Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5203-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1720 | 1.320e-02 | 2.508e-02 | 5.267e-02 |
|---|
| IPC-NIBC-129 | 0.1716 | 8.014e-02 | 4.747e-02 | 3.303e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2299 | 5.401e-02 | 4.015e-02 | 4.382e-01 |
|---|
| Loi_GPL570 | 0.2351 | 1.808e-01 | 1.628e-01 | 5.810e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2053 | 1.319e-02 | 2.050e-04 | 1.445e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3112 | 1.484e-01 | 7.954e-02 | 6.124e-01 |
|---|
| Schmidt | 0.1555 | 1.515e-02 | 2.115e-02 | 8.509e-02 |
|---|
| Sotiriou | 0.3002 | 5.313e-02 | 3.793e-02 | 3.570e-01 |
|---|
| Zhang | 0.2162 | 8.825e-03 | 1.312e-02 | 3.651e-02 |
|---|
Expression data for subnetwork 5203-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5203-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| pfdn4 |   | 1 | 57 | 150 | 153 | 0.015 | 0.118 | 0.089 | 0.208 | 0.102 | 0.049 | 0.156 | 0.074 | 0.146 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| tubb | | 3 | 25 | 34 | 32 | 0.107 | 0.221 | 0.070 | 0.090 | 0.095 | 0.185 | 0.139 | 0.202 | -0.142 |
|---|
| ccnb1 | | 25 | 3 | 46 | 33 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.167 |
|---|
| brca1 | | 3 | 25 | 111 | 98 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | 0.113 | 0.077 | 0.168 | 0.064 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 5203-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 |  | 1.286E-12 | 2.958E-09 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 3.234E-11 | 3.72E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 8.464E-11 | 6.489E-08 |
|---|
| cell killing | GO:0001906 | | 2.564E-10 | 1.474E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.393E-09 | 2.021E-06 |
|---|
| spindle organization | GO:0007051 | | 6.968E-09 | 2.671E-06 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 1.398E-07 | 4.592E-05 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 2.424E-07 | 6.97E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.947E-06 | 1.52E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 8.917E-06 | 2.051E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 8.917E-06 | 1.864E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.026E-13 | 2.507E-10 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 4.305E-12 | 5.258E-09 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.014E-11 | 8.258E-09 |
|---|
| cell killing | GO:0001906 | | 2.794E-11 | 1.707E-08 |
|---|
| spindle organization | GO:0007051 | | 7.331E-10 | 3.582E-07 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 1.369E-08 | 5.574E-06 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 2.452E-08 | 8.556E-06 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.661E-06 | 5.072E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.491E-06 | 6.762E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.491E-06 | 6.085E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.997E-06 | 6.657E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.991E-13 | 4.79E-10 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 8.349E-12 | 1.004E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.967E-11 | 1.577E-08 |
|---|
| cell killing | GO:0001906 | | 5.419E-11 | 3.26E-08 |
|---|
| spindle organization | GO:0007051 | | 1.421E-09 | 6.836E-07 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 2.487E-08 | 9.971E-06 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 4.49E-08 | 1.543E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.313E-06 | 6.957E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 3.469E-06 | 9.274E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 3.469E-06 | 8.346E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.855E-06 | 1.062E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.026E-13 | 2.507E-10 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 4.305E-12 | 5.258E-09 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.014E-11 | 8.258E-09 |
|---|
| cell killing | GO:0001906 | | 2.794E-11 | 1.707E-08 |
|---|
| spindle organization | GO:0007051 | | 7.331E-10 | 3.582E-07 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 1.369E-08 | 5.574E-06 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 2.452E-08 | 8.556E-06 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.661E-06 | 5.072E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.491E-06 | 6.762E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.491E-06 | 6.085E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.997E-06 | 6.657E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.991E-13 | 4.79E-10 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 8.349E-12 | 1.004E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.967E-11 | 1.577E-08 |
|---|
| cell killing | GO:0001906 | | 5.419E-11 | 3.26E-08 |
|---|
| spindle organization | GO:0007051 | | 1.421E-09 | 6.836E-07 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 2.487E-08 | 9.971E-06 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 4.49E-08 | 1.543E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.313E-06 | 6.957E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 3.469E-06 | 9.274E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 3.469E-06 | 8.346E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.855E-06 | 1.062E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.991E-13 | 4.79E-10 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 8.349E-12 | 1.004E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.967E-11 | 1.577E-08 |
|---|
| cell killing | GO:0001906 | | 5.419E-11 | 3.26E-08 |
|---|
| spindle organization | GO:0007051 | | 1.421E-09 | 6.836E-07 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 2.487E-08 | 9.971E-06 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 4.49E-08 | 1.543E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.313E-06 | 6.957E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 3.469E-06 | 9.274E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 3.469E-06 | 8.346E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.855E-06 | 1.062E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.286E-12 | 2.958E-09 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 3.234E-11 | 3.72E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 8.464E-11 | 6.489E-08 |
|---|
| cell killing | GO:0001906 | | 2.564E-10 | 1.474E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.393E-09 | 2.021E-06 |
|---|
| spindle organization | GO:0007051 | | 6.968E-09 | 2.671E-06 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 1.398E-07 | 4.592E-05 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 2.424E-07 | 6.97E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.947E-06 | 1.52E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 8.917E-06 | 2.051E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 8.917E-06 | 1.864E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.286E-12 | 2.958E-09 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 3.234E-11 | 3.72E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 8.464E-11 | 6.489E-08 |
|---|
| cell killing | GO:0001906 | | 2.564E-10 | 1.474E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.393E-09 | 2.021E-06 |
|---|
| spindle organization | GO:0007051 | | 6.968E-09 | 2.671E-06 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 1.398E-07 | 4.592E-05 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 2.424E-07 | 6.97E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.947E-06 | 1.52E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 8.917E-06 | 2.051E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 8.917E-06 | 1.864E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.286E-12 | 2.958E-09 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 3.234E-11 | 3.72E-08 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 8.464E-11 | 6.489E-08 |
|---|
| cell killing | GO:0001906 | | 2.564E-10 | 1.474E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.393E-09 | 2.021E-06 |
|---|
| spindle organization | GO:0007051 | | 6.968E-09 | 2.671E-06 |
|---|
| lymphocyte mediated immunity | GO:0002449 | | 1.398E-07 | 4.592E-05 |
|---|
| leukocyte mediated immunity | GO:0002443 | | 2.424E-07 | 6.97E-05 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.947E-06 | 1.52E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 8.917E-06 | 2.051E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 8.917E-06 | 1.864E-03 |
|---|
