Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5599-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2331 | 9.093e-03 | 1.086e-02 | 9.226e-02 |
|---|
| IPC-NIBC-129 | 0.2518 | 6.134e-02 | 7.904e-02 | 5.153e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2529 | 5.120e-03 | 8.431e-03 | 1.731e-01 |
|---|
| Loi_GPL570 | 0.2742 | 5.997e-02 | 5.955e-02 | 2.910e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1433 | 5.000e-05 | 2.690e-04 | 8.170e-04 |
|---|
| Parker_GPL1390 | 0.2434 | 6.172e-02 | 5.885e-02 | 4.228e-01 |
|---|
| Parker_GPL887 | 0.1103 | 6.127e-01 | 6.426e-01 | 6.618e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2916 | 1.214e-01 | 9.156e-02 | 5.804e-01 |
|---|
| Schmidt | 0.2159 | 5.221e-03 | 7.666e-03 | 7.790e-02 |
|---|
| Sotiriou | 0.3547 | 2.619e-03 | 7.670e-04 | 6.445e-02 |
|---|
| Wang | 0.0984 | 1.446e-01 | 1.058e-01 | 4.616e-01 |
|---|
| Zhang | 0.2522 | 3.268e-01 | 2.697e-01 | 6.187e-01 |
|---|
| Zhou | 0.4101 | 1.166e-01 | 1.303e-01 | 6.103e-01 |
|---|
Expression data for subnetwork 5599-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5599-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn1a |   | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| tubb | | 8 | 33 | 93 | 80 | 0.107 | 0.221 | 0.070 | 0.090 | 0.095 | 0.278 | -0.325 | 0.185 | 0.139 | 0.202 | -0.061 | -0.142 | 0.101 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| ywhaz | | 11 | 21 | 31 | 20 | 0.124 | 0.089 | 0.087 | 0.200 | 0.141 | 0.110 | 0.228 | 0.199 | 0.056 | 0.123 | -0.026 | 0.103 | 0.213 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| brca1 | | 8 | 33 | 175 | 150 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | -0.124 | 0.305 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 | 0.209 |
|---|
| prkci | | 12 | 20 | 31 | 19 | 0.065 | 0.104 | 0.012 | 0.170 | 0.112 | 0.088 | -0.103 | -0.170 | 0.196 | 0.128 | -0.054 | 0.124 | 0.149 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| pkd1 | | 9 | 27 | 234 | 205 | -0.021 | 0.055 | 0.007 | 0.037 | 0.071 | 0.184 | 0.256 | -0.217 | -0.068 | -0.001 | 0.046 | 0.077 | 0.151 |
|---|
| cript | | 2 | 104 | 345 | 332 | -0.059 | 0.179 | 0.045 | 0.159 | 0.052 | 0.139 | 0.048 | 0.115 | -0.033 | 0.017 | -0.012 | 0.204 | 0.283 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| gabbr1 | | 6 | 43 | 88 | 77 | 0.003 | -0.016 | -0.022 | -0.051 | 0.082 | 0.119 | 0.584 | -0.082 | 0.049 | 0.057 | 0.011 | 0.096 | 0.116 |
|---|
| mark4 | | 5 | 50 | 182 | 159 | 0.114 | 0.070 | 0.091 | 0.001 | 0.086 | -0.135 | 0.437 | -0.005 | 0.027 | 0.084 | 0.059 | 0.074 | 0.104 |
|---|
| mapk8 | | 1 | 164 | 345 | 346 | -0.104 | 0.089 | -0.052 | 0.207 | 0.063 | undef | 0.357 | -0.112 | 0.229 | -0.103 | 0.107 | 0.038 | -0.236 |
|---|
GO Enrichment output for subnetwork 5599-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 |  | 5.952E-11 | 1.369E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.22E-10 | 2.553E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.492E-09 | 1.144E-06 |
|---|
| spindle organization | GO:0007051 | | 2.817E-09 | 1.62E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 3.896E-09 | 1.792E-06 |
|---|
| cell killing | GO:0001906 | | 1.177E-08 | 4.512E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.51E-08 | 1.482E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 6.703E-08 | 1.927E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.97E-08 | 1.781E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.37E-07 | 1.465E-04 |
|---|
| interphase | GO:0051325 | | 7.146E-07 | 1.494E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 9.272E-12 | 2.265E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 3.877E-10 | 4.736E-07 |
|---|
| spindle organization | GO:0007051 | | 4.004E-10 | 3.26E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 9.123E-10 | 5.572E-07 |
|---|
| cell killing | GO:0001906 | | 2.509E-09 | 1.226E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.141E-09 | 3.315E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.646E-08 | 5.746E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.305E-08 | 7.039E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.273E-07 | 3.456E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.668E-07 | 6.517E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.919E-07 | 6.483E-05 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.332E-11 | 3.205E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 5.568E-10 | 6.698E-07 |
|---|
| spindle organization | GO:0007051 | | 6.254E-10 | 5.016E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.31E-09 | 7.879E-07 |
|---|
| cell killing | GO:0001906 | | 3.602E-09 | 1.733E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.269E-08 | 5.089E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.166E-08 | 7.446E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.306E-08 | 9.943E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.693E-07 | 4.525E-05 |
|---|
| interphase | GO:0051325 | | 1.978E-07 | 4.76E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.82E-07 | 8.356E-05 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 9.272E-12 | 2.265E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 3.877E-10 | 4.736E-07 |
|---|
| spindle organization | GO:0007051 | | 4.004E-10 | 3.26E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 9.123E-10 | 5.572E-07 |
|---|
| cell killing | GO:0001906 | | 2.509E-09 | 1.226E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.141E-09 | 3.315E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.646E-08 | 5.746E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.305E-08 | 7.039E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.273E-07 | 3.456E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.668E-07 | 6.517E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.919E-07 | 6.483E-05 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.332E-11 | 3.205E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 5.568E-10 | 6.698E-07 |
|---|
| spindle organization | GO:0007051 | | 6.254E-10 | 5.016E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.31E-09 | 7.879E-07 |
|---|
| cell killing | GO:0001906 | | 3.602E-09 | 1.733E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.269E-08 | 5.089E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.166E-08 | 7.446E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.306E-08 | 9.943E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.693E-07 | 4.525E-05 |
|---|
| interphase | GO:0051325 | | 1.978E-07 | 4.76E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.82E-07 | 8.356E-05 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.285E-10 | 8.161E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.073E-09 | 1.915E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.642E-09 | 1.955E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.829E-09 | 3.419E-06 |
|---|
| kinase regulator activity | GO:0019207 | | 9.85E-09 | 7.035E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.356E-08 | 8.073E-06 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.832E-08 | 9.344E-06 |
|---|
| microtubule organizing center part | GO:0044450 | | 2.153E-08 | 9.611E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.766E-08 | 1.891E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.384E-08 | 2.994E-05 |
|---|
| gamma-tubulin complex | GO:0000930 | | 1.02E-07 | 3.311E-05 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.898E-09 | 1.057E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.73E-09 | 1.41E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.9E-08 | 3.526E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 5.939E-08 | 5.416E-05 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.176E-07 | 8.577E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.326E-07 | 8.061E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.858E-07 | 1.49E-04 |
|---|
| response to UV | GO:0009411 | | 4.19E-07 | 1.911E-04 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.316E-06 | 5.334E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.316E-06 | 4.801E-04 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 3.599E-06 | 1.194E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.332E-11 | 3.205E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 5.568E-10 | 6.698E-07 |
|---|
| spindle organization | GO:0007051 | | 6.254E-10 | 5.016E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.31E-09 | 7.879E-07 |
|---|
| cell killing | GO:0001906 | | 3.602E-09 | 1.733E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.269E-08 | 5.089E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.166E-08 | 7.446E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.306E-08 | 9.943E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.693E-07 | 4.525E-05 |
|---|
| interphase | GO:0051325 | | 1.978E-07 | 4.76E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.82E-07 | 8.356E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 5.952E-11 | 1.369E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.22E-10 | 2.553E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.492E-09 | 1.144E-06 |
|---|
| spindle organization | GO:0007051 | | 2.817E-09 | 1.62E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 3.896E-09 | 1.792E-06 |
|---|
| cell killing | GO:0001906 | | 1.177E-08 | 4.512E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.51E-08 | 1.482E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 6.703E-08 | 1.927E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.97E-08 | 1.781E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.37E-07 | 1.465E-04 |
|---|
| interphase | GO:0051325 | | 7.146E-07 | 1.494E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 5.952E-11 | 1.369E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.22E-10 | 2.553E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.492E-09 | 1.144E-06 |
|---|
| spindle organization | GO:0007051 | | 2.817E-09 | 1.62E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 3.896E-09 | 1.792E-06 |
|---|
| cell killing | GO:0001906 | | 1.177E-08 | 4.512E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.51E-08 | 1.482E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 6.703E-08 | 1.927E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.97E-08 | 1.781E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.37E-07 | 1.465E-04 |
|---|
| interphase | GO:0051325 | | 7.146E-07 | 1.494E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 5.952E-11 | 1.369E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.22E-10 | 2.553E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.492E-09 | 1.144E-06 |
|---|
| spindle organization | GO:0007051 | | 2.817E-09 | 1.62E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 3.896E-09 | 1.792E-06 |
|---|
| cell killing | GO:0001906 | | 1.177E-08 | 4.512E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.51E-08 | 1.482E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 6.703E-08 | 1.927E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.97E-08 | 1.781E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.37E-07 | 1.465E-04 |
|---|
| interphase | GO:0051325 | | 7.146E-07 | 1.494E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 5.952E-11 | 1.369E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.22E-10 | 2.553E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.492E-09 | 1.144E-06 |
|---|
| spindle organization | GO:0007051 | | 2.817E-09 | 1.62E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 3.896E-09 | 1.792E-06 |
|---|
| cell killing | GO:0001906 | | 1.177E-08 | 4.512E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.51E-08 | 1.482E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 6.703E-08 | 1.927E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.97E-08 | 1.781E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.37E-07 | 1.465E-04 |
|---|
| interphase | GO:0051325 | | 7.146E-07 | 1.494E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.694E-10 | 4.021E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 3.451E-10 | 4.095E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.417E-09 | 1.121E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 3.702E-09 | 2.196E-06 |
|---|
| spindle organization | GO:0007051 | | 4.422E-09 | 2.099E-06 |
|---|
| detection of mechanical stimulus | GO:0050982 | | 8E-09 | 3.164E-06 |
|---|
| cartilage condensation | GO:0001502 | | 1.118E-08 | 3.792E-06 |
|---|
| cell killing | GO:0001906 | | 1.118E-08 | 3.318E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.201E-08 | 1.371E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 6.418E-08 | 1.523E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.623E-08 | 1.429E-05 |
|---|
