Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6565

score

Expression data for subnetwork 6565 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6565 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
MAPK8		8	222	696	677	0.153	0.200	0.249	-0.066	0.138
RAD9A		2	743	1510	1502	0.033	-0.044	0.014	0.279	-0.051
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
DLC1		1	1195	1510	1530	-0.101	0.088	0.245	0.069	0.258
KAT5		1	1195	1510	1530	-0.190	-0.060	-0.026	-0.089	0.085
CSNK2A1		3	557	1510	1486	-0.215	0.029	undef	0.122	undef
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
APC		1	1195	1510	1530	-0.006	-0.004	0.067	-0.002	0.139
GIT1		2	743	1510	1502	-0.067	-0.099	-0.045	undef	-0.065
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
STMN1		4	440	1461	1437	0.168	-0.033	0.198	0.105	0.062
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
BCAT2		3	557	1510	1486	0.091	-0.103	-0.096	-0.128	-0.030
HEY2		8	222	570	555	-0.045	-0.021	0.398	-0.024	-0.058
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
SRI		7	256	614	601	0.270	-0.040	0.181	0.185	0.057
PSEN2		14	117	614	591	0.239	-0.068	-0.157	0.295	0.045
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
ZNF638		5	360	806	784	0.164	0.088	0.020	0.077	-0.045
GAPDH		11	148	141	143	0.159	-0.040	-0.053	0.088	0.029
AKT1		16	104	236	227	0.045	0.126	-0.099	undef	-0.168
GABPA		23	66	696	665	0.033	-0.183	0.066	0.141	-0.161
ASXL1		2	743	1510	1502	0.044	0.146	0.031	undef	0.041
ATF3		17	95	179	189	0.225	-0.021	0.000	undef	-0.039
PKMYT1		7	256	1510	1463	0.175	-0.143	0.046	0.105	-0.070
CAV1		2	743	1510	1502	-0.092	0.124	0.079	undef	0.119
FLNA		50	20	1	14	0.081	0.107	0.148	0.268	0.126
FANCE		1	1195	1510	1530	0.184	-0.209	0.079	undef	0.106
PDHB		13	124	525	503	0.056	0.017	0.197	-0.205	0.193
SMAD3		3	557	842	834	-0.176	0.063	0.239	-0.068	-0.012
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
NSL1		2	743	780	787	0.221	-0.079	0.288	undef	0.174
ARHGEF6		10	167	525	507	-0.068	-0.120	0.166	undef	-0.115
CCNT1		6	301	478	473	0.008	-0.028	0.162	0.007	-0.213
CLCA2		9	196	412	411	-0.176	0.243	-0.153	0.191	-0.000
CYTH4		1	1195	1510	1530	0.185	-0.105	0.025	-0.154	-0.052
PCDHA4		2	743	1510	1502	-0.060	0.110	-0.192	0.290	-0.029
SH2D3A		3	557	1510	1486	0.197	0.141	-0.106	-0.012	0.121
MAN1A2		1	1195	1510	1530	-0.087	0.152	0.133	0.118	0.070
ARHGEF7		25	59	83	92	-0.074	-0.061	0.208	0.028	0.015
DCTN2		8	222	366	373	0.014	0.150	0.061	0.113	0.303
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
KIAA1377		18	86	141	136	-0.095	0.116	undef	0.198	undef
PSEN1		10	167	366	362	-0.041	0.110	undef	0.083	undef
MAN1A1		1	1195	1510	1530	0.085	0.007	0.058	undef	0.069
CEP57		1	1195	1510	1530	0.091	0.097	0.219	0.094	0.027
CSF2RB		3	557	1492	1464	0.013	-0.196	-0.109	0.012	-0.141
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
GLI3		21	73	478	456	-0.138	0.080	-0.007	0.282	-0.018
PTEN		27	50	141	135	0.045	0.055	0.017	0.183	-0.041
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
GTF2F2		4	440	957	942	-0.059	-0.085	0.119	-0.004	-0.054
PTPN11		20	81	83	94	-0.152	0.014	0.066	0.304	0.089
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
BUB1		6	301	590	582	0.246	-0.172	0.013	-0.007	0.170
KANK2		1	1195	1510	1530	-0.104	0.122	0.099	0.094	0.218
MYCN		7	256	764	756	0.125	0.057	-0.003	-0.081	-0.084
MVP		1	1195	1510	1530	0.137	-0.213	-0.132	-0.003	0.096
SYK		2	743	1510	1502	0.106	-0.251	-0.134	0.017	0.163
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
CYTH1		1	1195	1510	1530	0.142	-0.319	0.134	0.024	0.105
HES1		4	440	570	565	0.115	0.157	0.010	0.214	-0.106
PLSCR1		10	167	412	408	0.202	-0.159	0.091	undef	-0.105
KRAS		2	743	1510	1502	-0.083	-0.127	-0.030	undef	0.182
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
TCF7L2		17	95	366	358	-0.021	0.143	0.280	undef	0.101
MAPK3		6	301	141	152	0.137	-0.102	-0.126	undef	-0.086
KPNA1		9	196	141	147	0.007	0.152	-0.083	0.073	0.086
NEK1		15	111	141	139	0.032	0.184	0.049	undef	0.135
PGK1		1	1195	1510	1530	0.059	0.095	0.115	0.143	0.119
HTT		14	117	141	140	-0.016	-0.015	0.075	0.092	-0.093
CEPT1		2	743	1510	1502	-0.208	0.038	0.194	0.163	0.205
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
EPO		4	440	1492	1461	0.109	0.086	-0.083	-0.048	0.155
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6565 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.032E-13	4.964E-10
Wnt receptor signaling pathway through beta-catenin	GO:0060070		4.755E-11	5.809E-08
cell cycle checkpoint	GO:0000075		6.968E-11	5.674E-08
regulation of protein export from nucleus	GO:0046825		3.231E-10	1.973E-07
organ growth	GO:0035265		3.231E-10	1.579E-07
regulation of intracellular protein transport	GO:0033157		4.673E-10	1.903E-07
regulation of nucleocytoplasmic transport	GO:0046822		1.009E-09	3.52E-07
regulation of protein localization	GO:0032880		1.621E-09	4.95E-07
positive regulation of hormone secretion	GO:0046887		2.666E-09	7.235E-07
DNA damage checkpoint	GO:0000077		4.094E-09	1E-06
regulation of intracellular transport	GO:0032386		5.98E-09	1.328E-06

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.214E-13	7.733E-10
Wnt receptor signaling pathway through beta-catenin	GO:0060070		2.829E-11	3.404E-08
cell cycle checkpoint	GO:0000075		7.867E-11	6.31E-08
regulation of protein export from nucleus	GO:0046825		4.031E-10	2.425E-07
organ growth	GO:0035265		4.031E-10	1.94E-07
regulation of intracellular protein transport	GO:0033157		6.563E-10	2.632E-07
regulation of nucleocytoplasmic transport	GO:0046822		1.415E-09	4.864E-07
regulation of protein localization	GO:0032880		2.438E-09	7.332E-07
positive regulation of hormone secretion	GO:0046887		3.461E-09	9.252E-07
DNA damage checkpoint	GO:0000077		3.553E-09	8.548E-07
DNA integrity checkpoint	GO:0031570		6.815E-09	1.491E-06

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of protein export from nucleus	GO:0046825		3.161E-10	7.27E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.284E-10	7.227E-07
regulation of intracellular protein transport	GO:0033157		6.44E-10	4.937E-07
organ growth	GO:0035265		1.098E-09	6.316E-07
regulation of nucleocytoplasmic transport	GO:0046822		3.064E-09	1.409E-06
regulation of protein localization	GO:0032880		4.224E-09	1.619E-06
cell cycle checkpoint	GO:0000075		5.154E-09	1.694E-06
regulation of intracellular transport	GO:0032386		1.11E-08	3.192E-06
negative regulation of peptide secretion	GO:0002792		3.03E-08	7.742E-06
glycolysis	GO:0006096		1.143E-07	2.63E-05
regulation of growth hormone secretion	GO:0060123		2.091E-07	4.373E-05

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		2.199E-08	4.053E-05
regulation of nucleocytoplasmic transport	GO:0046822		3.634E-08	3.348E-05
focal adhesion formation	GO:0048041		4.305E-08	2.645E-05
regulation of intracellular transport	GO:0032386		8.832E-08	4.07E-05
regulation of protein localization	GO:0032880		1.838E-07	6.776E-05
positive regulation of protein import into nucleus	GO:0042307		3.556E-07	1.092E-04
cell-substrate junction assembly	GO:0007044		5.894E-07	1.552E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		9.21E-07	2.122E-04
gland development	GO:0048732		1.512E-06	3.097E-04
positive regulation of MAP kinase activity	GO:0043406		1.512E-06	2.787E-04
regulation of protein transport	GO:0051223		2.427E-06	4.066E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of protein export from nucleus	GO:0046825		3.161E-10	7.27E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.284E-10	7.227E-07
regulation of intracellular protein transport	GO:0033157		6.44E-10	4.937E-07
organ growth	GO:0035265		1.098E-09	6.316E-07
regulation of nucleocytoplasmic transport	GO:0046822		3.064E-09	1.409E-06
regulation of protein localization	GO:0032880		4.224E-09	1.619E-06
cell cycle checkpoint	GO:0000075		5.154E-09	1.694E-06
regulation of intracellular transport	GO:0032386		1.11E-08	3.192E-06
negative regulation of peptide secretion	GO:0002792		3.03E-08	7.742E-06
glycolysis	GO:0006096		1.143E-07	2.63E-05
regulation of growth hormone secretion	GO:0060123		2.091E-07	4.373E-05