Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 9551-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1890 | 1.026e-02 | 1.227e-02 | 1.010e-01 |
|---|
| IPC-NIBC-129 | 0.2687 | 4.809e-02 | 6.107e-02 | 4.408e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2470 | 1.605e-02 | 2.356e-02 | 3.456e-01 |
|---|
| Loi_GPL570 | 0.2207 | 4.758e-02 | 4.723e-02 | 2.457e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1487 | 2.400e-05 | 1.400e-04 | 2.810e-04 |
|---|
| Parker_GPL1390 | 0.2611 | 1.144e-01 | 1.154e-01 | 5.764e-01 |
|---|
| Parker_GPL887 | 0.0515 | 8.345e-01 | 8.508e-01 | 8.858e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3886 | 4.384e-01 | 4.025e-01 | 9.485e-01 |
|---|
| Schmidt | 0.2267 | 1.352e-02 | 1.906e-02 | 1.645e-01 |
|---|
| Sotiriou | 0.2967 | 2.608e-03 | 7.630e-04 | 6.425e-02 |
|---|
| Wang | 0.3071 | 1.326e-01 | 9.565e-02 | 4.376e-01 |
|---|
| Zhang | 0.1196 | 1.630e-02 | 7.451e-03 | 4.225e-02 |
|---|
| Zhou | 0.4103 | 4.661e-02 | 4.798e-02 | 2.974e-01 |
|---|
Expression data for subnetwork 9551-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 9551-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| prpf40a |   | 2 | 104 | 168 | 164 | 0.066 | 0.050 | 0.158 | 0.034 | 0.085 | 0.107 | 0.188 | -0.128 | 0.207 | 0.059 | -0.007 | -0.123 | 0.191 |
|---|
| ndufa6 | | 1 | 164 | 337 | 339 | -0.100 | 0.136 | 0.126 | 0.078 | 0.141 | 0.038 | 0.177 | 0.230 | 0.145 | 0.070 | 0.190 | 0.173 | -0.019 |
|---|
| bat3 | | 1 | 164 | 337 | 339 | 0.024 | 0.160 | 0.103 | -0.134 | 0.117 | 0.311 | -0.373 | 0.202 | 0.032 | 0.079 | -0.037 | -0.137 | 0.164 |
|---|
| ccnb2 | | 16 | 13 | 153 | 125 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.144 | 0.211 | 0.463 |
|---|
| sf3a2 | | 1 | 164 | 337 | 339 | 0.019 | 0.073 | 0.116 | 0.118 | 0.089 | 0.090 | 0.351 | 0.271 | 0.102 | 0.137 | -0.072 | 0.072 | 0.053 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| cpsf1 | | 3 | 79 | 282 | 264 | 0.020 | -0.019 | 0.031 | 0.075 | 0.102 | 0.120 | 0.204 | 0.157 | -0.009 | 0.093 | 0.095 | 0.089 | 0.102 |
|---|
| snrpd1 | | 2 | 104 | 337 | 327 | -0.026 | 0.257 | 0.128 | 0.254 | 0.106 | 0.174 | 0.255 | 0.155 | 0.190 | 0.111 | 0.076 | 0.011 | 0.205 |
|---|
| mcm2 | | 4 | 60 | 216 | 192 | 0.151 | 0.254 | 0.188 | 0.128 | 0.154 | 0.220 | -0.034 | 0.267 | 0.224 | 0.200 | 0.101 | 0.012 | 0.255 |
|---|
| atp5j2 | | 1 | 164 | 337 | 339 | -0.104 | 0.144 | 0.079 | 0.003 | 0.095 | -0.009 | 0.274 | 0.220 | 0.065 | 0.030 | 0.099 | 0.015 | 0.162 |
|---|
| luc7l3 | | 7 | 38 | 1 | 5 | 0.006 | 0.111 | -0.046 | -0.016 | 0.121 | 0.071 | -0.318 | -0.084 | 0.159 | 0.098 | 0.155 | 0.067 | 0.065 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| mmp11 | | 2 | 104 | 168 | 164 | 0.125 | 0.234 | 0.031 | 0.046 | 0.104 | -0.095 | -0.069 | 0.143 | 0.041 | 0.035 | 0.217 | 0.152 | 0.240 |
|---|
| sf3b3 | | 7 | 38 | 1 | 5 | 0.119 | 0.241 | 0.143 | -0.019 | 0.082 | 0.222 | 0.007 | 0.271 | 0.168 | 0.060 | 0.017 | -0.077 | 0.372 |
|---|
GO Enrichment output for subnetwork 9551-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 |  | 2.743E-07 | 6.308E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.914E-07 | 4.501E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.376E-07 | 4.122E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 5.376E-07 | 3.091E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 7.161E-07 | 3.294E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 3.68E-06 | 1.411E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 1.409E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 8.342E-06 | 2.398E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 2.245E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 2.215E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.297E-05 | 2.712E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 1.24E-07 | 3.029E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 2.269E-07 | 2.772E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 2.948E-07 | 2.401E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 3.75E-07 | 2.29E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 6.99E-07 | 3.415E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.363E-06 | 5.55E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.351E-06 | 8.204E-04 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.985E-06 | 9.116E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.346E-06 | 9.082E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 5.044E-06 | 1.232E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 6.076E-06 | 1.35E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 1.716E-07 | 4.128E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.14E-07 | 3.778E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 4.079E-07 | 3.272E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.188E-07 | 3.12E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 9.668E-07 | 4.652E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.885E-06 | 7.558E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.249E-06 | 1.117E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 4.126E-06 | 1.241E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.512E-06 | 1.206E-03 |
|---|
| interphase | GO:0051325 | | 5.107E-06 | 1.229E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 6.32E-06 | 1.382E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 1.24E-07 | 3.029E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 2.269E-07 | 2.772E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 2.948E-07 | 2.401E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 3.75E-07 | 2.29E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 6.99E-07 | 3.415E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.363E-06 | 5.55E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.351E-06 | 8.204E-04 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.985E-06 | 9.116E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.346E-06 | 9.082E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 5.044E-06 | 1.232E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 6.076E-06 | 1.35E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 1.716E-07 | 4.128E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.14E-07 | 3.778E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 4.079E-07 | 3.272E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.188E-07 | 3.12E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 9.668E-07 | 4.652E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.885E-06 | 7.558E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.249E-06 | 1.117E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 4.126E-06 | 1.241E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.512E-06 | 1.206E-03 |
|---|
| interphase | GO:0051325 | | 5.107E-06 | 1.229E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 6.32E-06 | 1.382E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| small nuclear ribonucleoprotein complex | GO:0030532 | | 8.687E-09 | 3.102E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.766E-08 | 8.51E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.402E-07 | 1.668E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.755E-07 | 5.138E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.161E-06 | 8.291E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 3.772E-06 | 2.245E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.262E-05 | 6.439E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.448E-05 | 6.462E-03 |
|---|
| nuclear origin of replication recognition complex | GO:0005664 | | 1.448E-05 | 5.744E-03 |
|---|
| response to UV | GO:0009411 | | 1.529E-05 | 5.461E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.626E-05 | 5.278E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| small nuclear ribonucleoprotein complex | GO:0030532 | | 2.809E-09 | 1.025E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.325E-08 | 4.241E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.507E-07 | 1.833E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.316E-07 | 2.112E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.282E-07 | 3.124E-04 |
|---|
| interphase | GO:0051325 | | 4.725E-07 | 2.873E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 1.668E-06 | 8.693E-04 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 4.689E-06 | 2.138E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.039E-06 | 2.042E-03 |
|---|
| response to UV | GO:0009411 | | 5.788E-06 | 2.111E-03 |
|---|
| nuclear mRNA 3'-splice site recognition | GO:0000389 | | 5.984E-06 | 1.985E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 1.716E-07 | 4.128E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.14E-07 | 3.778E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 4.079E-07 | 3.272E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.188E-07 | 3.12E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 9.668E-07 | 4.652E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.885E-06 | 7.558E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.249E-06 | 1.117E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 4.126E-06 | 1.241E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.512E-06 | 1.206E-03 |
|---|
| interphase | GO:0051325 | | 5.107E-06 | 1.229E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 6.32E-06 | 1.382E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 2.743E-07 | 6.308E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.914E-07 | 4.501E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.376E-07 | 4.122E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 5.376E-07 | 3.091E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 7.161E-07 | 3.294E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 3.68E-06 | 1.411E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 1.409E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 8.342E-06 | 2.398E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 2.245E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 2.215E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.297E-05 | 2.712E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 2.743E-07 | 6.308E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.914E-07 | 4.501E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.376E-07 | 4.122E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 5.376E-07 | 3.091E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 7.161E-07 | 3.294E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 3.68E-06 | 1.411E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 1.409E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 8.342E-06 | 2.398E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 2.245E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 2.215E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.297E-05 | 2.712E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 2.743E-07 | 6.308E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.914E-07 | 4.501E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.376E-07 | 4.122E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 5.376E-07 | 3.091E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 7.161E-07 | 3.294E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 3.68E-06 | 1.411E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 1.409E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 8.342E-06 | 2.398E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 2.245E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 2.215E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.297E-05 | 2.712E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 2.743E-07 | 6.308E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 3.914E-07 | 4.501E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 5.376E-07 | 4.122E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 5.376E-07 | 3.091E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 7.161E-07 | 3.294E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 3.68E-06 | 1.411E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 1.409E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 8.342E-06 | 2.398E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 2.245E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 2.215E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.297E-05 | 2.712E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mRNA cleavage | GO:0006379 | | 2.979E-07 | 7.07E-04 |
|---|
| mRNA polyadenylation | GO:0006378 | | 5.452E-07 | 6.468E-04 |
|---|
| RNA polyadenylation | GO:0043631 | | 9.003E-07 | 7.121E-04 |
|---|
| mRNA 3'-end processing | GO:0031124 | | 9.003E-07 | 5.341E-04 |
|---|
| RNA 3'-end processing | GO:0031123 | | 1.382E-06 | 6.561E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.268E-06 | 1.292E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.455E-06 | 2.188E-03 |
|---|
| interphase | GO:0051325 | | 7.067E-06 | 2.096E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 1.73E-05 | 4.561E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.184E-05 | 7.556E-03 |
|---|
| response to UV | GO:0009411 | | 3.888E-05 | 8.387E-03 |
|---|
