Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 23759-2-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1853	1.051e-02	2.047e-02	4.265e-02
IPC-NIBC-129	0.1565	9.377e-02	5.732e-02	3.833e-01
Ivshina_GPL96-GPL97	0.2408	7.264e-02	5.703e-02	5.338e-01
Loi_GPL570	0.2224	9.774e-02	7.275e-02	3.852e-01
Loi_GPL96-GPL97	0.1959	8.189e-03	5.100e-05	7.869e-02
Pawitan_GPL96-GPL97	0.2942	9.577e-02	4.360e-02	4.672e-01
Schmidt	0.2008	1.129e-02	1.591e-02	6.277e-02
Sotiriou	0.3186	6.233e-02	4.482e-02	4.032e-01
Zhang	0.2570	1.171e-02	1.738e-02	4.644e-02

Expression data for subnetwork 23759-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 23759-2-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
tsc1		11	6	1	3	0.049	0.012	-0.055	0.072	0.055	-0.196	0.006	0.010	-0.007
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
ppil2		1	57	104	109	0.086	0.094	-0.042	0.087	0.111	0.094	-0.027	0.087	-0.002
birc5		8	11	37	28	0.101	0.216	0.190	0.134	0.223	0.202	0.236	0.241	0.205
hsp90aa1		6	12	37	29	0.116	0.030	0.164	0.076	0.119	0.169	0.069	0.102	-0.011
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 23759-2-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		8.885E-06	0.0204359
positive regulation of Rho GTPase activity	GO:0032321		8.885E-06	0.01021795
positive regulation of cell cycle	GO:0045787		1.057E-05	8.102E-03
protein refolding	GO:0042026		1.332E-05	7.659E-03
spindle checkpoint	GO:0031577		1.332E-05	6.127E-03
establishment of chromosome localization	GO:0051303		1.332E-05	5.106E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	6.124E-03
outer mitochondrial membrane organization	GO:0007008		1.864E-05	5.358E-03
positive regulation of mitotic cell cycle	GO:0045931		1.864E-05	4.763E-03
regulation of focal adhesion formation	GO:0051893		1.864E-05	4.287E-03
chaperone-mediated protein complex assembly	GO:0051131		2.484E-05	5.193E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		3.022E-06	7.382E-03
negative regulation of protein ubiquitination	GO:0031397		3.321E-06	4.057E-03
protein refolding	GO:0042026		4.98E-06	4.055E-03
activation of Ras GTPase activity	GO:0032856		4.98E-06	3.041E-03
positive regulation of mitotic cell cycle	GO:0045931		6.969E-06	3.405E-03
spindle checkpoint	GO:0031577		6.969E-06	2.838E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.289E-06	3.242E-03
chaperone-mediated protein complex assembly	GO:0051131		9.289E-06	2.837E-03
outer mitochondrial membrane organization	GO:0007008		9.289E-06	2.521E-03
regulation of focal adhesion formation	GO:0051893		9.289E-06	2.269E-03
establishment of chromosome localization	GO:0051303		9.289E-06	2.063E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		4.625E-06	0.01112725
activation of Ras GTPase activity	GO:0032856		4.625E-06	5.564E-03
positive regulation of cell cycle	GO:0045787		4.952E-06	3.972E-03
protein refolding	GO:0042026		6.934E-06	4.171E-03
positive regulation of mitotic cell cycle	GO:0045931		9.704E-06	4.67E-03
spindle checkpoint	GO:0031577		9.704E-06	3.891E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.293E-05	4.445E-03
chaperone-mediated protein complex assembly	GO:0051131		1.293E-05	3.89E-03
outer mitochondrial membrane organization	GO:0007008		1.293E-05	3.457E-03
regulation of focal adhesion formation	GO:0051893		1.293E-05	3.112E-03
establishment of chromosome localization	GO:0051303		1.293E-05	2.829E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		3.022E-06	7.382E-03
negative regulation of protein ubiquitination	GO:0031397		3.321E-06	4.057E-03
protein refolding	GO:0042026		4.98E-06	4.055E-03
activation of Ras GTPase activity	GO:0032856		4.98E-06	3.041E-03
positive regulation of mitotic cell cycle	GO:0045931		6.969E-06	3.405E-03
spindle checkpoint	GO:0031577		6.969E-06	2.838E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.289E-06	3.242E-03
chaperone-mediated protein complex assembly	GO:0051131		9.289E-06	2.837E-03
outer mitochondrial membrane organization	GO:0007008		9.289E-06	2.521E-03
regulation of focal adhesion formation	GO:0051893		9.289E-06	2.269E-03
establishment of chromosome localization	GO:0051303		9.289E-06	2.063E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		4.625E-06	0.01112725
activation of Ras GTPase activity	GO:0032856		4.625E-06	5.564E-03
positive regulation of cell cycle	GO:0045787		4.952E-06	3.972E-03
protein refolding	GO:0042026		6.934E-06	4.171E-03
positive regulation of mitotic cell cycle	GO:0045931		9.704E-06	4.67E-03
spindle checkpoint	GO:0031577		9.704E-06	3.891E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.293E-05	4.445E-03
chaperone-mediated protein complex assembly	GO:0051131		1.293E-05	3.89E-03
outer mitochondrial membrane organization	GO:0007008		1.293E-05	3.457E-03
regulation of focal adhesion formation	GO:0051893		1.293E-05	3.112E-03
establishment of chromosome localization	GO:0051303		1.293E-05	2.829E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		4.625E-06	0.01112725
activation of Ras GTPase activity	GO:0032856		4.625E-06	5.564E-03
positive regulation of cell cycle	GO:0045787		4.952E-06	3.972E-03
protein refolding	GO:0042026		6.934E-06	4.171E-03
positive regulation of mitotic cell cycle	GO:0045931		9.704E-06	4.67E-03
spindle checkpoint	GO:0031577		9.704E-06	3.891E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.293E-05	4.445E-03
chaperone-mediated protein complex assembly	GO:0051131		1.293E-05	3.89E-03
outer mitochondrial membrane organization	GO:0007008		1.293E-05	3.457E-03
regulation of focal adhesion formation	GO:0051893		1.293E-05	3.112E-03
establishment of chromosome localization	GO:0051303		1.293E-05	2.829E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		8.885E-06	0.0204359
positive regulation of Rho GTPase activity	GO:0032321		8.885E-06	0.01021795
positive regulation of cell cycle	GO:0045787		1.057E-05	8.102E-03
protein refolding	GO:0042026		1.332E-05	7.659E-03
spindle checkpoint	GO:0031577		1.332E-05	6.127E-03
establishment of chromosome localization	GO:0051303		1.332E-05	5.106E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	6.124E-03
outer mitochondrial membrane organization	GO:0007008		1.864E-05	5.358E-03
positive regulation of mitotic cell cycle	GO:0045931		1.864E-05	4.763E-03
regulation of focal adhesion formation	GO:0051893		1.864E-05	4.287E-03
chaperone-mediated protein complex assembly	GO:0051131		2.484E-05	5.193E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		8.885E-06	0.0204359
positive regulation of Rho GTPase activity	GO:0032321		8.885E-06	0.01021795
positive regulation of cell cycle	GO:0045787		1.057E-05	8.102E-03
protein refolding	GO:0042026		1.332E-05	7.659E-03
spindle checkpoint	GO:0031577		1.332E-05	6.127E-03
establishment of chromosome localization	GO:0051303		1.332E-05	5.106E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	6.124E-03
outer mitochondrial membrane organization	GO:0007008		1.864E-05	5.358E-03
positive regulation of mitotic cell cycle	GO:0045931		1.864E-05	4.763E-03
regulation of focal adhesion formation	GO:0051893		1.864E-05	4.287E-03
chaperone-mediated protein complex assembly	GO:0051131		2.484E-05	5.193E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		8.885E-06	0.0204359
positive regulation of Rho GTPase activity	GO:0032321		8.885E-06	0.01021795
positive regulation of cell cycle	GO:0045787		1.057E-05	8.102E-03
protein refolding	GO:0042026		1.332E-05	7.659E-03
spindle checkpoint	GO:0031577		1.332E-05	6.127E-03
establishment of chromosome localization	GO:0051303		1.332E-05	5.106E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	6.124E-03
outer mitochondrial membrane organization	GO:0007008		1.864E-05	5.358E-03
positive regulation of mitotic cell cycle	GO:0045931		1.864E-05	4.763E-03
regulation of focal adhesion formation	GO:0051893		1.864E-05	4.287E-03
chaperone-mediated protein complex assembly	GO:0051131		2.484E-05	5.193E-03