Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6721

score

Expression data for subnetwork 6721 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6721 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
EGF		12	140	638	620	-0.212	0.182	-0.276	-0.060	0.005
RET		7	256	366	376	0.098	0.063	-0.179	undef	-0.159
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
COL18A1		1	1195	764	795	-0.092	0.253	-0.078	undef	0.074
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
CTGF		32	40	318	290	-0.169	0.181	0.126	0.101	0.209
PLAU		12	140	179	192	0.187	0.153	0.141	0.072	0.192
ST18		16	104	236	227	-0.131	0.028	-0.088	0.186	0.151
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
RPS21		1	1195	764	795	0.183	-0.130	0.285	-0.037	-0.083
TFG		1	1195	764	795	-0.040	0.155	-0.191	0.045	0.238
TMPO		1	1195	764	795	-0.005	-0.236	0.054	0.027	0.122
AKT2		28	47	412	394	0.110	-0.118	-0.003	0.088	-0.092
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
RBP4		4	440	764	761	-0.059	-0.011	0.206	0.334	-0.045
MST1R		5	360	236	242	0.124	0.083	-0.212	-0.001	0.026
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
SERPINE1		8	222	179	200	0.160	0.200	0.056	0.070	0.030
ANGPT1		5	360	696	680	0.106	-0.167	0.084	-0.035	0.250
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
HIVEP1		6	301	764	758	-0.199	0.069	0.000	0.193	-0.042
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
KAT2B		13	124	318	316	0.102	-0.157	-0.091	0.136	-0.087
CHRND		3	557	318	341	0.114	-0.031	-0.047	0.154	-0.031
GSTT1		15	111	1	32	0.148	0.107	-0.190	0.022	-0.064
SRPX2		1	1195	764	795	0.202	0.196	0.033	0.129	0.295
SERPINB2		2	743	764	779	0.152	-0.030	0.034	-0.168	-0.096
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
DHX37		1	1195	764	795	0.141	-0.085	undef	undef	undef
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
CD9		13	124	525	503	0.036	-0.115	-0.109	0.281	-0.147
BRD7		23	66	457	437	-0.090	0.019	-0.188	undef	-0.086
INSM1		23	66	570	545	0.135	-0.184	-0.188	0.237	-0.032
MYCN		7	256	764	756	0.125	0.057	-0.003	-0.081	-0.084
ERRFI1		10	167	412	408	0.076	0.215	undef	-0.043	undef
TUBB3		7	256	764	756	0.078	0.130	0.073	0.207	-0.079
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
FOXO4		1	1195	764	795	-0.071	-0.128	-0.048	-0.145	-0.116
PLSCR1		10	167	412	408	0.202	-0.159	0.091	undef	-0.105
SOS1		5	360	478	476	-0.049	0.002	-0.007	0.160	-0.042
PLAUR		5	360	696	680	0.232	0.083	0.022	-0.030	0.108
GPC4		1	1195	764	795	0.173	0.232	-0.025	0.187	0.062
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
APTX		1	1195	764	795	0.106	-0.085	0.058	undef	0.004
LIN7C		10	167	590	566	0.166	0.088	0.118	-0.018	0.094
IRS4		32	40	236	224	0.115	-0.111	-0.088	0.096	0.142
NR2F1		25	59	83	92	-0.252	0.113	0.133	-0.116	0.207
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
GRB2		13	124	318	316	-0.040	-0.159	-0.036	-0.028	-0.024
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
BCL2A1		4	440	764	761	0.298	-0.120	-0.087	-0.199	-0.043
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
SERPINB5		1	1195	764	795	-0.014	0.062	0.092	undef	0.011
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6721 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		6.457E-10	1.577E-06
negative regulation of phosphorus metabolic process	GO:0010563		1.097E-09	1.34E-06
induction of apoptosis by intracellular signals	GO:0008629		3.632E-08	2.958E-05
induction of positive chemotaxis	GO:0050930		3.776E-08	2.306E-05
insulin receptor signaling pathway	GO:0008286		9.376E-08	4.581E-05
epidermal growth factor receptor signaling pathway	GO:0007173		1.138E-07	4.632E-05
regulation of positive chemotaxis	GO:0050926		1.469E-07	5.127E-05
interphase of mitotic cell cycle	GO:0051329		2.078E-07	6.345E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		2.951E-07	8.011E-05
cellular response to insulin stimulus	GO:0032869		5.616E-07	1.372E-04
single strand break repair	GO:0000012		7.321E-07	1.626E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		1.09E-09	2.622E-06
negative regulation of phosphorus metabolic process	GO:0010563		1.85E-09	2.226E-06
induction of positive chemotaxis	GO:0050930		5.377E-08	4.313E-05
induction of apoptosis by intracellular signals	GO:0008629		6.09E-08	3.663E-05
insulin receptor signaling pathway	GO:0008286		1.185E-07	5.703E-05
epidermal growth factor receptor signaling pathway	GO:0007173		1.449E-07	5.811E-05
regulation of positive chemotaxis	GO:0050926		2.09E-07	7.183E-05
interphase of mitotic cell cycle	GO:0051329		3.018E-07	9.077E-05
interphase	GO:0051325		3.736E-07	9.987E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		4.196E-07	1.01E-04
cell cycle arrest	GO:0007050		4.289E-07	9.382E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		4.233E-09	9.735E-06
negative regulation of phosphorus metabolic process	GO:0010563		7.353E-09	8.455E-06
induction of positive chemotaxis	GO:0050930		9.111E-08	6.985E-05
induction of apoptosis by intracellular signals	GO:0008629		1.479E-07	8.506E-05
insulin receptor signaling pathway	GO:0008286		3.029E-07	1.393E-04
regulation of positive chemotaxis	GO:0050926		4.235E-07	1.623E-04
epidermal growth factor receptor signaling pathway	GO:0007173		4.642E-07	1.525E-04
negative regulation of protein amino acid phosphorylation	GO:0001933		9.09E-07	2.613E-04
cell cycle arrest	GO:0007050		9.534E-07	2.436E-04
interphase of mitotic cell cycle	GO:0051329		9.534E-07	2.193E-04
interphase	GO:0051325		1.115E-06	2.332E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
wound healing	GO:0042060		2.363E-07	4.354E-04
insulin receptor signaling pathway	GO:0008286		1.887E-06	1.739E-03
coagulation	GO:0050817		2.756E-06	1.693E-03
hemostasis	GO:0007599		4.149E-06	1.912E-03
epidermal growth factor receptor signaling pathway	GO:0007173		4.172E-06	1.538E-03
ER overload response	GO:0006983		4.817E-06	1.48E-03
cellular response to insulin stimulus	GO:0032869		8.047E-06	2.119E-03
negative regulation of blood coagulation	GO:0030195		1.337E-05	3.08E-03
regulation of body fluid levels	GO:0050878		1.761E-05	3.607E-03
response to insulin stimulus	GO:0032868		1.964E-05	3.619E-03
negative regulation of multicellular organismal process	GO:0051241		2.123E-05	3.557E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		4.233E-09	9.735E-06
negative regulation of phosphorus metabolic process	GO:0010563		7.353E-09	8.455E-06
induction of positive chemotaxis	GO:0050930		9.111E-08	6.985E-05
induction of apoptosis by intracellular signals	GO:0008629		1.479E-07	8.506E-05
insulin receptor signaling pathway	GO:0008286		3.029E-07	1.393E-04
regulation of positive chemotaxis	GO:0050926		4.235E-07	1.623E-04
epidermal growth factor receptor signaling pathway	GO:0007173		4.642E-07	1.525E-04
negative regulation of protein amino acid phosphorylation	GO:0001933		9.09E-07	2.613E-04
cell cycle arrest	GO:0007050		9.534E-07	2.436E-04
interphase of mitotic cell cycle	GO:0051329		9.534E-07	2.193E-04
interphase	GO:0051325		1.115E-06	2.332E-04