Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6541

score

Expression data for subnetwork 6541 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6541 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CCNE2		11	148	412	407	0.136	-0.178	0.241	undef	-0.055
ARHGAP26		21	73	457	438	-0.023	0.171	-0.222	0.015	-0.348
LMO7		2	743	1735	1721	-0.129	0.068	0.000	0.197	0.151
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
WASF1		7	256	1	47	0.162	-0.070	0.348	-0.037	0.130
SUMO2		22	69	366	345	0.117	0.062	0.294	0.141	-0.096
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
BCAT1		4	440	1735	1699	0.273	-0.134	0.161	-0.078	0.122
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
PDGFB		7	256	1165	1135	0.020	0.046	0.085	-0.049	0.338
PDGFRA		10	167	141	146	-0.035	0.008	0.118	0.107	0.119
GRM5		15	111	179	191	0.094	-0.019	0.000	0.093	-0.093
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
MMP7		1	1195	1735	1746	0.058	0.066	0.106	undef	0.009
SOCS1		3	557	1717	1689	0.074	-0.153	-0.177	-0.202	-0.100
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
SAP30L		1	1195	1735	1746	-0.025	0.193	0.057	undef	0.051
SOX11		5	360	1396	1378	-0.039	-0.073	-0.028	0.274	-0.104
PDGFRB		12	140	141	142	-0.094	0.224	0.127	0.153	0.189
GAPDH		11	148	141	143	0.159	-0.040	-0.053	0.088	0.029
PARP1		29	45	83	84	-0.036	-0.162	-0.089	0.238	0.012
MMP1		11	148	366	360	0.192	0.014	0.036	0.044	0.260
FEZ1		8	222	141	149	0.047	-0.020	0.154	0.165	-0.128
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
BNIPL		2	743	1735	1721	0.144	0.072	undef	undef	undef
SOCS3		2	743	1717	1701	0.201	-0.110	0.064	0.023	-0.138
NEDD8		4	440	1650	1612	0.250	-0.085	0.251	0.211	-0.073
HTATSF1		1	1195	1735	1746	0.071	0.008	0.247	-0.090	0.070
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
FOSL1		11	148	366	360	-0.040	0.164	0.010	0.128	0.005
POU3F2		17	95	928	891	0.135	0.114	0.155	0.253	0.040
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
MCM10		5	360	179	208	0.178	-0.245	0.015	undef	-0.063
CDKN1C		1	1195	1735	1746	-0.041	0.147	0.019	0.038	0.074
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
SUMO1		5	360	1034	1004	0.245	-0.007	0.144	0.083	0.118
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
CUL5		3	557	1735	1718	0.051	0.187	0.221	0.017	0.216
SMC3		5	360	614	612	0.105	-0.096	0.238	0.137	0.047
SLC9A3R1		3	557	1735	1718	0.004	0.017	0.017	0.096	-0.110
GPRIN2		16	104	179	190	0.084	0.078	0.012	0.054	0.114
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
GRIN2A		12	140	179	192	-0.113	-0.068	0.162	0.125	undef
ZNF350		1	1195	1735	1746	-0.100	0.055	0.019	undef	-0.084
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
MDFI		17	95	236	226	-0.075	-0.001	0.177	0.169	-0.112
SRGAP2		1	1195	1735	1746	0.078	0.100	0.261	0.036	0.152
TNFAIP6		3	557	1735	1718	0.102	0.234	0.077	-0.002	-0.073
STAG1		3	557	991	982	-0.035	0.153	0.310	0.048	0.208
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
MYBL2		4	440	1604	1572	0.031	-0.220	0.034	-0.034	0.006
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
CYFIP2		1	1195	1735	1746	0.001	0.062	-0.039	undef	0.126
FANCA		9	196	1	44	0.120	-0.188	0.106	-0.127	-0.053
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
XK		18	86	179	187	0.154	-0.000	0.067	-0.123	-0.040
NR2F1		25	59	83	92	-0.252	0.113	0.133	-0.116	0.207
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
HOMER3		2	743	525	547	0.160	0.124	-0.083	0.072	0.094
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
NEK1		15	111	141	139	0.032	0.184	0.049	undef	0.135
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
KPNA1		9	196	141	147	0.007	0.152	-0.083	0.073	0.086
PKN3		18	86	179	187	-0.181	0.009	undef	0.239	undef
FAT1		2	743	1735	1721	0.071	0.269	0.087	0.186	0.094
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
CUL2		7	256	842	816	0.124	-0.192	-0.090	-0.035	0.166
ACAN		5	360	412	416	0.156	0.132	-0.024	-0.171	-0.083
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
DYNLL2		2	743	1735	1721	0.068	-0.127	undef	undef	undef
PLD1		17	95	1	29	0.132	0.033	-0.158	-0.062	0.123
TBL1X		4	440	1735	1699	-0.044	0.017	-0.192	0.198	-0.009
FHL1		14	117	614	591	-0.041	0.104	0.301	undef	0.266
ESR1		4	440	179	209	0.026	-0.002	-0.053	-0.149	-0.062
YWHAH		2	743	1323	1313	-0.082	-0.046	0.001	-0.094	-0.008
AHR		8	222	478	461	0.180	0.067	0.091	-0.182	-0.129
HIPK3		9	196	1461	1417	0.069	0.005	-0.027	undef	0.175
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
PKIA		11	148	780	759	-0.120	0.085	0.249	0.164	0.044
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
STOM		1	1195	1735	1746	-0.066	0.023	0.223	-0.143	0.085

GO Enrichment output for subnetwork 6541 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.081E-13	2.64E-10
G1/S transition of mitotic cell cycle	GO:0000082		4.358E-13	5.324E-10
protein sumoylation	GO:0016925		1.609E-11	1.311E-08
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.414E-10	8.633E-08
negative regulation of insulin receptor signaling pathway	GO:0046627		2.515E-10	1.229E-07
regulation of insulin receptor signaling pathway	GO:0046626		2.97E-09	1.209E-06
negative regulation of phosphorylation	GO:0042326		9.546E-09	3.332E-06
negative regulation of phosphorus metabolic process	GO:0010563		1.615E-08	4.932E-06
induction of apoptosis by intracellular signals	GO:0008629		1.85E-08	5.023E-06
positive regulation of cell migration	GO:0030335		1.14E-07	2.784E-05
negative regulation of DNA binding	GO:0043392		1.293E-07	2.871E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.705E-13	4.103E-10
interphase	GO:0051325		2.578E-13	3.101E-10
G1/S transition of mitotic cell cycle	GO:0000082		8.663E-13	6.948E-10
protein sumoylation	GO:0016925		2.461E-11	1.48E-08
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.612E-10	1.257E-07
negative regulation of insulin receptor signaling pathway	GO:0046627		3.588E-10	1.439E-07
regulation of insulin receptor signaling pathway	GO:0046626		4.232E-09	1.455E-06
negative regulation of phosphorylation	GO:0042326		1.451E-08	4.365E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.453E-08	6.558E-06
induction of apoptosis by intracellular signals	GO:0008629		2.991E-08	7.197E-06
positive regulation of cell migration	GO:0030335		1.621E-07	3.547E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		7.051E-12	1.622E-08
interphase of mitotic cell cycle	GO:0051329		3.218E-11	3.7E-08
interphase	GO:0051325		4.251E-11	3.259E-08
protein sumoylation	GO:0016925		1.413E-10	8.125E-08
negative regulation of insulin receptor signaling pathway	GO:0046627		1.549E-09	7.126E-07
regulation of insulin receptor signaling pathway	GO:0046626		9.152E-09	3.508E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.632E-08	8.647E-06
negative regulation of phosphorylation	GO:0042326		6.128E-08	1.762E-05
induction of apoptosis by intracellular signals	GO:0008629		9.151E-08	2.339E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.058E-07	2.434E-05
positive regulation of cell migration	GO:0030335		5.203E-07	1.088E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell migration	GO:0030335		2.32E-08	4.276E-05
positive regulation of cell motion	GO:0051272		4.185E-08	3.857E-05
protein amino acid autophosphorylation	GO:0046777		1.351E-07	8.298E-05
positive regulation of MAP kinase activity	GO:0043406		2.179E-07	1.004E-04
interphase of mitotic cell cycle	GO:0051329		2.895E-07	1.067E-04
platelet-derived growth factor receptor signaling pathway	GO:0048008		7.285E-07	2.238E-04
peptidyl-amino acid modification	GO:0018193		8.065E-07	2.123E-04
G1/S transition of mitotic cell cycle	GO:0000082		9.188E-07	2.117E-04
regulation of protein amino acid phosphorylation	GO:0001932		1.017E-06	2.083E-04
cell-substrate junction assembly	GO:0007044		1.206E-06	2.223E-04
regulation of MAP kinase activity	GO:0043405		1.753E-06	2.937E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		7.051E-12	1.622E-08
interphase of mitotic cell cycle	GO:0051329		3.218E-11	3.7E-08
interphase	GO:0051325		4.251E-11	3.259E-08
protein sumoylation	GO:0016925		1.413E-10	8.125E-08
negative regulation of insulin receptor signaling pathway	GO:0046627		1.549E-09	7.126E-07
regulation of insulin receptor signaling pathway	GO:0046626		9.152E-09	3.508E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.632E-08	8.647E-06
negative regulation of phosphorylation	GO:0042326		6.128E-08	1.762E-05
induction of apoptosis by intracellular signals	GO:0008629		9.151E-08	2.339E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.058E-07	2.434E-05
positive regulation of cell migration	GO:0030335		5.203E-07	1.088E-04