 6287 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6287 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| CASP3 |   | 11 | 148 | 141 | 143 | 0.234 | -0.032 | -0.142 | -0.097 | -0.084 |
|---|
| LDLR | | 5 | 360 | 780 | 767 | -0.041 | 0.218 | 0.039 | -0.028 | 0.064 |
|---|
| MAGED1 | | 5 | 360 | 842 | 828 | -0.141 | 0.284 | -0.152 | 0.240 | 0.045 |
|---|
| ANK3 | | 6 | 301 | 83 | 105 | 0.153 | 0.034 | 0.001 | 0.094 | -0.038 |
|---|
| HSPB7 | | 1 | 1195 | 2103 | 2109 | -0.020 | -0.016 | 0.151 | 0.139 | 0.150 |
|---|
| CDKN1A | | 110 | 5 | 1 | 5 | 0.064 | 0.254 | 0.030 | undef | 0.082 |
|---|
| PRKCA | | 63 | 15 | 1 | 10 | -0.016 | -0.088 | 0.174 | 0.095 | 0.005 |
|---|
| GRM5 | | 15 | 111 | 179 | 191 | 0.094 | -0.019 | 0.000 | 0.093 | -0.093 |
|---|
| CDKN2C | | 16 | 104 | 236 | 227 | 0.216 | -0.106 | 0.202 | -0.024 | -0.081 |
|---|
| CCND1 | | 26 | 52 | 1 | 24 | -0.258 | 0.074 | 0.117 | undef | 0.003 |
|---|
| PCNA | | 15 | 111 | 1 | 32 | 0.243 | -0.158 | 0.027 | -0.099 | 0.003 |
|---|
| PPP2R2B | | 39 | 29 | 179 | 173 | 0.124 | -0.019 | 0.029 | 0.116 | -0.073 |
|---|
| KIT | | 39 | 29 | 1 | 18 | -0.130 | -0.091 | 0.235 | -0.046 | -0.059 |
|---|
| NAT2 | | 1 | 1195 | 2103 | 2109 | -0.175 | 0.082 | -0.191 | 0.163 | 0.055 |
|---|
| PDGFRB | | 12 | 140 | 141 | 142 | -0.094 | 0.224 | 0.127 | 0.153 | 0.189 |
|---|
| MX1 | | 1 | 1195 | 2103 | 2109 | 0.092 | -0.016 | -0.165 | 0.012 | -0.267 |
|---|
| SMAD9 | | 9 | 196 | 296 | 285 | -0.090 | -0.153 | 0.055 | 0.081 | -0.059 |
|---|
| E2F3 | | 2 | 743 | 806 | 806 | 0.041 | -0.091 | 0.177 | -0.082 | 0.050 |
|---|
| ATG12 | | 1 | 1195 | 2103 | 2109 | 0.123 | 0.248 | 0.077 | 0.056 | 0.081 |
|---|
| FLNA | | 50 | 20 | 1 | 14 | 0.081 | 0.107 | 0.148 | 0.268 | 0.126 |
|---|
| ZNF232 | | 3 | 557 | 882 | 871 | 0.048 | -0.040 | 0.189 | -0.007 | 0.159 |
|---|
| HSPB8 | | 2 | 743 | 658 | 674 | -0.077 | 0.020 | 0.134 | 0.021 | 0.178 |
|---|
| DSG1 | | 10 | 167 | 658 | 636 | 0.072 | -0.075 | 0.252 | -0.061 | 0.068 |
|---|
| E2F2 | | 13 | 124 | 1 | 35 | 0.212 | -0.047 | 0.162 | -0.131 | -0.092 |
|---|
| HSPB1 | | 22 | 69 | 1 | 25 | 0.053 | 0.169 | 0.017 | 0.179 | 0.161 |
|---|
| CCDC59 | | 2 | 743 | 842 | 854 | 0.102 | -0.117 | 0.124 | -0.093 | 0.007 |
|---|
| TGFB1I1 | | 49 | 22 | 1 | 16 | -0.105 | 0.229 | 0.143 | 0.195 | 0.298 |
|---|
| TUBB | | 5 | 360 | 614 | 612 | -0.118 | 0.170 | 0.200 | undef | -0.045 |
|---|
| SMNDC1 | | 3 | 557 | 1083 | 1073 | 0.199 | 0.079 | 0.288 | 0.002 | 0.174 |
|---|
| MPZL1 | | 2 | 743 | 1867 | 1849 | -0.311 | 0.226 | -0.168 | 0.081 | -0.005 |
|---|
| BMPR2 | | 5 | 360 | 1323 | 1292 | -0.132 | 0.081 | -0.029 | 0.356 | -0.021 |
|---|
| GRB14 | | 24 | 62 | 179 | 181 | 0.113 | -0.129 | 0.143 | -0.098 | 0.138 |
|---|
| ARHGEF7 | | 25 | 59 | 83 | 92 | -0.074 | -0.061 | 0.208 | 0.028 | 0.015 |
|---|
| PDCD7 | | 1 | 1195 | 2103 | 2109 | 0.180 | 0.182 | undef | undef | undef |
|---|
| GSTP1 | | 14 | 117 | 1 | 34 | 0.222 | -0.166 | 0.201 | 0.126 | -0.136 |
|---|
| HSPB3 | | 1 | 1195 | 2103 | 2109 | undef | -0.089 | 0.155 | 0.058 | 0.153 |
|---|
| BMP2 | | 11 | 148 | 525 | 505 | -0.011 | 0.097 | 0.148 | -0.114 | -0.069 |
|---|
| RB1 | | 31 | 43 | 1 | 22 | 0.013 | -0.051 | 0.057 | 0.100 | -0.082 |
|---|
| UNC119 | | 10 | 167 | 83 | 98 | -0.009 | -0.324 | -0.099 | 0.094 | 0.071 |
|---|
| SMC3 | | 5 | 360 | 614 | 612 | 0.105 | -0.096 | 0.238 | 0.137 | 0.047 |
|---|
| PTEN | | 27 | 50 | 141 | 135 | 0.045 | 0.055 | 0.017 | 0.183 | -0.041 |
|---|
| TBCD | | 1 | 1195 | 2103 | 2109 | -0.107 | -0.162 | 0.038 | -0.105 | -0.028 |
|---|
| PAK2 | | 26 | 52 | 179 | 177 | 0.014 | 0.161 | 0.081 | -0.044 | 0.062 |
|---|
| SREBF1 | | 9 | 196 | 478 | 460 | -0.042 | 0.232 | -0.195 | 0.140 | -0.074 |
|---|
| PTPN11 | | 20 | 81 | 83 | 94 | -0.152 | 0.014 | 0.066 | 0.304 | 0.089 |
|---|
| CD9 | | 13 | 124 | 525 | 503 | 0.036 | -0.115 | -0.109 | 0.281 | -0.147 |
|---|
| SP1 | | 72 | 10 | 83 | 77 | 0.222 | -0.254 | 0.239 | 0.020 | 0.082 |
|---|
| CHGB | | 7 | 256 | 682 | 664 | -0.126 | -0.041 | 0.018 | 0.102 | -0.131 |
|---|
| GREM1 | | 9 | 196 | 525 | 508 | -0.073 | 0.200 | 0.028 | 0.225 | 0.261 |
|---|
| STAG1 | | 3 | 557 | 991 | 982 | -0.035 | 0.153 | 0.310 | 0.048 | 0.208 |
|---|
| ZC4H2 | | 17 | 95 | 570 | 546 | 0.065 | 0.061 | 0.304 | -0.072 | 0.059 |
|---|
| PIK3R1 | | 127 | 2 | 1 | 2 | -0.237 | 0.381 | 0.065 | undef | -0.002 |
|---|
| FHL2 | | 21 | 73 | 658 | 630 | 0.143 | 0.239 | -0.033 | 0.107 | 0.294 |
|---|
| SKP2 | | 29 | 45 | 1 | 23 | 0.092 | -0.043 | 0.237 | undef | -0.009 |
|---|
| HMGCS2 | | 2 | 743 | 1825 | 1808 | -0.277 | 0.226 | -0.194 | 0.151 | -0.085 |
|---|
| ITGA5 | | 26 | 52 | 179 | 177 | 0.031 | 0.192 | 0.125 | 0.133 | 0.202 |
|---|
| PTPN12 | | 6 | 301 | 478 | 473 | -0.159 | 0.153 | 0.031 | 0.083 | 0.042 |
|---|
| EGFR | | 117 | 3 | 1 | 3 | -0.195 | 0.240 | -0.205 | -0.187 | 0.065 |
|---|
| MAPKAPK2 | | 3 | 557 | 1681 | 1657 | 0.149 | 0.107 | 0.141 | 0.096 | 0.009 |
|---|
| ID3 | | 9 | 196 | 658 | 637 | 0.072 | -0.006 | 0.192 | -0.023 | 0.057 |
|---|
| FGFR2 | | 7 | 256 | 179 | 201 | -0.024 | -0.001 | 0.129 | undef | 0.009 |
|---|
| IGFBP5 | | 48 | 23 | 83 | 80 | -0.076 | 0.110 | 0.074 | 0.278 | 0.181 |
|---|
| GRB7 | | 58 | 18 | 1 | 12 | 0.021 | 0.115 | -0.072 | 0.229 | 0.129 |
|---|
| AR | | 46 | 24 | 141 | 133 | -0.163 | 0.081 | -0.035 | 0.178 | -0.030 |
|---|
| OTUD4 | | 1 | 1195 | 2103 | 2109 | -0.204 | -0.012 | 0.227 | -0.037 | -0.092 |
|---|
| FHL1 | | 14 | 117 | 614 | 591 | -0.041 | 0.104 | 0.301 | undef | 0.266 |
|---|
| ITGB4 | | 35 | 34 | 1 | 20 | 0.021 | 0.313 | -0.134 | 0.080 | -0.114 |
|---|
| CDK2 | | 31 | 43 | 179 | 174 | 0.196 | -0.096 | 0.109 | 0.001 | 0.362 |
|---|
| CDH2 | | 10 | 167 | 727 | 702 | 0.169 | 0.109 | -0.016 | 0.123 | 0.155 |
|---|
| CDKN2A | | 60 | 17 | 1 | 11 | 0.263 | -0.113 | 0.111 | undef | -0.105 |
|---|
| FHL5 | | 3 | 557 | 658 | 654 | 0.022 | 0.031 | 0.145 | -0.095 | 0.153 |
|---|
GO Enrichment output for subnetwork 6287 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.778E-13 | 9.229E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.761E-11 | 1.192E-07 |
|---|
| negative regulation of cell-matrix adhesion | GO:0001953 | | 1.586E-09 | 1.291E-06 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 2.209E-09 | 1.349E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.323E-09 | 1.135E-06 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.827E-09 | 1.151E-06 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 3.177E-09 | 1.109E-06 |
|---|
| phospholipid dephosphorylation | GO:0046839 | | 3.461E-09 | 1.057E-06 |
|---|
| spindle assembly | GO:0051225 | | 3.461E-09 | 9.395E-07 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 3.746E-09 | 9.151E-07 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 4.984E-09 | 1.107E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.16E-13 | 2.204E-09 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.989E-10 | 2.393E-07 |
|---|
| negative regulation of cell-matrix adhesion | GO:0001953 | | 2.501E-09 | 2.006E-06 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 3.794E-09 | 2.282E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.838E-09 | 1.847E-06 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.494E-09 | 1.802E-06 |
|---|
| phospholipid dephosphorylation | GO:0046839 | | 4.995E-09 | 1.717E-06 |
|---|
| spindle assembly | GO:0051225 | | 4.995E-09 | 1.502E-06 |
|---|
| interphase | GO:0051325 | | 5.066E-09 | 1.354E-06 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 5.069E-09 | 1.22E-06 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 6.428E-09 | 1.406E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.968E-10 | 4.527E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.333E-09 | 1.532E-06 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.385E-08 | 1.062E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.596E-08 | 9.177E-06 |
|---|
| negative regulation of peptide secretion | GO:0002792 | | 1.794E-08 | 8.252E-06 |
|---|
| spindle assembly | GO:0051225 | | 1.794E-08 | 6.877E-06 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.877E-08 | 6.168E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.361E-08 | 6.787E-06 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.404E-08 | 6.144E-06 |
|---|
| interphase | GO:0051325 | | 2.895E-08 | 6.658E-06 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 3.251E-08 | 6.798E-06 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.551E-06 | 8.388E-03 |
|---|
| cell junction assembly | GO:0034329 | | 5.481E-06 | 5.05E-03 |
|---|
| steroid hormone receptor signaling pathway | GO:0030518 | | 6.922E-06 | 4.253E-03 |
|---|
| intracellular receptor-mediated signaling pathway | GO:0030522 | | 8.976E-06 | 4.136E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.349E-05 | 4.972E-03 |
|---|
| cell junction organization | GO:0034330 | | 1.64E-05 | 5.037E-03 |
|---|
| cell-cell junction assembly | GO:0007043 | | 1.972E-05 | 5.191E-03 |
|---|
| androgen receptor signaling pathway | GO:0030521 | | 2.357E-05 | 5.43E-03 |
|---|
| platelet-derived growth factor receptor signaling pathway | GO:0048008 | | 2.943E-05 | 6.026E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.018E-05 | 5.562E-03 |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 4.445E-05 | 7.448E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.968E-10 | 4.527E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.333E-09 | 1.532E-06 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.385E-08 | 1.062E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.596E-08 | 9.177E-06 |
|---|
| negative regulation of peptide secretion | GO:0002792 | | 1.794E-08 | 8.252E-06 |
|---|
| spindle assembly | GO:0051225 | | 1.794E-08 | 6.877E-06 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.877E-08 | 6.168E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.361E-08 | 6.787E-06 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.404E-08 | 6.144E-06 |
|---|
| interphase | GO:0051325 | | 2.895E-08 | 6.658E-06 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 3.251E-08 | 6.798E-06 |
|---|
