Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 890-10-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1386	1.349e-02	2.558e-02	5.374e-02
IPC-NIBC-129	0.1708	7.231e-02	4.197e-02	2.985e-01
Ivshina_GPL96-GPL97	0.2289	5.485e-02	4.089e-02	4.430e-01
Loi_GPL570	0.2433	1.384e-01	1.152e-01	4.906e-01
Loi_GPL96-GPL97	0.2350	4.223e-02	5.287e-03	4.682e-01
Pawitan_GPL96-GPL97	0.3403	8.389e-02	3.633e-02	4.267e-01
Schmidt	0.1754	1.761e-02	2.445e-02	9.902e-02
Sotiriou	0.2907	3.195e-02	2.235e-02	2.336e-01
Zhang	0.2692	5.436e-03	8.079e-03	2.407e-02

Expression data for subnetwork 890-10-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 890-10-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
ccna2		1	57	89	92	0.065	0.183	0.157	0.177	0.133	0.276	0.264	0.176	0.173
ccnb1		25	3	46	33	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.167
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 890-10-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.236E-06	5.142E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		2.349E-06	2.701E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.711E-06	2.078E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.711E-06	1.559E-03
positive regulation of ligase activity	GO:0051351		3.249E-06	1.495E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		3.543E-06	1.358E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.263E-03
regulation of ligase activity	GO:0051340		4.182E-06	1.202E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.299E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.579E-07	1.363E-03
G2/M transition checkpoint	GO:0031576		5.697E-07	6.959E-04
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		5.832E-07	4.749E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		6.636E-07	4.053E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		6.636E-07	3.242E-04
positive regulation of ligase activity	GO:0051351		8.134E-07	3.312E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		8.791E-07	3.068E-04
regulation of ligase activity	GO:0051340		1.059E-06	3.233E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.44E-06	3.909E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.595E-06	3.895E-04
interphase of mitotic cell cycle	GO:0051329		1.687E-06	3.746E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		9.158E-07	2.203E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.573E-07	1.152E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.089E-06	8.735E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.089E-06	6.551E-04
positive regulation of ligase activity	GO:0051351		1.335E-06	6.424E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		1.443E-06	5.785E-04
regulation of ligase activity	GO:0051340		1.737E-06	5.97E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	6.679E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		2.362E-06	6.315E-04
interphase of mitotic cell cycle	GO:0051329		2.519E-06	6.061E-04
interphase	GO:0051325		2.767E-06	6.052E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.579E-07	1.363E-03
G2/M transition checkpoint	GO:0031576		5.697E-07	6.959E-04
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		5.832E-07	4.749E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		6.636E-07	4.053E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		6.636E-07	3.242E-04
positive regulation of ligase activity	GO:0051351		8.134E-07	3.312E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		8.791E-07	3.068E-04
regulation of ligase activity	GO:0051340		1.059E-06	3.233E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.44E-06	3.909E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.595E-06	3.895E-04
interphase of mitotic cell cycle	GO:0051329		1.687E-06	3.746E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		9.158E-07	2.203E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.573E-07	1.152E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.089E-06	8.735E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.089E-06	6.551E-04
positive regulation of ligase activity	GO:0051351		1.335E-06	6.424E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		1.443E-06	5.785E-04
regulation of ligase activity	GO:0051340		1.737E-06	5.97E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	6.679E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		2.362E-06	6.315E-04
interphase of mitotic cell cycle	GO:0051329		2.519E-06	6.061E-04
interphase	GO:0051325		2.767E-06	6.052E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		9.158E-07	2.203E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.573E-07	1.152E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.089E-06	8.735E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.089E-06	6.551E-04
positive regulation of ligase activity	GO:0051351		1.335E-06	6.424E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		1.443E-06	5.785E-04
regulation of ligase activity	GO:0051340		1.737E-06	5.97E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	6.679E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		2.362E-06	6.315E-04
interphase of mitotic cell cycle	GO:0051329		2.519E-06	6.061E-04
interphase	GO:0051325		2.767E-06	6.052E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.236E-06	5.142E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		2.349E-06	2.701E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.711E-06	2.078E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.711E-06	1.559E-03
positive regulation of ligase activity	GO:0051351		3.249E-06	1.495E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		3.543E-06	1.358E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.263E-03
regulation of ligase activity	GO:0051340		4.182E-06	1.202E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.299E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.236E-06	5.142E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		2.349E-06	2.701E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.711E-06	2.078E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.711E-06	1.559E-03
positive regulation of ligase activity	GO:0051351		3.249E-06	1.495E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		3.543E-06	1.358E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.263E-03
regulation of ligase activity	GO:0051340		4.182E-06	1.202E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.299E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.236E-06	5.142E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		2.349E-06	2.701E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.711E-06	2.078E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.711E-06	1.559E-03
positive regulation of ligase activity	GO:0051351		3.249E-06	1.495E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		3.543E-06	1.358E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.263E-03
regulation of ligase activity	GO:0051340		4.182E-06	1.202E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.299E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03