Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 11143-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1994 | 1.639e-02 | 1.311e-02 | 1.283e-01 |
|---|
| IPC-NIBC-129 | 0.2568 | 4.349e-02 | 6.297e-02 | 4.070e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2258 | 1.315e-02 | 2.137e-02 | 3.158e-01 |
|---|
| Loi_GPL570 | 0.2578 | 5.242e-02 | 5.957e-02 | 2.268e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1546 | 2.000e-06 | 2.000e-05 | 3.000e-06 |
|---|
| Parker_GPL1390 | 0.2271 | 6.248e-02 | 7.680e-02 | 4.439e-01 |
|---|
| Parker_GPL887 | 0.0511 | 3.610e-01 | 3.798e-01 | 3.937e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3414 | 7.954e-01 | 7.521e-01 | 9.986e-01 |
|---|
| Schmidt | 0.2274 | 2.800e-02 | 3.310e-02 | 2.921e-01 |
|---|
| Sotiriou | 0.3353 | 8.250e-03 | 6.275e-03 | 1.686e-01 |
|---|
| Van-De-Vijver | 0.2671 | 1.022e-03 | 1.471e-03 | 5.955e-02 |
|---|
| Zhang | 0.2502 | 1.456e-01 | 9.753e-02 | 3.002e-01 |
|---|
| Zhou | 0.4191 | 7.874e-02 | 6.833e-02 | 4.422e-01 |
|---|
Expression data for subnetwork 11143-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 11143-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| hdac1 |   | 2 | 78 | 232 | 224 | -0.076 | 0.003 | -0.041 | 0.108 | 0.111 | 0.128 | 0.164 | -0.034 | -0.074 | 0.152 | 0.018 | 0.086 | 0.292 |
|---|
| pcna | | 15 | 11 | 110 | 85 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.201 | 0.123 | 0.233 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| pias4 | | 1 | 116 | 232 | 236 | 0.133 | 0.115 | 0.112 | 0.058 | 0.079 | 0.016 | 0.351 | 0.047 | 0.015 | 0.092 | -0.002 | -0.038 | 0.317 |
|---|
| sp1 | | 8 | 26 | 71 | 57 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.033 | -0.370 | 0.202 | 0.284 | 0.227 | 0.304 | 0.091 | -0.068 |
|---|
| hmga1 | | 1 | 116 | 232 | 236 | 0.092 | 0.071 | 0.202 | 0.017 | 0.101 | 0.177 | -0.161 | 0.159 | 0.151 | 0.107 | 0.116 | -0.051 | 0.037 |
|---|
| bard1 | | 2 | 78 | 232 | 224 | 0.016 | 0.161 | 0.164 | 0.042 | 0.137 | 0.017 | 0.139 | 0.153 | 0.022 | 0.142 | 0.097 | 0.122 | 0.276 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| myst2 | | 2 | 78 | 232 | 224 | 0.094 | -0.045 | 0.049 | 0.001 | 0.128 | -0.004 | -0.235 | 0.006 | 0.002 | 0.212 | 0.092 | 0.133 | 0.212 |
|---|
| mdfi | | 7 | 30 | 42 | 35 | -0.050 | 0.215 | 0.036 | -0.005 | 0.054 | 0.263 | 0.176 | 0.130 | 0.296 | -0.041 | 0.074 | 0.076 | 0.056 |
|---|
GO Enrichment output for subnetwork 11143-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 |  | 1.023E-06 | 2.353E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 1.526E-06 | 1.755E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.975E-06 | 2.281E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 1.711E-03 |
|---|
| regulation of chromosome organization | GO:0033044 | | 5.126E-06 | 2.358E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.38E-06 | 2.062E-03 |
|---|
| interphase | GO:0051325 | | 5.897E-06 | 1.938E-03 |
|---|
| negative regulation of protein transport | GO:0051224 | | 6.507E-06 | 1.871E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 3.381E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.446E-05 | 3.325E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.52E-05 | 5.268E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 2.174E-07 | 5.312E-04 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 5.151E-07 | 6.292E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 6.852E-07 | 5.58E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.89E-07 | 5.43E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.081E-07 | 4.437E-04 |
|---|
| regulation of chromosome organization | GO:0033044 | | 1.129E-06 | 4.599E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 2.1E-06 | 7.33E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 3.239E-06 | 9.892E-04 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 4.399E-06 | 1.194E-03 |
|---|
| muscle cell migration | GO:0014812 | | 5.549E-06 | 1.356E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.549E-06 | 1.232E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 3.57E-07 | 8.59E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.454E-07 | 1.017E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 8.454E-07 | 6.78E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.458E-06 | 8.773E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.542E-06 | 7.42E-04 |
|---|
| interphase | GO:0051325 | | 1.746E-06 | 7.003E-04 |
|---|
| regulation of chromosome organization | GO:0033044 | | 1.853E-06 | 6.368E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 3.443E-06 | 1.036E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.498E-06 | 1.202E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 7.206E-06 | 1.734E-03 |
|---|
| muscle cell migration | GO:0014812 | | 7.727E-06 | 1.69E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 2.174E-07 | 5.312E-04 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 5.151E-07 | 6.292E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 6.852E-07 | 5.58E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.89E-07 | 5.43E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.081E-07 | 4.437E-04 |
|---|
| regulation of chromosome organization | GO:0033044 | | 1.129E-06 | 4.599E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 2.1E-06 | 7.33E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 3.239E-06 | 9.892E-04 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 4.399E-06 | 1.194E-03 |
|---|
| muscle cell migration | GO:0014812 | | 5.549E-06 | 1.356E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.549E-06 | 1.232E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 3.57E-07 | 8.59E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.454E-07 | 1.017E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 8.454E-07 | 6.78E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.458E-06 | 8.773E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.542E-06 | 7.42E-04 |
|---|
| interphase | GO:0051325 | | 1.746E-06 | 7.003E-04 |
|---|
| regulation of chromosome organization | GO:0033044 | | 1.853E-06 | 6.368E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 3.443E-06 | 1.036E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.498E-06 | 1.202E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 7.206E-06 | 1.734E-03 |
|---|
| muscle cell migration | GO:0014812 | | 7.727E-06 | 1.69E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 3.562E-11 | 1.272E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.122E-07 | 2.003E-04 |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 3.087E-07 | 3.674E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.608E-07 | 4.113E-04 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 5.526E-07 | 3.947E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 7.712E-07 | 4.59E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.549E-07 | 4.361E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 2.731E-06 | 1.219E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 3.333E-06 | 1.322E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 4.39E-06 | 1.568E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 6.117E-06 | 1.986E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 3.25E-11 | 1.185E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.25E-07 | 4.104E-04 |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 2.811E-07 | 3.418E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.458E-07 | 3.154E-04 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 5.033E-07 | 3.672E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.416E-07 | 4.509E-04 |
|---|
| interphase | GO:0051325 | | 8.182E-07 | 4.264E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.19E-07 | 3.735E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 2.487E-06 | 1.008E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 3.337E-06 | 1.217E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 6.019E-06 | 1.996E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 3.57E-07 | 8.59E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.454E-07 | 1.017E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 8.454E-07 | 6.78E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.458E-06 | 8.773E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.542E-06 | 7.42E-04 |
|---|
| interphase | GO:0051325 | | 1.746E-06 | 7.003E-04 |
|---|
| regulation of chromosome organization | GO:0033044 | | 1.853E-06 | 6.368E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 3.443E-06 | 1.036E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.498E-06 | 1.202E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 7.206E-06 | 1.734E-03 |
|---|
| muscle cell migration | GO:0014812 | | 7.727E-06 | 1.69E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 1.023E-06 | 2.353E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 1.526E-06 | 1.755E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.975E-06 | 2.281E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 1.711E-03 |
|---|
| regulation of chromosome organization | GO:0033044 | | 5.126E-06 | 2.358E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.38E-06 | 2.062E-03 |
|---|
| interphase | GO:0051325 | | 5.897E-06 | 1.938E-03 |
|---|
| negative regulation of protein transport | GO:0051224 | | 6.507E-06 | 1.871E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 3.381E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.446E-05 | 3.325E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.52E-05 | 5.268E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 1.023E-06 | 2.353E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 1.526E-06 | 1.755E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.975E-06 | 2.281E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 1.711E-03 |
|---|
| regulation of chromosome organization | GO:0033044 | | 5.126E-06 | 2.358E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.38E-06 | 2.062E-03 |
|---|
| interphase | GO:0051325 | | 5.897E-06 | 1.938E-03 |
|---|
| negative regulation of protein transport | GO:0051224 | | 6.507E-06 | 1.871E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 3.381E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.446E-05 | 3.325E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.52E-05 | 5.268E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 4.833E-07 | 8.907E-04 |
|---|
| regulation of chromosome organization | GO:0033044 | | 8.843E-07 | 8.148E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 1.148E-06 | 7.055E-04 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 1.148E-06 | 5.291E-04 |
|---|
| negative regulation of protein transport | GO:0051224 | | 5.299E-06 | 1.953E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 6.129E-06 | 1.883E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 9.127E-06 | 2.403E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 1.158E-05 | 2.669E-03 |
|---|
| regulation of intracellular transport | GO:0032386 | | 1.773E-05 | 3.631E-03 |
|---|
| muscle cell migration | GO:0014812 | | 2.781E-05 | 5.125E-03 |
|---|
| lysogeny | GO:0030069 | | 2.781E-05 | 4.659E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 1.023E-06 | 2.353E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 1.526E-06 | 1.755E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.975E-06 | 2.281E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 1.711E-03 |
|---|
| regulation of chromosome organization | GO:0033044 | | 5.126E-06 | 2.358E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.38E-06 | 2.062E-03 |
|---|
| interphase | GO:0051325 | | 5.897E-06 | 1.938E-03 |
|---|
| negative regulation of protein transport | GO:0051224 | | 6.507E-06 | 1.871E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 3.381E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.446E-05 | 3.325E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.52E-05 | 5.268E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of nucleocytoplasmic transport | GO:0046823 | | 8.558E-07 | 2.031E-03 |
|---|
| negative regulation of intracellular transport | GO:0032387 | | 1.245E-06 | 1.477E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.024E-06 | 1.601E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.024E-06 | 1.201E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.395E-06 | 1.611E-03 |
|---|
| interphase | GO:0051325 | | 3.718E-06 | 1.47E-03 |
|---|
| negative regulation of protein transport | GO:0051224 | | 6.136E-06 | 2.08E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 9.015E-06 | 2.674E-03 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.074E-05 | 2.832E-03 |
|---|
| definitive hemopoiesis | GO:0060216 | | 1.393E-05 | 3.305E-03 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 1.719E-05 | 3.708E-03 |
|---|
