Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6448

score

Expression data for subnetwork 6448 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6448 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
PAX6		22	69	318	312	0.259	-0.003	0.112	undef	0.168
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
BPTF		4	440	318	337	-0.098	0.159	0.132	undef	0.030
NDRG1		6	301	658	646	0.222	0.143	-0.040	-0.018	0.242
FAM129B		1	1195	1967	1973	0.101	0.243	undef	undef	undef
ATF7		28	47	179	175	0.085	0.115	-0.088	0.172	-0.092
BIK		1	1195	1967	1973	-0.097	0.133	-0.179	-0.092	-0.071
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
PAWR		1	1195	1967	1973	0.173	0.224	0.034	0.124	0.137
ID4		35	34	236	223	-0.179	0.137	0.241	undef	0.036
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
PDGFRA		10	167	141	146	-0.035	0.008	0.118	0.107	0.119
HOXB2		33	37	318	289	0.024	-0.143	0.076	0.247	-0.184
CCNE1		4	440	1083	1067	0.245	-0.141	-0.077	undef	-0.018
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
SPP1		26	52	83	91	0.130	0.119	0.184	0.204	0.153
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
APLP1		8	222	727	703	0.284	0.043	-0.105	-0.121	-0.190
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
PMAIP1		4	440	1055	1035	0.118	-0.105	0.057	undef	-0.047
SIVA1		3	557	1055	1043	0.157	-0.103	0.190	undef	-0.042
PIN1		24	62	179	181	0.194	0.040	-0.040	0.065	-0.048
CCND3		1	1195	1967	1973	0.053	0.056	0.015	-0.123	-0.171
AMH		10	167	366	362	0.103	0.056	0.113	-0.187	0.301
MITF		5	360	696	680	0.027	0.032	0.065	0.145	0.183
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
STXBP1		5	360	1629	1587	-0.027	0.078	0.180	0.143	0.043
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
MTHFD1		2	743	1604	1588	0.139	-0.266	0.078	0.066	0.124
CABYR		1	1195	1967	1973	0.015	-0.003	-0.046	undef	-0.088
ATF4		1	1195	1967	1973	0.065	0.136	-0.041	0.041	-0.032
PARP1		29	45	83	84	-0.036	-0.162	-0.089	0.238	0.012
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
EYA3		9	196	318	324	-0.034	0.053	-0.020	0.188	-0.142
TEP1		2	743	1967	1945	0.111	0.126	-0.039	0.182	0.134
FABP5		3	557	1534	1516	0.152	-0.177	0.225	-0.118	0.141
ATF3		17	95	179	189	0.225	-0.021	0.000	undef	-0.039
PKMYT1		7	256	1510	1463	0.175	-0.143	0.046	0.105	-0.070
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
DAPK3		1	1195	1967	1973	0.092	0.145	0.010	undef	0.184
TCF7L2		17	95	366	358	-0.021	0.143	0.280	undef	0.101
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
TFF1		7	256	957	928	0.106	0.022	0.088	-0.033	-0.244
ID3		9	196	658	637	0.072	-0.006	0.192	-0.023	0.057
TPR		11	148	727	701	-0.130	0.120	-0.036	-0.085	0.156
KEAP1		2	743	1604	1588	0.218	0.011	-0.155	-0.205	-0.031
HIF1A		13	124	236	230	-0.098	0.224	-0.118	0.135	0.356
BCL2A1		4	440	764	761	0.298	-0.120	-0.087	-0.199	-0.043
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
TUBB2B		13	124	141	141	-0.036	0.304	0.045	0.187	0.139
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
TIE1		18	86	366	357	-0.108	0.005	0.141	-0.108	0.252
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6448 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		4.589E-13	1.121E-09
interphase of mitotic cell cycle	GO:0051329		1.993E-11	2.435E-08
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.025E-09	4.906E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.465E-08	1.506E-05
induction of positive chemotaxis	GO:0050930		4.422E-08	2.161E-05
negative regulation of phosphorylation	GO:0042326		6.067E-08	2.47E-05
negative regulation of phosphorus metabolic process	GO:0010563		9.323E-08	3.254E-05
Wnt receptor signaling pathway through beta-catenin	GO:0060070		1.15E-07	3.512E-05
regulation of positive chemotaxis	GO:0050926		1.719E-07	4.667E-05
regulation of hormone metabolic process	GO:0032350		1.719E-07	4.201E-05
positive regulation of cell migration	GO:0030335		2.175E-07	4.831E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		8.463E-13	2.036E-09
interphase of mitotic cell cycle	GO:0051329		2.83E-11	3.404E-08
interphase	GO:0051325		3.875E-11	3.108E-08
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.691E-09	5.829E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.267E-08	1.572E-05
induction of positive chemotaxis	GO:0050930		5.86E-08	2.35E-05
negative regulation of phosphorylation	GO:0042326		8.585E-08	2.951E-05
Wnt receptor signaling pathway through beta-catenin	GO:0060070		9.731E-08	2.926E-05
negative regulation of phosphorus metabolic process	GO:0010563		1.319E-07	3.525E-05
regulation of positive chemotaxis	GO:0050926		2.277E-07	5.478E-05
regulation of hormone metabolic process	GO:0032350		2.277E-07	4.98E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		3.724E-12	8.565E-09
interphase of mitotic cell cycle	GO:0051329		1.052E-10	1.209E-07
interphase	GO:0051325		1.327E-10	1.018E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.293E-08	1.318E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.407E-08	2.027E-05
induction of positive chemotaxis	GO:0050930		8.772E-08	3.363E-05
negative regulation of phosphorylation	GO:0042326		2.299E-07	7.554E-05
negative regulation of phosphorus metabolic process	GO:0010563		3.595E-07	1.034E-04
regulation of positive chemotaxis	GO:0050926		4.078E-07	1.042E-04
positive regulation of cell migration	GO:0030335		6.218E-07	1.43E-04
positive regulation of cell motion	GO:0051272		1.094E-06	2.287E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cell migration	GO:0030334		5.078E-09	9.358E-06
regulation of locomotion	GO:0040012		1.204E-08	1.11E-05
regulation of cell motion	GO:0051270		1.204E-08	7.399E-06
positive regulation of cell migration	GO:0030335		4.478E-08	2.063E-05
positive regulation of cell motion	GO:0051272		7.405E-08	2.73E-05
regulation of mitotic cell cycle	GO:0007346		1.073E-07	3.296E-05
regulation of anatomical structure morphogenesis	GO:0022603		4.973E-07	1.309E-04
peptidyl-amino acid modification	GO:0018193		9.392E-07	2.164E-04
lung development	GO:0030324		1.952E-06	3.997E-04
pigmentation	GO:0043473		2.208E-06	4.07E-04
respiratory tube development	GO:0030323		2.556E-06	4.282E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		3.724E-12	8.565E-09
interphase of mitotic cell cycle	GO:0051329		1.052E-10	1.209E-07
interphase	GO:0051325		1.327E-10	1.018E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.293E-08	1.318E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.407E-08	2.027E-05
induction of positive chemotaxis	GO:0050930		8.772E-08	3.363E-05
negative regulation of phosphorylation	GO:0042326		2.299E-07	7.554E-05
negative regulation of phosphorus metabolic process	GO:0010563		3.595E-07	1.034E-04
regulation of positive chemotaxis	GO:0050926		4.078E-07	1.042E-04
positive regulation of cell migration	GO:0030335		6.218E-07	1.43E-04
positive regulation of cell motion	GO:0051272		1.094E-06	2.287E-04