Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2580-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2476 | 1.092e-02 | 8.276e-03 | 9.350e-02 |
|---|
| IPC-NIBC-129 | 0.2459 | 3.151e-02 | 4.623e-02 | 3.266e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2456 | 1.197e-02 | 1.961e-02 | 3.004e-01 |
|---|
| Loi_GPL570 | 0.3280 | 1.904e-02 | 2.220e-02 | 9.734e-02 |
|---|
| Loi_GPL96-GPL97 | 0.1534 | 4.000e-06 | 3.900e-05 | 1.300e-05 |
|---|
| Parker_GPL1390 | 0.2315 | 7.953e-02 | 9.660e-02 | 5.021e-01 |
|---|
| Parker_GPL887 | 0.1052 | 2.674e-01 | 2.848e-01 | 2.783e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3628 | 5.172e-01 | 4.450e-01 | 9.708e-01 |
|---|
| Schmidt | 0.2104 | 1.932e-01 | 2.442e-01 | 7.844e-01 |
|---|
| Sotiriou | 0.2960 | 1.587e-02 | 1.231e-02 | 2.441e-01 |
|---|
| Van-De-Vijver | 0.2905 | 1.590e-03 | 2.287e-03 | 7.975e-02 |
|---|
| Zhang | 0.1288 | 1.482e-01 | 9.970e-02 | 3.045e-01 |
|---|
| Zhou | 0.3944 | 6.478e-02 | 5.306e-02 | 3.842e-01 |
|---|
Expression data for subnetwork 2580-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2580-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| calm1 |   | 2 | 78 | 211 | 207 | 0.038 | 0.023 | 0.171 | 0.277 | 0.113 | 0.034 | -0.199 | 0.007 | 0.171 | 0.112 | 0.101 | 0.162 | 0.171 |
|---|
| ccnb2 | | 12 | 18 | 84 | 62 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.279 | 0.211 | 0.463 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tpx2 | | 2 | 78 | 211 | 207 | 0.125 | 0.234 | 0.143 | 0.235 | 0.185 | 0.062 | 0.375 | 0.317 | 0.210 | 0.209 | undef | 0.103 | 0.411 |
|---|
| hmmr | | 2 | 78 | 211 | 207 | 0.112 | 0.310 | 0.147 | 0.127 | 0.145 | 0.134 | 0.131 | 0.221 | 0.179 | 0.233 | 0.072 | 0.144 | 0.325 |
|---|
| ap2m1 | | 2 | 78 | 211 | 207 | 0.089 | 0.224 | 0.153 | 0.180 | 0.060 | 0.191 | -0.033 | 0.015 | 0.103 | 0.050 | undef | -0.044 | 0.255 |
|---|
| gak | | 2 | 78 | 211 | 207 | 0.120 | -0.018 | 0.068 | 0.106 | 0.092 | 0.098 | -0.067 | 0.059 | -0.069 | 0.056 | 0.030 | 0.016 | 0.236 |
|---|
| hsp90aa1 | | 5 | 40 | 106 | 90 | 0.116 | 0.030 | 0.164 | 0.076 | 0.119 | 0.155 | -0.199 | 0.169 | 0.069 | 0.102 | undef | -0.011 | 0.399 |
|---|
| ndrg1 | | 4 | 50 | 184 | 168 | 0.072 | 0.301 | 0.084 | 0.324 | 0.108 | 0.102 | 0.240 | 0.083 | 0.068 | 0.064 | 0.223 | 0.092 | -0.255 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
GO Enrichment output for subnetwork 2580-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.535E-05 | 0.03529879 |
|---|
| protein refolding | GO:0042026 | | 1.86E-05 | 0.02139057 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 0.0144414 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 0.0148047 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 0.0119705 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.602E-05 | 9.975E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.602E-05 | 8.55E-03 |
|---|
| mast cell activation | GO:0045576 | | 2.602E-05 | 7.482E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 8.861E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.467E-05 | 7.975E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 3.467E-05 | 7.25E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 0.01261808 |
|---|
| protein refolding | GO:0042026 | | 7.704E-06 | 9.41E-03 |
|---|
| response to UV | GO:0009411 | | 8.888E-06 | 7.237E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.903E-06 | 6.048E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.437E-05 | 7.02E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.437E-05 | 5.85E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.437E-05 | 5.014E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.437E-05 | 4.387E-03 |
|---|
| mast cell activation | GO:0045576 | | 1.437E-05 | 3.9E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.307E-05 | 5.636E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 2.307E-05 | 5.124E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 0.01390729 |
|---|
| protein refolding | GO:0042026 | | 8.353E-06 | 0.01004826 |
|---|
| response to UV | GO:0009411 | | 8.889E-06 | 7.129E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.108E-05 | 6.665E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 7.496E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.558E-05 | 6.246E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.558E-05 | 5.354E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.558E-05 | 4.685E-03 |
|---|
| mast cell activation | GO:0045576 | | 1.558E-05 | 4.164E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.501E-05 | 6.018E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 2.501E-05 | 5.471E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 0.01261808 |
|---|
| protein refolding | GO:0042026 | | 7.704E-06 | 9.41E-03 |
|---|
| response to UV | GO:0009411 | | 8.888E-06 | 7.237E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.903E-06 | 6.048E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.437E-05 | 7.02E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.437E-05 | 5.85E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.437E-05 | 5.014E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.437E-05 | 4.387E-03 |
|---|
| mast cell activation | GO:0045576 | | 1.437E-05 | 3.9E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.307E-05 | 5.636E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 2.307E-05 | 5.124E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 0.01390729 |
|---|
| protein refolding | GO:0042026 | | 8.353E-06 | 0.01004826 |
|---|
| response to UV | GO:0009411 | | 8.889E-06 | 7.129E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.108E-05 | 6.665E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 7.496E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.558E-05 | 6.246E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.558E-05 | 5.354E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.558E-05 | 4.685E-03 |
|---|
| mast cell activation | GO:0045576 | | 1.558E-05 | 4.164E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.501E-05 | 6.018E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 2.501E-05 | 5.471E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 4.494E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 6.614E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 4.006E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 3.643E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 4.142E-06 | 2.958E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 4.142E-06 | 2.465E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.339E-06 | 2.214E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 2.772E-03 |
|---|
| mast cell activation | GO:0045576 | | 6.21E-06 | 2.464E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.178E-06 | 3.278E-03 |
|---|
| response to metal ion | GO:0010038 | | 9.619E-06 | 3.123E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 6.139E-09 | 2.239E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.983E-08 | 7.266E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.34E-06 | 1.629E-03 |
|---|
| response to UV | GO:0009411 | | 1.539E-06 | 1.404E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.255E-06 | 1.646E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 2.566E-06 | 1.56E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 2.566E-06 | 1.337E-03 |
|---|
| response to metal ion | GO:0010038 | | 3.697E-06 | 1.686E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.848E-06 | 1.56E-03 |
|---|
| mast cell activation | GO:0045576 | | 3.848E-06 | 1.404E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 4.496E-06 | 1.491E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 0.01390729 |
|---|
| protein refolding | GO:0042026 | | 8.353E-06 | 0.01004826 |
|---|
| response to UV | GO:0009411 | | 8.889E-06 | 7.129E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.108E-05 | 6.665E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 7.496E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.558E-05 | 6.246E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.558E-05 | 5.354E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.558E-05 | 4.685E-03 |
|---|
| mast cell activation | GO:0045576 | | 1.558E-05 | 4.164E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.501E-05 | 6.018E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 2.501E-05 | 5.471E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 0.03529879 |
|---|
| protein refolding | GO:0042026 | | 1.86E-05 | 0.02139057 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 0.0144414 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 0.0148047 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 0.0119705 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.602E-05 | 9.975E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.602E-05 | 8.55E-03 |
|---|
| mast cell activation | GO:0045576 | | 2.602E-05 | 7.482E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 8.861E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.467E-05 | 7.975E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 3.467E-05 | 7.25E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 0.03529879 |
|---|
| protein refolding | GO:0042026 | | 1.86E-05 | 0.02139057 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 0.0144414 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 0.0148047 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 0.0119705 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.602E-05 | 9.975E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.602E-05 | 8.55E-03 |
|---|
| mast cell activation | GO:0045576 | | 2.602E-05 | 7.482E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 8.861E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.467E-05 | 7.975E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 3.467E-05 | 7.25E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| thymus development | GO:0048538 | | 6.331E-06 | 0.01166884 |
|---|
| T cell homeostasis | GO:0043029 | | 1.181E-05 | 0.01088458 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.897E-05 | 0.01165527 |
|---|
| leukocyte homeostasis | GO:0001776 | | 4.42E-05 | 0.02036705 |
|---|
| myeloid leukocyte activation | GO:0002274 | | 5.722E-05 | 0.02109186 |
|---|
| response to metal ion | GO:0010038 | | 2.349E-04 | 0.07214511 |
|---|
| response to inorganic substance | GO:0010035 | | 2.636E-04 | 0.06940402 |
|---|
| homeostasis of number of cells | GO:0048872 | | 3.771E-04 | 0.08686671 |
|---|
| in utero embryonic development | GO:0001701 | | 6.179E-04 | 0.12653736 |
|---|
| growth | GO:0040007 | | 1.001E-03 | 0.184395 |
|---|
| rRNA transcription | GO:0009303 | | 3.629E-03 | 0.60810571 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 0.03529879 |
|---|
| protein refolding | GO:0042026 | | 1.86E-05 | 0.02139057 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 0.0144414 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 0.0148047 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 0.0119705 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.602E-05 | 9.975E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.602E-05 | 8.55E-03 |
|---|
| mast cell activation | GO:0045576 | | 2.602E-05 | 7.482E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 8.861E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.467E-05 | 7.975E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| protein refolding | GO:0042026 | | 2.025E-08 | 4.805E-05 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 3.541E-08 | 4.202E-05 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 5.663E-08 | 4.479E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 1.143E-06 | 6.783E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.379E-06 | 6.544E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.759E-06 | 6.958E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 2.024E-06 | 6.863E-04 |
|---|
| mitochondrial membrane organization | GO:0007006 | | 2.299E-06 | 6.819E-04 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.06E-05 | 2.795E-03 |
|---|
| galactolipid metabolic process | GO:0019374 | | 1.06E-05 | 2.515E-03 |
|---|
| mitochondrial transport | GO:0006839 | | 1.219E-05 | 2.629E-03 |
|---|
