Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6700

score

Expression data for subnetwork 6700 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6700 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
TEK		18	86	83	95	-0.149	-0.049	0.174	0.015	0.113
TRIP10		5	360	1034	1004	0.012	0.154	0.049	undef	0.144
KLC2		2	743	1055	1059	-0.029	0.017	0.185	undef	0.138
CIB2		18	86	590	564	0.228	-0.149	0.106	0.127	0.190
PTP4A3		9	196	412	411	0.137	-0.196	0.085	undef	-0.004
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
GRM5		15	111	179	191	0.094	-0.019	0.000	0.093	-0.093
CRKL		6	301	780	764	-0.023	0.056	0.271	-0.025	-0.008
HEY2		8	222	570	555	-0.045	-0.021	0.398	-0.024	-0.058
CDC42		26	52	179	177	0.047	0.242	-0.027	0.040	-0.042
PMAIP1		4	440	1055	1035	0.118	-0.105	0.057	undef	-0.047
SIVA1		3	557	1055	1043	0.157	-0.103	0.190	undef	-0.042
ARL11		1	1195	1055	1088	0.150	undef	undef	undef	undef
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
TRIP13		2	743	1055	1059	0.043	-0.199	-0.017	undef	-0.146
BAK1		1	1195	1055	1088	0.180	-0.118	-0.100	undef	-0.060
CIRBP		5	360	366	379	-0.069	0.208	0.110	0.049	-0.045
VDAC2		1	1195	1055	1088	0.185	-0.016	0.155	0.093	0.138
ATXN1		17	95	1	29	0.026	0.192	0.175	0.125	0.163
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
VDAC1		1	1195	1055	1088	0.020	0.122	-0.256	0.025	-0.110
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
LXN		1	1195	1055	1088	0.200	-0.057	0.038	-0.089	0.134
PDHB		13	124	525	503	0.056	0.017	0.197	-0.205	0.193
ENPP1		5	360	1055	1034	0.088	0.129	-0.026	undef	0.039
ARHGEF6		10	167	525	507	-0.068	-0.120	0.166	undef	-0.115
CLCA2		9	196	412	411	-0.176	0.243	-0.153	0.191	-0.000
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
GATA5		8	222	366	373	0.161	-0.031	undef	undef	undef
HOXB9		2	743	1055	1059	0.231	-0.101	undef	undef	undef
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
PSPH		20	81	366	356	0.240	-0.019	-0.102	0.358	0.025
PANK2		1	1195	1055	1088	0.028	0.133	0.029	undef	0.100
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
ARHGEF7		25	59	83	92	-0.074	-0.061	0.208	0.028	0.015
ITGAM		1	1195	1055	1088	0.197	-0.161	-0.050	-0.096	-0.077
GABBR1		5	360	780	767	-0.107	0.164	0.081	0.074	0.131
KLC1		4	440	1055	1035	0.071	0.189	0.204	0.139	0.132
PXMP2		1	1195	1055	1088	0.151	-0.113	0.227	undef	-0.043
GTF3A		2	743	1055	1059	0.138	-0.150	0.224	undef	-0.148
PFN2		11	148	141	143	0.014	-0.001	0.286	-0.002	-0.056
FOXG1		6	301	727	716	0.136	-0.156	-0.126	-0.013	-0.068
ABL1		13	124	727	699	-0.152	0.200	0.108	undef	-0.059
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
MAP4K5		1	1195	1055	1088	0.103	0.202	0.028	-0.007	0.061
GPRIN2		16	104	179	190	0.084	0.078	0.012	0.054	0.114
AMH		10	167	366	362	0.103	0.056	0.113	-0.187	0.301
PAK2		26	52	179	177	0.014	0.161	0.081	-0.044	0.062
BNIP3		11	148	236	232	0.193	0.071	0.102	0.119	0.285
ARHGAP1		6	301	179	205	-0.167	0.297	0.001	-0.032	0.251
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
GRIN2A		12	140	179	192	-0.113	-0.068	0.162	0.125	undef
ERRFI1		10	167	412	408	0.076	0.215	undef	-0.043	undef
CAV2		1	1195	1055	1088	-0.013	0.165	0.065	-0.028	0.101
WNK2		7	256	1	47	-0.127	0.029	undef	0.201	undef
HES1		4	440	570	565	0.115	0.157	0.010	0.214	-0.106
PLSCR1		10	167	412	408	0.202	-0.159	0.091	undef	-0.105
ZC4H2		17	95	570	546	0.065	0.061	0.304	-0.072	0.059
SYBU		3	557	1055	1043	0.049	0.010	-0.088	0.166	0.008
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
CD80		4	440	1055	1035	0.081	-0.199	-0.136	0.034	-0.078
R3HDM2		2	743	1055	1059	-0.085	-0.001	undef	undef	undef
MGMT		5	360	366	379	0.184	-0.022	0.201	undef	0.196
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
PTPRC		9	196	83	99	-0.031	-0.204	-0.050	-0.179	-0.068
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
HTT		14	117	141	140	-0.016	-0.015	0.075	0.092	-0.093
BCL2A1		4	440	764	761	0.298	-0.120	-0.087	-0.199	-0.043
PKN3		18	86	179	187	-0.181	0.009	undef	0.239	undef
CDH5		2	743	1055	1059	-0.159	0.023	0.180	undef	0.033
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
TIE1		18	86	366	357	-0.108	0.005	0.141	-0.108	0.252
PLD1		17	95	1	29	0.132	0.033	-0.158	-0.062	0.123
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
CDH2		10	167	727	702	0.169	0.109	-0.016	0.123	0.155
GOLGB1		3	557	983	979	0.104	0.352	0.044	0.079	0.175

GO Enrichment output for subnetwork 6700 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of phosphorylation	GO:0042326		7.171E-09	1.752E-05
regulation of mitochondrial membrane permeability	GO:0046902		7.64E-09	9.333E-06
negative regulation of phosphorus metabolic process	GO:0010563		1.214E-08	9.885E-06
negative regulation of protein amino acid phosphorylation	GO:0001933		1.817E-08	1.11E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		5.296E-08	2.587E-05
gland development	GO:0048732		1.19E-07	4.847E-05
induction of positive chemotaxis	GO:0050930		1.888E-07	6.588E-05
negative regulation of protein kinase activity	GO:0006469		2.783E-07	8.499E-05
negative regulation of kinase activity	GO:0033673		3.076E-07	8.349E-05
regulation of insulin receptor signaling pathway	GO:0046626		3.13E-07	7.647E-05
induction of apoptosis by intracellular signals	GO:0008629		3.886E-07	8.63E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of mitochondrial membrane permeability	GO:0046902		8.834E-09	2.125E-05
negative regulation of phosphorylation	GO:0042326		8.855E-09	1.065E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.498E-08	1.202E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		2.172E-08	1.306E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		6.12E-08	2.945E-05
gland development	GO:0048732		1.194E-07	4.789E-05
induction of positive chemotaxis	GO:0050930		2.181E-07	7.496E-05
negative regulation of protein kinase activity	GO:0006469		2.873E-07	8.642E-05
negative regulation of kinase activity	GO:0033673		3.186E-07	8.516E-05
regulation of insulin receptor signaling pathway	GO:0046626		3.616E-07	8.7E-05
negative regulation of transferase activity	GO:0051348		4.735E-07	1.036E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of mitochondrial membrane permeability	GO:0046902		2.194E-08	5.045E-05
negative regulation of phosphorylation	GO:0042326		2.53E-08	2.91E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		4.316E-08	3.309E-05
negative regulation of phosphorus metabolic process	GO:0010563		4.379E-08	2.518E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		1.516E-07	6.973E-05
induction of positive chemotaxis	GO:0050930		3.012E-07	1.155E-04
negative regulation of protein kinase activity	GO:0006469		4.165E-07	1.368E-04
negative regulation of kinase activity	GO:0033673		4.704E-07	1.352E-04
regulation of insulin receptor signaling pathway	GO:0046626		5.388E-07	1.377E-04
negative regulation of transferase activity	GO:0051348		6.687E-07	1.538E-04
regulation of positive chemotaxis	GO:0050926		1.393E-06	2.913E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of MAP kinase activity	GO:0043405		3.407E-08	6.28E-05
regulation of cell migration	GO:0030334		6.126E-08	5.645E-05
gland development	GO:0048732		8.191E-08	5.032E-05
positive regulation of MAP kinase activity	GO:0043406		8.191E-08	3.774E-05
regulation of locomotion	GO:0040012		1.432E-07	5.278E-05
regulation of cell motion	GO:0051270		1.432E-07	4.398E-05
positive regulation of transferase activity	GO:0051347		3.343E-07	8.8E-05
defense response to virus	GO:0051607		4.149E-07	9.559E-05
regulation of membrane potential	GO:0042391		1.295E-06	2.651E-04
protein amino acid autophosphorylation	GO:0046777		2.113E-06	3.894E-04
vasculogenesis	GO:0001570		2.3E-06	3.854E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of mitochondrial membrane permeability	GO:0046902		2.194E-08	5.045E-05
negative regulation of phosphorylation	GO:0042326		2.53E-08	2.91E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		4.316E-08	3.309E-05
negative regulation of phosphorus metabolic process	GO:0010563		4.379E-08	2.518E-05
negative regulation of insulin receptor signaling pathway	GO:0046627		1.516E-07	6.973E-05
induction of positive chemotaxis	GO:0050930		3.012E-07	1.155E-04
negative regulation of protein kinase activity	GO:0006469		4.165E-07	1.368E-04
negative regulation of kinase activity	GO:0033673		4.704E-07	1.352E-04
regulation of insulin receptor signaling pathway	GO:0046626		5.388E-07	1.377E-04
negative regulation of transferase activity	GO:0051348		6.687E-07	1.538E-04
regulation of positive chemotaxis	GO:0050926		1.393E-06	2.913E-04