Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 8812-10-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1893	1.806e-02	3.316e-02	7.015e-02
IPC-NIBC-129	0.1975	1.970e-01	1.398e-01	6.829e-01
Ivshina_GPL96-GPL97	0.2148	3.224e-02	2.171e-02	2.950e-01
Loi_GPL570	0.1613	8.065e-02	5.627e-02	3.340e-01
Loi_GPL96-GPL97	0.1663	7.080e-03	3.300e-05	6.455e-02
Pawitan_GPL96-GPL97	0.3650	8.599e-02	3.759e-02	4.341e-01
Schmidt	0.2147	2.860e-02	3.903e-02	1.587e-01
Sotiriou	0.2600	1.022e-01	7.532e-02	5.648e-01
Zhang	0.2669	3.601e-03	5.344e-03	1.683e-02

Expression data for subnetwork 8812-10-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 8812-10-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
cks1b		1	57	127	130	0.095	0.222	0.107	-0.008	0.107	0.277	0.185	0.132	0.128
ccnb2		5	13	58	45	0.164	0.176	0.204	0.123	0.172	0.366	0.240	0.169	0.211
ccnk		1	57	127	130	0.059	0.082	0.068	-0.043	0.028	0.157	0.222	0.093	-0.087
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
cdk2		1	57	127	130	0.102	0.241	0.092	0.008	0.100	0.236	0.154	0.122	0.046
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 8812-10-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.332E-08	3.063E-05
traversing start control point of mitotic cell cycle	GO:0007089		2.942E-06	3.384E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	4.734E-03
regulation of vascular permeability	GO:0043114		8.231E-06	4.733E-03
icosanoid secretion	GO:0032309		8.231E-06	3.786E-03
acid secretion	GO:0046717		1.058E-05	4.055E-03
thymus development	GO:0048538		1.058E-05	3.476E-03
interphase of mitotic cell cycle	GO:0051329		1.345E-05	3.868E-03
interphase	GO:0051325		1.442E-05	3.684E-03
T cell homeostasis	GO:0043029		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.913E-09	7.116E-06
traversing start control point of mitotic cell cycle	GO:0007089		1.566E-06	1.913E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	2.38E-03
regulation of vascular permeability	GO:0043114		2.922E-06	1.785E-03
icosanoid secretion	GO:0032309		3.757E-06	1.835E-03
interphase of mitotic cell cycle	GO:0051329		4.391E-06	1.788E-03
acid secretion	GO:0046717		5.737E-06	2.002E-03
thymus development	GO:0048538		5.737E-06	1.752E-03
T cell homeostasis	GO:0043029		6.883E-06	1.868E-03
lymphocyte homeostasis	GO:0002260		1.094E-05	2.674E-03
long-chain fatty acid transport	GO:0015909		1.594E-05	3.54E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.766E-09	9.061E-06
traversing start control point of mitotic cell cycle	GO:0007089		1.212E-06	1.458E-03
regulation of vascular permeability	GO:0043114		3.392E-06	2.72E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.392E-06	2.04E-03
icosanoid secretion	GO:0032309		4.36E-06	2.098E-03
interphase of mitotic cell cycle	GO:0051329		4.926E-06	1.975E-03
interphase	GO:0051325		5.409E-06	1.859E-03
acid secretion	GO:0046717		6.658E-06	2.003E-03
thymus development	GO:0048538		6.658E-06	1.78E-03
T cell homeostasis	GO:0043029		7.988E-06	1.922E-03
lymphocyte homeostasis	GO:0002260		1.27E-05	2.778E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.913E-09	7.116E-06
traversing start control point of mitotic cell cycle	GO:0007089		1.566E-06	1.913E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	2.38E-03
regulation of vascular permeability	GO:0043114		2.922E-06	1.785E-03
icosanoid secretion	GO:0032309		3.757E-06	1.835E-03
interphase of mitotic cell cycle	GO:0051329		4.391E-06	1.788E-03
acid secretion	GO:0046717		5.737E-06	2.002E-03
thymus development	GO:0048538		5.737E-06	1.752E-03
T cell homeostasis	GO:0043029		6.883E-06	1.868E-03
lymphocyte homeostasis	GO:0002260		1.094E-05	2.674E-03
long-chain fatty acid transport	GO:0015909		1.594E-05	3.54E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.766E-09	9.061E-06
traversing start control point of mitotic cell cycle	GO:0007089		1.212E-06	1.458E-03
regulation of vascular permeability	GO:0043114		3.392E-06	2.72E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.392E-06	2.04E-03
icosanoid secretion	GO:0032309		4.36E-06	2.098E-03
interphase of mitotic cell cycle	GO:0051329		4.926E-06	1.975E-03
interphase	GO:0051325		5.409E-06	1.859E-03
acid secretion	GO:0046717		6.658E-06	2.003E-03
thymus development	GO:0048538		6.658E-06	1.78E-03
T cell homeostasis	GO:0043029		7.988E-06	1.922E-03
lymphocyte homeostasis	GO:0002260		1.27E-05	2.778E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.766E-09	9.061E-06
traversing start control point of mitotic cell cycle	GO:0007089		1.212E-06	1.458E-03
regulation of vascular permeability	GO:0043114		3.392E-06	2.72E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.392E-06	2.04E-03
icosanoid secretion	GO:0032309		4.36E-06	2.098E-03
interphase of mitotic cell cycle	GO:0051329		4.926E-06	1.975E-03
interphase	GO:0051325		5.409E-06	1.859E-03
acid secretion	GO:0046717		6.658E-06	2.003E-03
thymus development	GO:0048538		6.658E-06	1.78E-03
T cell homeostasis	GO:0043029		7.988E-06	1.922E-03
lymphocyte homeostasis	GO:0002260		1.27E-05	2.778E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.332E-08	3.063E-05
traversing start control point of mitotic cell cycle	GO:0007089		2.942E-06	3.384E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	4.734E-03
regulation of vascular permeability	GO:0043114		8.231E-06	4.733E-03
icosanoid secretion	GO:0032309		8.231E-06	3.786E-03
acid secretion	GO:0046717		1.058E-05	4.055E-03
thymus development	GO:0048538		1.058E-05	3.476E-03
interphase of mitotic cell cycle	GO:0051329		1.345E-05	3.868E-03
interphase	GO:0051325		1.442E-05	3.684E-03
T cell homeostasis	GO:0043029		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.332E-08	3.063E-05
traversing start control point of mitotic cell cycle	GO:0007089		2.942E-06	3.384E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	4.734E-03
regulation of vascular permeability	GO:0043114		8.231E-06	4.733E-03
icosanoid secretion	GO:0032309		8.231E-06	3.786E-03
acid secretion	GO:0046717		1.058E-05	4.055E-03
thymus development	GO:0048538		1.058E-05	3.476E-03
interphase of mitotic cell cycle	GO:0051329		1.345E-05	3.868E-03
interphase	GO:0051325		1.442E-05	3.684E-03
T cell homeostasis	GO:0043029		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.332E-08	3.063E-05
traversing start control point of mitotic cell cycle	GO:0007089		2.942E-06	3.384E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	4.734E-03
regulation of vascular permeability	GO:0043114		8.231E-06	4.733E-03
icosanoid secretion	GO:0032309		8.231E-06	3.786E-03
acid secretion	GO:0046717		1.058E-05	4.055E-03
thymus development	GO:0048538		1.058E-05	3.476E-03
interphase of mitotic cell cycle	GO:0051329		1.345E-05	3.868E-03
interphase	GO:0051325		1.442E-05	3.684E-03
T cell homeostasis	GO:0043029		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03