Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6932

score

Expression data for subnetwork 6932 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6932 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
TEK		18	86	83	95	-0.149	-0.049	0.174	0.015	0.113
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
HACL1		4	440	590	585	0.028	-0.071	undef	-0.278	undef
NF1		9	196	552	541	0.110	-0.052	-0.032	0.090	-0.094
DYNLT3		2	743	590	616	0.117	0.208	0.030	0.137	0.187
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
HOOK2		1	1195	590	638	-0.181	0.256	0.095	0.116	0.181
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
CDK3		7	256	590	570	-0.076	0.189	-0.041	-0.089	0.082
CD5		1	1195	590	638	-0.080	-0.131	-0.112	-0.221	0.030
AKTIP		1	1195	590	638	-0.033	0.031	-0.125	undef	0.248
CDK6		16	104	318	314	-0.229	0.107	-0.028	-0.118	0.104
PTPRK		14	117	83	96	0.156	0.141	-0.094	0.048	-0.024
DNASE1		4	440	590	585	0.165	-0.301	-0.088	-0.078	0.114
AKT1		16	104	236	227	0.045	0.126	-0.099	undef	-0.168
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
DSP		7	256	590	570	0.054	0.235	-0.119	-0.033	0.053
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
TUBA1B		6	301	590	582	0.116	0.094	0.249	0.101	0.128
RNF6		4	440	590	585	0.109	-0.128	0.002	0.041	-0.018
PAOX		3	557	1	63	0.255	-0.190	0.163	undef	-0.086
SMAD2		4	440	590	585	-0.039	-0.199	0.076	-0.003	0.247
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
E2F2		13	124	1	35	0.212	-0.047	0.162	-0.131	-0.092
PTN		24	62	236	225	undef	0.022	0.000	0.054	-0.092
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
FN1		6	301	590	582	0.190	0.133	0.091	undef	0.083
FOXO1		3	557	590	598	0.072	0.094	-0.021	-0.147	0.221
DCTN2		8	222	366	373	0.014	0.150	0.061	0.113	0.303
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
SDC2		4	440	590	585	-0.027	0.068	0.033	undef	0.215
GSTT1		15	111	1	32	0.148	0.107	-0.190	0.022	-0.064
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
GLI3		21	73	478	456	-0.138	0.080	-0.007	0.282	-0.018
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
AMH		10	167	366	362	0.103	0.056	0.113	-0.187	0.301
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
BUB1		6	301	590	582	0.246	-0.172	0.013	-0.007	0.170
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
ERG		9	196	179	195	-0.134	-0.026	0.235	-0.027	0.182
BUB3		5	360	478	476	0.133	-0.053	0.165	0.195	0.181
TAF1D		10	167	590	566	0.141	0.113	0.041	undef	0.059
COL4A4		6	301	83	105	0.102	0.155	-0.039	0.295	0.068
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
TM7SF2		2	743	590	616	-0.064	-0.016	0.022	0.106	-0.048
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
VPS41		1	1195	590	638	0.125	0.027	-0.127	0.176	0.168
LIN7C		10	167	590	566	0.166	0.088	0.118	-0.018	0.094
PLXNB2		4	440	590	585	-0.092	0.308	-0.136	undef	-0.062
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
CDK5R1		17	95	552	521	-0.150	0.038	-0.096	0.121	0.091
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
HIF1A		13	124	236	230	-0.098	0.224	-0.118	0.135	0.356
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
ARFGAP3		1	1195	590	638	0.079	0.307	-0.202	-0.058	0.009
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
PTPN4		2	743	318	346	-0.055	-0.110	-0.066	0.013	0.083
TIE1		18	86	366	357	-0.108	0.005	0.141	-0.108	0.252
KRT18		8	222	590	569	0.148	0.100	-0.083	0.024	-0.053
CD28		1	1195	590	638	-0.018	-0.128	0.005	-0.063	0.074

GO Enrichment output for subnetwork 6932 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide 3-kinase cascade	GO:0014065		4.582E-08	1.119E-04
induction of positive chemotaxis	GO:0050930		8.214E-08	1.003E-04
insulin-like growth factor receptor signaling pathway	GO:0048009		8.214E-08	6.689E-05
negative regulation of phosphorylation	GO:0042326		1.308E-07	7.991E-05
negative regulation of phosphorus metabolic process	GO:0010563		2.008E-07	9.812E-05
positive regulation of phosphorylation	GO:0042327		2.077E-07	8.455E-05
regulation of nitric-oxide synthase activity	GO:0050999		2.134E-07	7.448E-05
insulin receptor signaling pathway	GO:0008286		2.454E-07	7.495E-05
positive regulation of phosphorus metabolic process	GO:0010562		2.458E-07	6.673E-05
positive regulation of cellular catabolic process	GO:0031331		3.188E-07	7.789E-05
regulation of positive chemotaxis	GO:0050926		3.188E-07	7.081E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide 3-kinase cascade	GO:0014065		7.23E-08	1.74E-04
induction of positive chemotaxis	GO:0050930		1.296E-07	1.559E-04
insulin-like growth factor receptor signaling pathway	GO:0048009		1.296E-07	1.039E-04
negative regulation of phosphorylation	GO:0042326		2.296E-07	1.381E-04
regulation of nitric-oxide synthase activity	GO:0050999		3.363E-07	1.618E-04
insulin receptor signaling pathway	GO:0008286		3.521E-07	1.412E-04
negative regulation of phosphorus metabolic process	GO:0010563		3.521E-07	1.21E-04
positive regulation of phosphorylation	GO:0042327		3.74E-07	1.125E-04
positive regulation of phosphorus metabolic process	GO:0010562		4.443E-07	1.188E-04
positive regulation of cellular catabolic process	GO:0031331		5.022E-07	1.208E-04
regulation of positive chemotaxis	GO:0050926		5.022E-07	1.098E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
induction of positive chemotaxis	GO:0050930		2.394E-07	5.507E-04
insulin-like growth factor receptor signaling pathway	GO:0048009		2.394E-07	2.754E-04
phosphoinositide 3-kinase cascade	GO:0014065		2.394E-07	1.836E-04
negative regulation of phosphorylation	GO:0042326		7.957E-07	4.575E-04
insulin receptor signaling pathway	GO:0008286		9.988E-07	4.595E-04
regulation of nitric-oxide synthase activity	GO:0050999		1.108E-06	4.249E-04
regulation of positive chemotaxis	GO:0050926		1.108E-06	3.642E-04
negative regulation of phosphorus metabolic process	GO:0010563		1.241E-06	3.567E-04
positive regulation of cellular catabolic process	GO:0031331		1.653E-06	4.223E-04
regulation of angiogenesis	GO:0045765		2.108E-06	4.849E-04
positive regulation of catabolic process	GO:0009896		2.252E-06	4.71E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cell migration	GO:0030334		1.41E-09	2.599E-06
regulation of locomotion	GO:0040012		3.732E-09	3.439E-06
regulation of cell motion	GO:0051270		3.732E-09	2.293E-06
regulation of angiogenesis	GO:0045765		1.246E-07	5.743E-05
regulation of anatomical structure morphogenesis	GO:0022603		1.501E-07	5.531E-05
regulation of intracellular protein transport	GO:0033157		7.867E-07	2.416E-04
regulation of nucleocytoplasmic transport	GO:0046822		1.182E-06	3.113E-04
regulation of intracellular transport	GO:0032386		2.435E-06	5.609E-04
heart development	GO:0007507		2.605E-06	5.334E-04
positive regulation of glucose metabolic process	GO:0010907		3.576E-06	6.59E-04
positive regulation of viral reproduction	GO:0048524		3.576E-06	5.991E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
induction of positive chemotaxis	GO:0050930		2.394E-07	5.507E-04
insulin-like growth factor receptor signaling pathway	GO:0048009		2.394E-07	2.754E-04
phosphoinositide 3-kinase cascade	GO:0014065		2.394E-07	1.836E-04
negative regulation of phosphorylation	GO:0042326		7.957E-07	4.575E-04
insulin receptor signaling pathway	GO:0008286		9.988E-07	4.595E-04
regulation of nitric-oxide synthase activity	GO:0050999		1.108E-06	4.249E-04
regulation of positive chemotaxis	GO:0050926		1.108E-06	3.642E-04
negative regulation of phosphorus metabolic process	GO:0010563		1.241E-06	3.567E-04
positive regulation of cellular catabolic process	GO:0031331		1.653E-06	4.223E-04
regulation of angiogenesis	GO:0045765		2.108E-06	4.849E-04
positive regulation of catabolic process	GO:0009896		2.252E-06	4.71E-04