Study VanDeVijver-ER-neg
Study informations
122 subnetworks in total page | file
1481 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1096
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| Desmedt | 0.3353 | 1.380e-03 | 2.300e-05 | 1.562e-01 | 4.959e-09 |
|---|
| IPC | 0.3408 | 3.488e-01 | 1.785e-01 | 9.357e-01 | 5.824e-02 |
|---|
| Loi | 0.4710 | 7.100e-05 | 0.000e+00 | 5.617e-02 | 0.000e+00 |
|---|
| Schmidt | 0.5950 | 1.000e-06 | 0.000e+00 | 1.234e-01 | 0.000e+00 |
|---|
| Wang | 0.2563 | 7.972e-03 | 6.808e-02 | 2.344e-01 | 1.272e-04 |
|---|
Expression data for subnetwork 1096 in each dataset
Desmedt |
IPC |
Loi |
Schmidt |
Wang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1096 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC | Loi | Schmidt | Wang |
|---|
| CADM4 |   | 1 | 652 | 1094 | 1103 | -0.135 | -0.077 | 0.034 | 0.107 | -0.241 |
|---|
| EP300 | | 71 | 3 | 1 | 2 | 0.016 | -0.149 | 0.087 | 0.102 | 0.025 |
|---|
| PTPRO | | 1 | 652 | 1094 | 1103 | -0.055 | 0.133 | -0.086 | -0.058 | 0.134 |
|---|
| ARHGEF7 | | 12 | 55 | 492 | 475 | -0.180 | -0.074 | -0.061 | 0.208 | 0.015 |
|---|
| TRAF2 | | 6 | 120 | 206 | 200 | -0.107 | 0.185 | -0.172 | -0.013 | -0.092 |
|---|
| RALGDS | | 5 | 148 | 647 | 621 | 0.212 | -0.011 | 0.199 | 0.033 | -0.009 |
|---|
| HIST2H2BE | | 5 | 148 | 492 | 498 | 0.196 | -0.086 | 0.123 | -0.180 | -0.104 |
|---|
| RACGAP1 | | 3 | 265 | 778 | 770 | -0.166 | 0.283 | -0.164 | 0.073 | 0.188 |
|---|
| CNKSR1 | | 2 | 391 | 647 | 646 | -0.013 | -0.025 | 0.209 | -0.012 | 0.036 |
|---|
| HMOX1 | | 2 | 391 | 977 | 968 | -0.063 | 0.109 | -0.120 | -0.110 | 0.152 |
|---|
| IQGAP2 | | 16 | 34 | 117 | 119 | 0.264 | -0.170 | -0.051 | -0.112 | 0.049 |
|---|
| CALR | | 10 | 67 | 117 | 121 | -0.216 | -0.105 | 0.002 | -0.061 | -0.075 |
|---|
| FGFR3 | | 5 | 148 | 963 | 938 | -0.006 | 0.160 | 0.071 | 0.018 | -0.111 |
|---|
| IRF4 | | 2 | 391 | 1094 | 1081 | -0.123 | 0.153 | -0.250 | -0.172 | -0.103 |
|---|
| PCNA | | 3 | 265 | 57 | 71 | -0.138 | 0.243 | -0.158 | 0.027 | 0.003 |
|---|
| IRAK1 | | 4 | 198 | 206 | 205 | -0.170 | 0.266 | -0.023 | 0.092 | -0.102 |
|---|
| CDC42 | | 44 | 9 | 1 | 6 | 0.036 | 0.047 | 0.242 | -0.027 | -0.042 |
|---|
| MCF2L | | 1 | 652 | 1094 | 1103 | -0.096 | 0.017 | -0.004 | 0.073 | -0.095 |
|---|
| PAK2 | | 20 | 24 | 1 | 11 | -0.019 | 0.014 | 0.161 | 0.081 | 0.062 |
|---|
| AMH | | 3 | 265 | 778 | 770 | 0.124 | 0.103 | 0.056 | 0.113 | 0.301 |
|---|
| IGF1 | | 6 | 120 | 398 | 386 | 0.265 | -0.207 | -0.028 | 0.059 | -0.036 |
|---|
| BRD7 | | 4 | 198 | 906 | 894 | -0.068 | -0.090 | 0.019 | -0.188 | -0.086 |
|---|
| ADAM15 | | 13 | 47 | 492 | 474 | 0.205 | -0.048 | -0.078 | -0.208 | -0.048 |
|---|
| CAV2 | | 52 | 6 | 117 | 118 | 0.380 | -0.013 | 0.165 | 0.065 | 0.101 |
|---|
| TLR5 | | 2 | 391 | 206 | 220 | 0.165 | -0.056 | 0.111 | -0.176 | 0.144 |
|---|
| RASGRP1 | | 2 | 391 | 1094 | 1081 | 0.008 | -0.076 | -0.084 | 0.066 | -0.109 |
|---|
| TUBA4A | | 3 | 265 | 715 | 705 | -0.041 | 0.157 | 0.136 | -0.010 | 0.156 |
|---|
| IGFBP3 | | 2 | 391 | 1039 | 1033 | 0.165 | -0.033 | -0.031 | 0.034 | -0.065 |
|---|
| FGFR4 | | 37 | 12 | 262 | 262 | 0.171 | -0.011 | 0.188 | -0.089 | -0.049 |
|---|
| PXN | | 5 | 148 | 439 | 432 | 0.085 | -0.088 | 0.284 | -0.022 | 0.114 |
|---|
| BRD4 | | 18 | 26 | 1 | 12 | 0.156 | -0.119 | 0.095 | -0.075 | -0.044 |
|---|
| AKT1 | | 13 | 47 | 444 | 430 | -0.012 | 0.045 | 0.126 | -0.099 | -0.168 |
|---|
| AKT2 | | 3 | 265 | 778 | 770 | 0.179 | 0.110 | -0.118 | -0.003 | -0.092 |
|---|
| PIK3R1 | | 91 | 1 | 1 | 1 | 0.189 | -0.237 | 0.381 | 0.065 | -0.002 |
|---|
| RAP1B | | 1 | 652 | 1094 | 1103 | 0.028 | 0.270 | -0.042 | 0.110 | 0.204 |
|---|
| MMP1 | | 3 | 265 | 1039 | 1013 | 0.122 | 0.192 | 0.014 | 0.036 | 0.260 |
|---|
| CAV1 | | 10 | 67 | 439 | 428 | 0.251 | -0.092 | 0.124 | 0.079 | 0.119 |
|---|
| RASA1 | | 9 | 77 | 492 | 494 | 0.237 | -0.079 | 0.146 | 0.127 | 0.149 |
|---|
| EGFR | | 72 | 2 | 117 | 117 | 0.064 | -0.195 | 0.240 | -0.205 | 0.065 |
|---|
| FGFR1 | | 41 | 10 | 129 | 123 | 0.205 | -0.036 | 0.200 | 0.087 | -0.015 |
|---|
| INSR | | 47 | 7 | 1 | 5 | 0.135 | 0.063 | 0.173 | 0.135 | -0.072 |
|---|
| SH3RF1 | | 14 | 42 | 117 | 120 | undef | 0.144 | 0.238 | undef | undef |
|---|
| CCNT1 | | 18 | 26 | 33 | 32 | 0.163 | 0.008 | -0.028 | 0.162 | -0.213 |
|---|
| IRAK2 | | 3 | 265 | 1094 | 1070 | undef | 0.183 | 0.023 | undef | undef |
|---|
| EIF2S1 | | 1 | 652 | 1094 | 1103 | 0.075 | 0.153 | -0.055 | 0.021 | 0.110 |
|---|
| FGB | | 3 | 265 | 910 | 895 | -0.100 | 0.136 | 0.231 | -0.035 | -0.016 |
|---|
| RGL2 | | 3 | 265 | 647 | 632 | 0.105 | -0.107 | 0.227 | -0.146 | -0.002 |
|---|
| HRAS | | 3 | 265 | 1094 | 1070 | -0.081 | 0.037 | 0.090 | 0.098 | -0.005 |
|---|
| GAB1 | | 2 | 391 | 262 | 283 | -0.192 | -0.069 | 0.084 | -0.117 | -0.212 |
|---|
GO Enrichment output for subnetwork 1096 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 |  | 5.012E-10 | 1.153E-06 |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 9.523E-08 | 1.095E-04 |
|---|
| insulin receptor signaling pathway | GO:0008286 | | 1.136E-07 | 8.706E-05 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.136E-07 | 6.53E-05 |
|---|
| positive regulation of cellular catabolic process | GO:0031331 | | 2.877E-07 | 1.323E-04 |
|---|
| regulation of protein complex assembly | GO:0043254 | | 2.912E-07 | 1.116E-04 |
|---|
| Ras protein signal transduction | GO:0007265 | | 7.043E-07 | 2.314E-04 |
|---|
| cellular response to insulin stimulus | GO:0032869 | | 7.146E-07 | 2.054E-04 |
|---|
| regulation of vasodilation | GO:0042312 | | 7.842E-07 | 2.004E-04 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.224E-06 | 2.814E-04 |
|---|
| nuclear migration | GO:0007097 | | 1.224E-06 | 2.558E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.269E-10 | 3.101E-07 |
|---|
| insulin receptor signaling pathway | GO:0008286 | | 6.798E-10 | 8.303E-07 |
|---|
| cellular response to insulin stimulus | GO:0032869 | | 6.13E-09 | 4.992E-06 |
|---|
| response to insulin stimulus | GO:0032868 | | 2.319E-08 | 1.416E-05 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 7.514E-08 | 3.671E-05 |
|---|
| positive regulation of cellular catabolic process | GO:0031331 | | 9.061E-08 | 3.689E-05 |
|---|
| regulation of protein complex assembly | GO:0043254 | | 1.397E-07 | 4.877E-05 |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 1.537E-07 | 4.694E-05 |
|---|
| response to peptide hormone stimulus | GO:0043434 | | 1.537E-07 | 4.173E-05 |
|---|
| regulation of vasodilation | GO:0042312 | | 2.477E-07 | 6.051E-05 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.094E-07 | 1.131E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.008E-10 | 2.425E-07 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 3.717E-08 | 4.471E-05 |
|---|
| insulin receptor signaling pathway | GO:0008286 | | 4.588E-08 | 3.679E-05 |
|---|
| positive regulation of cellular catabolic process | GO:0031331 | | 9.752E-08 | 5.866E-05 |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 1.15E-07 | 5.534E-05 |
|---|
| regulation of protein complex assembly | GO:0043254 | | 1.271E-07 | 5.098E-05 |
|---|
| regulation of vasodilation | GO:0042312 | | 2.665E-07 | 9.162E-05 |
|---|
| cellular response to insulin stimulus | GO:0032869 | | 2.94E-07 | 8.842E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 4.62E-07 | 1.235E-04 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.393E-07 | 1.298E-04 |
|---|
| positive regulation of vasoconstriction | GO:0045907 | | 5.393E-07 | 1.18E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 5.012E-10 | 1.153E-06 |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 9.523E-08 | 1.095E-04 |
|---|
| insulin receptor signaling pathway | GO:0008286 | | 1.136E-07 | 8.706E-05 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.136E-07 | 6.53E-05 |
|---|
| positive regulation of cellular catabolic process | GO:0031331 | | 2.877E-07 | 1.323E-04 |
|---|
| regulation of protein complex assembly | GO:0043254 | | 2.912E-07 | 1.116E-04 |
|---|
| Ras protein signal transduction | GO:0007265 | | 7.043E-07 | 2.314E-04 |
|---|
| cellular response to insulin stimulus | GO:0032869 | | 7.146E-07 | 2.054E-04 |
|---|
| regulation of vasodilation | GO:0042312 | | 7.842E-07 | 2.004E-04 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.224E-06 | 2.814E-04 |
|---|
| nuclear migration | GO:0007097 | | 1.224E-06 | 2.558E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 5.012E-10 | 1.153E-06 |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 9.523E-08 | 1.095E-04 |
|---|
| insulin receptor signaling pathway | GO:0008286 | | 1.136E-07 | 8.706E-05 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.136E-07 | 6.53E-05 |
|---|
| positive regulation of cellular catabolic process | GO:0031331 | | 2.877E-07 | 1.323E-04 |
|---|
| regulation of protein complex assembly | GO:0043254 | | 2.912E-07 | 1.116E-04 |
|---|
| Ras protein signal transduction | GO:0007265 | | 7.043E-07 | 2.314E-04 |
|---|
| cellular response to insulin stimulus | GO:0032869 | | 7.146E-07 | 2.054E-04 |
|---|
| regulation of vasodilation | GO:0042312 | | 7.842E-07 | 2.004E-04 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.224E-06 | 2.814E-04 |
|---|
| nuclear migration | GO:0007097 | | 1.224E-06 | 2.558E-04 |
|---|
