Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6474

score

Expression data for subnetwork 6474 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6474 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
CASP3		11	148	141	143	0.234	-0.032	-0.142	-0.097	-0.084
CYLD		1	1195	1873	1882	-0.083	-0.137	-0.250	undef	-0.011
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
NQO1		21	73	366	354	-0.115	0.069	-0.189	0.321	0.118
POLR1A		6	301	457	452	-0.193	-0.066	undef	0.093	undef
MDM4		9	196	141	147	-0.016	0.004	0.164	0.107	0.105
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
SMARCA4		4	440	1364	1330	0.080	0.202	-0.071	-0.050	-0.116
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
PPM1B		1	1195	1873	1882	0.241	-0.038	-0.019	-0.124	-0.045
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
CDH1		37	32	296	278	-0.227	0.187	-0.236	0.137	-0.024
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
UBE2D1		1	1195	1873	1882	0.105	0.045	0.121	0.056	-0.066
ETV1		10	167	1	40	0.046	0.054	-0.065	0.014	0.141
CDK6		16	104	318	314	-0.229	0.107	-0.028	-0.118	0.104
SOX11		5	360	1396	1378	-0.039	-0.073	-0.028	0.274	-0.104
TAF5		5	360	478	476	0.166	-0.131	0.125	undef	0.076
AKT2		28	47	412	394	0.110	-0.118	-0.003	0.088	-0.092
CDC6		3	557	570	572	0.198	-0.053	0.038	-0.202	0.095
ACTN1		18	86	318	313	0.016	0.347	0.068	0.100	0.314
MAP3K6		2	743	638	650	-0.129	0.287	-0.015	0.248	0.066
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
FERMT1		1	1195	1873	1882	0.111	0.083	-0.052	-0.186	-0.017
PTGS2		2	743	366	395	0.091	-0.073	0.250	-0.177	0.152
CAMK2D		2	743	638	650	0.085	-0.149	0.000	undef	undef
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
SH3RF1		6	301	1222	1194	0.144	0.238	undef	undef	undef
RBL1		21	73	1	27	0.078	undef	undef	0.051	undef
CCNA1		33	37	412	393	0.174	0.092	0.078	0.055	-0.098
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
ACTN4		14	117	318	315	0.035	0.180	undef	-0.048	undef
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
MID1		1	1195	1873	1882	-0.047	0.156	0.068	undef	0.166
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298
HDAC2		13	124	318	316	0.079	-0.094	0.148	0.089	0.037
COPG		5	360	570	562	0.004	0.080	-0.158	undef	0.280
POU3F2		17	95	928	891	0.135	0.114	0.155	0.253	0.040
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
FN1		6	301	590	582	0.190	0.133	0.091	undef	0.083
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
KAT2B		13	124	318	316	0.102	-0.157	-0.091	0.136	-0.087
ATF7		28	47	179	175	0.085	0.115	-0.088	0.172	-0.092
DLGAP4		7	256	727	714	-0.029	0.180	-0.201	0.135	-0.043
FOXA3		12	140	318	322	0.192	0.289	undef	-0.171	undef
KIF23		4	440	957	942	0.168	-0.063	0.162	undef	0.033
RACGAP1		4	440	1222	1205	0.283	-0.164	0.073	0.055	0.188
IKBKAP		10	167	412	408	0.089	0.184	0.142	0.105	-0.017
PKN1		5	360	1674	1634	0.150	-0.143	-0.011	0.084	-0.002
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
GLI3		21	73	478	456	-0.138	0.080	-0.007	0.282	-0.018
SUV39H2		8	222	318	325	0.150	-0.097	-0.057	undef	0.028
STK3		4	440	141	165	0.254	0.007	0.106	0.326	0.198
PPIG		8	222	648	631	-0.116	0.024	0.221	-0.065	0.101
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
BNIP3		11	148	236	232	0.193	0.071	0.102	0.119	0.285
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
CCND2		5	360	1492	1453	0.022	-0.011	-0.072	-0.153	-0.029
ERRFI1		10	167	412	408	0.076	0.215	undef	-0.043	undef
CAMK2G		1	1195	1873	1882	0.191	-0.004	0.103	0.045	-0.072
TLE2		4	440	806	790	0.010	0.052	0.202	undef	0.093
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
ITGA5		26	52	179	177	0.031	0.192	0.125	0.133	0.202
ILK		4	440	1413	1390	-0.020	0.195	0.076	0.130	0.086
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
POLR3A		8	222	296	287	-0.010	-0.032	undef	0.091	undef
NMT2		7	256	906	876	0.077	-0.296	0.134	-0.124	0.217
NR2F1		25	59	83	92	-0.252	0.113	0.133	-0.116	0.207
MAPK3		6	301	141	152	0.137	-0.102	-0.126	undef	-0.086
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
PPP1R13L		2	743	478	490	0.032	0.351	-0.104	0.042	0.173
AHR		8	222	478	461	0.180	0.067	0.091	-0.182	-0.129
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
IGF2		14	117	570	553	-0.022	0.172	0.145	0.087	0.116

GO Enrichment output for subnetwork 6474 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
apoptotic mitochondrial changes	GO:0008637		1.893E-09	4.625E-06
apoptotic nuclear changes	GO:0030262		3.607E-09	4.406E-06
regulation of mitochondrial membrane permeability	GO:0046902		7.106E-09	5.787E-06
release of cytochrome c from mitochondria	GO:0001836		1.661E-08	1.014E-05
DNA fragmentation involved in apoptosis	GO:0006309		5.055E-08	2.47E-05
cell-substrate junction assembly	GO:0007044		6.965E-08	2.836E-05
cell structure disassembly during apoptosis	GO:0006921		1.629E-07	5.686E-05
nucleus organization	GO:0006997		1.691E-07	5.163E-05
interphase of mitotic cell cycle	GO:0051329		1.85E-07	5.022E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		2.913E-07	7.116E-05
DNA catabolic process. endonucleolytic	GO:0000737		3.352E-07	7.444E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
apoptotic mitochondrial changes	GO:0008637		3.12E-09	7.507E-06
apoptotic nuclear changes	GO:0030262		5.939E-09	7.144E-06
regulation of mitochondrial membrane permeability	GO:0046902		9.967E-09	7.994E-06
release of cytochrome c from mitochondria	GO:0001836		2.524E-08	1.518E-05
DNA fragmentation involved in apoptosis	GO:0006309		7.673E-08	3.692E-05
cell-substrate junction assembly	GO:0007044		1.057E-07	4.237E-05
nucleus organization	GO:0006997		2.009E-07	6.904E-05
cell structure disassembly during apoptosis	GO:0006921		2.468E-07	7.424E-05
interphase of mitotic cell cycle	GO:0051329		2.731E-07	7.3E-05
interphase	GO:0051325		3.475E-07	8.36E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		4.077E-07	8.917E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
apoptotic mitochondrial changes	GO:0008637		4.814E-09	1.107E-05
apoptotic nuclear changes	GO:0030262		6.988E-09	8.036E-06
regulation of mitochondrial membrane permeability	GO:0046902		2.194E-08	1.682E-05
release of cytochrome c from mitochondria	GO:0001836		6.67E-08	3.835E-05
DNA fragmentation involved in apoptosis	GO:0006309		9.939E-08	4.572E-05
cell-substrate junction assembly	GO:0007044		2.021E-07	7.747E-05
nucleus organization	GO:0006997		2.594E-07	8.524E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.012E-07	8.661E-05
cell structure disassembly during apoptosis	GO:0006921		3.747E-07	9.577E-05
interphase of mitotic cell cycle	GO:0051329		5.381E-07	1.238E-04
interphase	GO:0051325		6.429E-07	1.344E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
release of cytochrome c from mitochondria	GO:0001836		3.329E-07	6.135E-04
peptidyl-amino acid modification	GO:0018193		5.708E-07	5.259E-04
branching involved in ureteric bud morphogenesis	GO:0001658		5.954E-07	3.658E-04
apoptotic mitochondrial changes	GO:0008637		9.86E-07	4.543E-04
cell-substrate junction assembly	GO:0007044		9.86E-07	3.634E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		1.539E-06	4.729E-04
apoptotic nuclear changes	GO:0030262		1.539E-06	4.053E-04
hindbrain development	GO:0030902		1.539E-06	3.547E-04
regulation of intracellular protein transport	GO:0033157		1.819E-06	3.724E-04
regulation of nucleocytoplasmic transport	GO:0046822		2.727E-06	5.026E-04
positive regulation of MAP kinase activity	GO:0043406		3.224E-06	5.401E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
apoptotic mitochondrial changes	GO:0008637		4.814E-09	1.107E-05
apoptotic nuclear changes	GO:0030262		6.988E-09	8.036E-06
regulation of mitochondrial membrane permeability	GO:0046902		2.194E-08	1.682E-05
release of cytochrome c from mitochondria	GO:0001836		6.67E-08	3.835E-05
DNA fragmentation involved in apoptosis	GO:0006309		9.939E-08	4.572E-05
cell-substrate junction assembly	GO:0007044		2.021E-07	7.747E-05
nucleus organization	GO:0006997		2.594E-07	8.524E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.012E-07	8.661E-05
cell structure disassembly during apoptosis	GO:0006921		3.747E-07	9.577E-05
interphase of mitotic cell cycle	GO:0051329		5.381E-07	1.238E-04
interphase	GO:0051325		6.429E-07	1.344E-04