Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2189-2-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1938	1.234e-02	2.362e-02	4.950e-02
IPC-NIBC-129	0.1730	1.096e-01	6.909e-02	4.405e-01
Ivshina_GPL96-GPL97	0.2331	5.253e-02	3.885e-02	4.297e-01
Loi_GPL570	0.2097	1.139e-01	8.908e-02	4.295e-01
Loi_GPL96-GPL97	0.1879	5.992e-03	2.000e-05	5.110e-02
Pawitan_GPL96-GPL97	0.3330	1.212e-01	6.022e-02	5.434e-01
Schmidt	0.1897	1.585e-02	2.209e-02	8.908e-02
Sotiriou	0.2973	7.132e-02	5.161e-02	4.448e-01
Zhang	0.2352	6.138e-03	9.125e-03	2.673e-02

Expression data for subnetwork 2189-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 2189-2-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
mybl2		9	7	29	13	0.162	0.237	0.166	0.079	0.124	0.275	0.202	0.182	0.074
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
fancg		3	25	31	30	0.081	0.214	0.140	0.118	0.100	0.215	0.173	0.118	0.070
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 2189-2-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		2.197E-08	5.052E-05
response to endoplasmic reticulum stress	GO:0034976		5.212E-08	5.994E-05
ER-nuclear signaling pathway	GO:0006984		6.938E-08	5.319E-05
response to unfolded protein	GO:0006986		2.729E-06	1.569E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	1.326E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	1.222E-03
response to protein stimulus	GO:0051789		3.309E-06	1.087E-03
ER-associated protein catabolic process	GO:0030433		7.546E-06	2.169E-03
ovarian follicle development	GO:0001541		2.876E-05	7.349E-03
spermatid development	GO:0007286		3.463E-05	7.965E-03
fat cell differentiation	GO:0045444		3.777E-05	7.898E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		5.324E-09	1.301E-05
response to endoplasmic reticulum stress	GO:0034976		1.214E-08	1.482E-05
ER-nuclear signaling pathway	GO:0006984		1.705E-08	1.389E-05
retrograde protein transport. ER to cytosol	GO:0030970		3.324E-07	2.03E-04
response to unfolded protein	GO:0006986		5.454E-07	2.665E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		6.023E-07	2.452E-04
response to protein stimulus	GO:0051789		6.63E-07	2.314E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.303E-07	2.841E-04
ER-associated protein catabolic process	GO:0030433		3.486E-06	9.464E-04
ovarian follicle development	GO:0001541		6.969E-06	1.703E-03
fat cell differentiation	GO:0045444		1.254E-05	2.784E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		7.438E-09	1.79E-05
response to endoplasmic reticulum stress	GO:0034976		1.764E-08	2.123E-05
ER-nuclear signaling pathway	GO:0006984		2.512E-08	2.015E-05
retrograde protein transport. ER to cytosol	GO:0030970		4.629E-07	2.784E-04
response to unfolded protein	GO:0006986		7.532E-07	3.624E-04
response to protein stimulus	GO:0051789		9.258E-07	3.713E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		9.888E-07	3.399E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.296E-06	3.897E-04
ER-associated protein catabolic process	GO:0030433		4.855E-06	1.298E-03
ovarian follicle development	GO:0001541		9.704E-06	2.335E-03
fat cell differentiation	GO:0045444		1.621E-05	3.545E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		5.324E-09	1.301E-05
response to endoplasmic reticulum stress	GO:0034976		1.214E-08	1.482E-05
ER-nuclear signaling pathway	GO:0006984		1.705E-08	1.389E-05
retrograde protein transport. ER to cytosol	GO:0030970		3.324E-07	2.03E-04
response to unfolded protein	GO:0006986		5.454E-07	2.665E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		6.023E-07	2.452E-04
response to protein stimulus	GO:0051789		6.63E-07	2.314E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.303E-07	2.841E-04
ER-associated protein catabolic process	GO:0030433		3.486E-06	9.464E-04
ovarian follicle development	GO:0001541		6.969E-06	1.703E-03
fat cell differentiation	GO:0045444		1.254E-05	2.784E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		7.438E-09	1.79E-05
response to endoplasmic reticulum stress	GO:0034976		1.764E-08	2.123E-05
ER-nuclear signaling pathway	GO:0006984		2.512E-08	2.015E-05
retrograde protein transport. ER to cytosol	GO:0030970		4.629E-07	2.784E-04
response to unfolded protein	GO:0006986		7.532E-07	3.624E-04
response to protein stimulus	GO:0051789		9.258E-07	3.713E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		9.888E-07	3.399E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.296E-06	3.897E-04
ER-associated protein catabolic process	GO:0030433		4.855E-06	1.298E-03
ovarian follicle development	GO:0001541		9.704E-06	2.335E-03
fat cell differentiation	GO:0045444		1.621E-05	3.545E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		7.438E-09	1.79E-05
response to endoplasmic reticulum stress	GO:0034976		1.764E-08	2.123E-05
ER-nuclear signaling pathway	GO:0006984		2.512E-08	2.015E-05
retrograde protein transport. ER to cytosol	GO:0030970		4.629E-07	2.784E-04
response to unfolded protein	GO:0006986		7.532E-07	3.624E-04
response to protein stimulus	GO:0051789		9.258E-07	3.713E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		9.888E-07	3.399E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.296E-06	3.897E-04
ER-associated protein catabolic process	GO:0030433		4.855E-06	1.298E-03
ovarian follicle development	GO:0001541		9.704E-06	2.335E-03
fat cell differentiation	GO:0045444		1.621E-05	3.545E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		2.197E-08	5.052E-05
response to endoplasmic reticulum stress	GO:0034976		5.212E-08	5.994E-05
ER-nuclear signaling pathway	GO:0006984		6.938E-08	5.319E-05
response to unfolded protein	GO:0006986		2.729E-06	1.569E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	1.326E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	1.222E-03
response to protein stimulus	GO:0051789		3.309E-06	1.087E-03
ER-associated protein catabolic process	GO:0030433		7.546E-06	2.169E-03
ovarian follicle development	GO:0001541		2.876E-05	7.349E-03
spermatid development	GO:0007286		3.463E-05	7.965E-03
fat cell differentiation	GO:0045444		3.777E-05	7.898E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		2.197E-08	5.052E-05
response to endoplasmic reticulum stress	GO:0034976		5.212E-08	5.994E-05
ER-nuclear signaling pathway	GO:0006984		6.938E-08	5.319E-05
response to unfolded protein	GO:0006986		2.729E-06	1.569E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	1.326E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	1.222E-03
response to protein stimulus	GO:0051789		3.309E-06	1.087E-03
ER-associated protein catabolic process	GO:0030433		7.546E-06	2.169E-03
ovarian follicle development	GO:0001541		2.876E-05	7.349E-03
spermatid development	GO:0007286		3.463E-05	7.965E-03
fat cell differentiation	GO:0045444		3.777E-05	7.898E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		2.197E-08	5.052E-05
response to endoplasmic reticulum stress	GO:0034976		5.212E-08	5.994E-05
ER-nuclear signaling pathway	GO:0006984		6.938E-08	5.319E-05
response to unfolded protein	GO:0006986		2.729E-06	1.569E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	1.326E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	1.222E-03
response to protein stimulus	GO:0051789		3.309E-06	1.087E-03
ER-associated protein catabolic process	GO:0030433		7.546E-06	2.169E-03
ovarian follicle development	GO:0001541		2.876E-05	7.349E-03
spermatid development	GO:0007286		3.463E-05	7.965E-03
fat cell differentiation	GO:0045444		3.777E-05	7.898E-03