Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6421
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7559 | 3.390e-03 | 5.460e-04 | 7.654e-01 | 1.417e-06 |
|---|
| Loi | 0.2297 | 8.126e-02 | 1.162e-02 | 4.306e-01 | 4.067e-04 |
|---|
| Schmidt | 0.6726 | 0.000e+00 | 0.000e+00 | 4.577e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7905 | 0.000e+00 | 0.000e+00 | 3.500e-03 | 0.000e+00 |
|---|
| Wang | 0.2608 | 2.786e-03 | 4.479e-02 | 4.009e-01 | 5.002e-05 |
|---|
Expression data for subnetwork 6421 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6421 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| EP300 |   | 113 | 4 | 1 | 4 | -0.149 | 0.087 | 0.102 | 0.052 | 0.025 |
|---|
| NCOR2 | | 32 | 40 | 318 | 290 | -0.096 | 0.211 | -0.163 | 0.158 | 0.114 |
|---|
| KAT2B | | 13 | 124 | 318 | 316 | 0.102 | -0.157 | -0.091 | 0.136 | -0.087 |
|---|
| EGR1 | | 39 | 29 | 1 | 18 | -0.184 | 0.259 | 0.130 | 0.018 | 0.122 |
|---|
| NQO1 | | 21 | 73 | 366 | 354 | -0.115 | 0.069 | -0.189 | 0.321 | 0.118 |
|---|
| TP53 | | 85 | 7 | 1 | 6 | -0.167 | 0.148 | -0.027 | 0.252 | 0.147 |
|---|
| ERBB2 | | 141 | 1 | 1 | 1 | -0.103 | 0.092 | -0.090 | 0.267 | 0.046 |
|---|
| CDKN1A | | 110 | 5 | 1 | 5 | 0.064 | 0.254 | 0.030 | undef | 0.082 |
|---|
| PRKCA | | 63 | 15 | 1 | 10 | -0.016 | -0.088 | 0.174 | 0.095 | 0.005 |
|---|
| BARD1 | | 69 | 12 | 141 | 132 | 0.179 | -0.165 | 0.086 | 0.245 | -0.104 |
|---|
| NAB1 | | 1 | 1195 | 2052 | 2057 | -0.035 | -0.056 | 0.119 | -0.236 | 0.167 |
|---|
| GRM5 | | 15 | 111 | 179 | 191 | 0.094 | -0.019 | 0.000 | 0.093 | -0.093 |
|---|
| GRM1 | | 2 | 743 | 1034 | 1039 | -0.140 | -0.030 | 0.000 | 0.093 | -0.105 |
|---|
| JUN | | 26 | 52 | 179 | 177 | 0.200 | 0.051 | 0.220 | undef | 0.200 |
|---|
| EN1 | | 10 | 167 | 179 | 194 | 0.196 | 0.024 | 0.011 | -0.016 | 0.102 |
|---|
| FGFR3 | | 9 | 196 | 179 | 195 | 0.160 | 0.071 | 0.018 | -0.050 | -0.111 |
|---|
| IRF4 | | 2 | 743 | 882 | 892 | 0.153 | -0.250 | -0.172 | -0.076 | -0.103 |
|---|
| CTGF | | 32 | 40 | 318 | 290 | -0.169 | 0.181 | 0.126 | 0.101 | 0.209 |
|---|
| SHC3 | | 3 | 557 | 1165 | 1151 | -0.101 | -0.039 | -0.050 | -0.040 | -0.009 |
|---|
| CD9 | | 13 | 124 | 525 | 503 | 0.036 | -0.115 | -0.109 | 0.281 | -0.147 |
|---|
| TFAP2A | | 3 | 557 | 83 | 117 | -0.070 | 0.146 | -0.095 | -0.152 | -0.009 |
|---|
| BRD7 | | 23 | 66 | 457 | 437 | -0.090 | 0.019 | -0.188 | undef | -0.086 |
|---|
| WT1 | | 33 | 37 | 1 | 21 | 0.254 | -0.039 | 0.036 | undef | 0.172 |
|---|
| ST18 | | 16 | 104 | 236 | 227 | -0.131 | 0.028 | -0.088 | 0.186 | 0.151 |
|---|
| TWIST1 | | 50 | 20 | 1 | 14 | 0.044 | 0.194 | 0.061 | undef | 0.219 |
|---|
| NOTCH3 | | 5 | 360 | 806 | 784 | -0.063 | 0.115 | 0.136 | undef | -0.082 |
|---|
| TADA2A | | 4 | 440 | 478 | 479 | 0.135 | -0.054 | 0.204 | -0.115 | -0.127 |
|---|
| SP1 | | 72 | 10 | 83 | 77 | 0.222 | -0.254 | 0.239 | 0.020 | 0.082 |
|---|
| SAP30 | | 2 | 743 | 1938 | 1922 | 0.186 | 0.083 | 0.153 | -0.047 | -0.184 |
|---|
| FGFR4 | | 21 | 73 | 179 | 183 | -0.011 | 0.188 | -0.089 | -0.018 | -0.049 |
|---|
| TAT | | 11 | 148 | 83 | 97 | -0.113 | 0.030 | -0.182 | 0.037 | -0.074 |
|---|
| VAV3 | | 9 | 196 | 638 | 622 | 0.015 | 0.071 | -0.245 | 0.148 | 0.038 |
|---|
| DNASE1 | | 4 | 440 | 590 | 585 | 0.165 | -0.301 | -0.088 | -0.078 | 0.114 |
|---|
| AKT2 | | 28 | 47 | 412 | 394 | 0.110 | -0.118 | -0.003 | 0.088 | -0.092 |
|---|
| CDK4 | | 4 | 440 | 913 | 904 | -0.092 | -0.201 | 0.091 | -0.043 | -0.017 |
|---|
| FHL2 | | 21 | 73 | 658 | 630 | 0.143 | 0.239 | -0.033 | 0.107 | 0.294 |
|---|
| CUX1 | | 6 | 301 | 1203 | 1169 | -0.042 | 0.256 | -0.121 | 0.105 | 0.040 |
|---|
| ATF3 | | 17 | 95 | 179 | 189 | 0.225 | -0.021 | 0.000 | undef | -0.039 |
|---|
| PRDM1 | | 2 | 743 | 882 | 892 | 0.114 | -0.101 | undef | -0.251 | undef |
|---|
| VEGFA | | 68 | 14 | 83 | 78 | 0.090 | 0.200 | 0.030 | 0.095 | 0.148 |
|---|
| IRS4 | | 32 | 40 | 236 | 224 | 0.115 | -0.111 | -0.088 | 0.096 | 0.142 |
|---|
| CDK1 | | 63 | 15 | 83 | 79 | 0.265 | -0.195 | 0.106 | 0.088 | 0.031 |
|---|
| XK | | 18 | 86 | 179 | 187 | 0.154 | -0.000 | 0.067 | -0.123 | -0.040 |
|---|
| EGFR | | 117 | 3 | 1 | 3 | -0.195 | 0.240 | -0.205 | -0.187 | 0.065 |
|---|
| FGFR1 | | 26 | 52 | 638 | 615 | -0.036 | 0.200 | 0.087 | undef | -0.015 |
|---|
| MAP1B | | 69 | 12 | 1 | 9 | -0.123 | 0.263 | -0.107 | 0.304 | 0.100 |
|---|
| INSR | | 96 | 6 | 236 | 221 | 0.063 | 0.173 | 0.135 | -0.014 | -0.072 |
|---|
| PAFAH1B3 | | 2 | 743 | 1928 | 1911 | 0.172 | -0.018 | -0.104 | 0.060 | -0.024 |
|---|
| HIF1A | | 13 | 124 | 236 | 230 | -0.098 | 0.224 | -0.118 | 0.135 | 0.356 |
|---|
| GRB7 | | 58 | 18 | 1 | 12 | 0.021 | 0.115 | -0.072 | 0.229 | 0.129 |
|---|
| CCNA1 | | 33 | 37 | 412 | 393 | 0.174 | 0.092 | 0.078 | 0.055 | -0.098 |
|---|
| TLE1 | | 4 | 440 | 727 | 723 | 0.183 | 0.050 | 0.030 | 0.080 | 0.055 |
|---|
| HDAC1 | | 4 | 440 | 318 | 337 | 0.122 | -0.020 | 0.050 | -0.035 | -0.172 |
|---|
| GSK3B | | 79 | 8 | 179 | 169 | -0.130 | 0.292 | -0.129 | 0.291 | 0.057 |
|---|
| KLF5 | | 76 | 9 | 1 | 7 | 0.077 | 0.117 | -0.007 | -0.110 | -0.006 |
|---|
| NRP1 | | 8 | 222 | 1222 | 1186 | -0.043 | 0.025 | 0.201 | 0.029 | 0.071 |
|---|
| HSPB1 | | 22 | 69 | 1 | 25 | 0.053 | 0.169 | 0.017 | 0.179 | 0.161 |
|---|
| AHR | | 8 | 222 | 478 | 461 | 0.180 | 0.067 | 0.091 | -0.182 | -0.129 |
|---|
| ARNT | | 4 | 440 | 1203 | 1184 | 0.221 | -0.023 | 0.140 | 0.122 | -0.124 |
|---|
| CDKN2A | | 60 | 17 | 1 | 11 | 0.263 | -0.113 | 0.111 | undef | -0.105 |
|---|
| PKIA | | 11 | 148 | 780 | 759 | -0.120 | 0.085 | 0.249 | 0.164 | 0.044 |
|---|
| TGFB1I1 | | 49 | 22 | 1 | 16 | -0.105 | 0.229 | 0.143 | 0.195 | 0.298 |
|---|
| HDAC2 | | 13 | 124 | 318 | 316 | 0.079 | -0.094 | 0.148 | 0.089 | 0.037 |
|---|
GO Enrichment output for subnetwork 6421 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| inner ear receptor cell differentiation | GO:0060113 |  | 7.157E-12 | 1.748E-08 |
|---|
| mechanoreceptor differentiation | GO:0042490 | | 1.441E-11 | 1.76E-08 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.233E-09 | 1.004E-06 |
|---|
| lung development | GO:0030324 | | 1.315E-09 | 8.029E-07 |
|---|
| respiratory tube development | GO:0030323 | | 1.859E-09 | 9.085E-07 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.093E-09 | 8.523E-07 |
|---|
| respiratory system development | GO:0060541 | | 2.323E-09 | 8.107E-07 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 2.342E-09 | 7.151E-07 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 4.269E-09 | 1.159E-06 |
|---|
| inner ear development | GO:0048839 | | 5.724E-09 | 1.398E-06 |
|---|
| auditory receptor cell differentiation | GO:0042491 | | 1.275E-08 | 2.831E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| inner ear receptor cell differentiation | GO:0060113 | | 4.002E-12 | 9.628E-09 |
|---|
| mechanoreceptor differentiation | GO:0042490 | | 8.733E-12 | 1.051E-08 |
|---|
| lung development | GO:0030324 | | 1.288E-09 | 1.033E-06 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.466E-09 | 8.817E-07 |
|---|
| respiratory tube development | GO:0030323 | | 1.841E-09 | 8.86E-07 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.921E-09 | 7.704E-07 |
|---|
| respiratory system development | GO:0060541 | | 2.316E-09 | 7.959E-07 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.488E-09 | 7.481E-07 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 2.64E-09 | 7.057E-07 |
|---|
| inner ear development | GO:0048839 | | 4.567E-09 | 1.099E-06 |
|---|
| auditory receptor cell differentiation | GO:0042491 | | 1.046E-08 | 2.287E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 8.046E-09 | 1.851E-05 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.015E-08 | 1.167E-05 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.067E-08 | 8.179E-06 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.396E-08 | 8.027E-06 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 3.029E-08 | 1.394E-05 |
|---|
| inner ear receptor cell differentiation | GO:0060113 | | 5.525E-08 | 2.118E-05 |
|---|
| mechanoreceptor differentiation | GO:0042490 | | 1.072E-07 | 3.522E-05 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 1.399E-07 | 4.022E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 1.399E-07 | 3.575E-05 |
|---|
| positive regulation of glucose metabolic process | GO:0010907 | | 2.505E-07 | 5.761E-05 |
|---|
| regulation of glycolysis | GO:0006110 | | 2.505E-07 | 5.237E-05 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 5.733E-07 | 1.057E-03 |
|---|
| negative regulation of transcription from RNA polymerase II promoter | GO:0000122 | | 1.973E-06 | 1.818E-03 |
|---|
| positive regulation of catabolic process | GO:0009896 | | 2.071E-06 | 1.272E-03 |
|---|
| positive regulation of glucose metabolic process | GO:0010907 | | 2.098E-06 | 9.667E-04 |
|---|
| positive regulation of cell migration | GO:0030335 | | 2.175E-06 | 8.017E-04 |
|---|
| lung development | GO:0030324 | | 2.504E-06 | 7.69E-04 |
|---|
| respiratory tube development | GO:0030323 | | 3.277E-06 | 8.628E-04 |
|---|
| respiratory system development | GO:0060541 | | 3.277E-06 | 7.55E-04 |
|---|
| positive regulation of cell motion | GO:0051272 | | 3.277E-06 | 6.711E-04 |
|---|
| ER overload response | GO:0006983 | | 4.178E-06 | 7.701E-04 |
|---|
| regulation of cellular carbohydrate catabolic process | GO:0043471 | | 4.178E-06 | 7E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 8.046E-09 | 1.851E-05 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.015E-08 | 1.167E-05 |
|---|
| fibroblast growth factor receptor signaling pathway | GO:0008543 | | 1.067E-08 | 8.179E-06 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.396E-08 | 8.027E-06 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 3.029E-08 | 1.394E-05 |
|---|
| inner ear receptor cell differentiation | GO:0060113 | | 5.525E-08 | 2.118E-05 |
|---|
| mechanoreceptor differentiation | GO:0042490 | | 1.072E-07 | 3.522E-05 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 1.399E-07 | 4.022E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 1.399E-07 | 3.575E-05 |
|---|
| positive regulation of glucose metabolic process | GO:0010907 | | 2.505E-07 | 5.761E-05 |
|---|
| regulation of glycolysis | GO:0006110 | | 2.505E-07 | 5.237E-05 |
|---|
