Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 80145-9-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1547	2.195e-02	9.425e-03	1.079e-01
IPC-NIBC-129	0.2127	1.288e-01	1.169e-01	5.203e-01
Ivshina_GPL96-GPL97	0.2091	2.497e-02	1.782e-02	2.669e-01
Loi_GPL570	0.1975	9.729e-02	1.222e-01	3.719e-01
Loi_GPL96-GPL97	0.1729	1.859e-02	1.124e-02	2.567e-01
Pawitan_GPL96-GPL97	0.3462	1.001e-01	5.447e-02	4.960e-01
Schmidt	0.2126	3.112e-02	3.291e-02	1.944e-01
Sotiriou	0.2564	9.844e-02	4.092e-02	5.629e-01
Wang	0.2094	4.060e-02	2.685e-02	1.535e-01
Zhang	0.2548	4.928e-03	2.310e-03	2.608e-02

Expression data for subnetwork 80145-9-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 80145-9-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
pole		3	39	171	151	0.073	0.135	0.081	-0.205	0.081	0.139	0.145	0.105	0.068	-0.014
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
ccnb1		33	4	68	40	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.152	0.167
thoc7		1	90	171	178	-0.040	0.148	0.110	-0.113	0.072	0.135	-0.066	0.095	0.134	0.219
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 80145-9-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
interphase of mitotic cell cycle	GO:0051329		1.754E-07	2.018E-04
interphase	GO:0051325		1.925E-07	1.476E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.256E-06	1.297E-03
positive regulation of cell cycle	GO:0045787		2.592E-06	1.192E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.158E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.069E-08	1.238E-04
interphase of mitotic cell cycle	GO:0051329		1.258E-07	1.536E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.362E-06	1.109E-03
positive regulation of cell cycle	GO:0045787		1.551E-06	9.472E-04
positive regulation of viral genome replication	GO:0045070		2.151E-06	1.051E-03
meiotic chromosome segregation	GO:0045132		2.151E-06	8.759E-04
nucleotide-excision repair	GO:0006289		2.617E-06	9.132E-04
regulation of retroviral genome replication	GO:0045091		3.226E-06	9.851E-04
establishment of spindle localization	GO:0051293		3.226E-06	8.757E-04
chromosome segregation	GO:0007059		4.271E-06	1.043E-03
phosphoinositide-mediated signaling	GO:0048015		6.007E-06	1.334E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		6.86E-08	1.65E-04
interphase of mitotic cell cycle	GO:0051329		1.642E-07	1.976E-04
interphase	GO:0051325		1.862E-07	1.493E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.841E-06	1.108E-03
positive regulation of cell cycle	GO:0045787		2.097E-06	1.009E-03
positive regulation of viral genome replication	GO:0045070		2.644E-06	1.06E-03
regulation of retroviral genome replication	GO:0045091		2.644E-06	9.086E-04
meiotic chromosome segregation	GO:0045132		2.644E-06	7.951E-04
nucleotide-excision repair	GO:0006289		3.352E-06	8.961E-04
establishment of spindle localization	GO:0051293		3.964E-06	9.538E-04
chromosome segregation	GO:0007059		5.772E-06	1.262E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.069E-08	1.238E-04
interphase of mitotic cell cycle	GO:0051329		1.258E-07	1.536E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.362E-06	1.109E-03
positive regulation of cell cycle	GO:0045787		1.551E-06	9.472E-04
positive regulation of viral genome replication	GO:0045070		2.151E-06	1.051E-03
meiotic chromosome segregation	GO:0045132		2.151E-06	8.759E-04
nucleotide-excision repair	GO:0006289		2.617E-06	9.132E-04
regulation of retroviral genome replication	GO:0045091		3.226E-06	9.851E-04
establishment of spindle localization	GO:0051293		3.226E-06	8.757E-04
chromosome segregation	GO:0007059		4.271E-06	1.043E-03
phosphoinositide-mediated signaling	GO:0048015		6.007E-06	1.334E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		6.86E-08	1.65E-04
interphase of mitotic cell cycle	GO:0051329		1.642E-07	1.976E-04
interphase	GO:0051325		1.862E-07	1.493E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.841E-06	1.108E-03
positive regulation of cell cycle	GO:0045787		2.097E-06	1.009E-03
positive regulation of viral genome replication	GO:0045070		2.644E-06	1.06E-03
regulation of retroviral genome replication	GO:0045091		2.644E-06	9.086E-04
meiotic chromosome segregation	GO:0045132		2.644E-06	7.951E-04
nucleotide-excision repair	GO:0006289		3.352E-06	8.961E-04
establishment of spindle localization	GO:0051293		3.964E-06	9.538E-04
chromosome segregation	GO:0007059		5.772E-06	1.262E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		6.86E-08	1.65E-04
interphase of mitotic cell cycle	GO:0051329		1.642E-07	1.976E-04
interphase	GO:0051325		1.862E-07	1.493E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.841E-06	1.108E-03
positive regulation of cell cycle	GO:0045787		2.097E-06	1.009E-03
positive regulation of viral genome replication	GO:0045070		2.644E-06	1.06E-03
regulation of retroviral genome replication	GO:0045091		2.644E-06	9.086E-04
meiotic chromosome segregation	GO:0045132		2.644E-06	7.951E-04
nucleotide-excision repair	GO:0006289		3.352E-06	8.961E-04
establishment of spindle localization	GO:0051293		3.964E-06	9.538E-04
chromosome segregation	GO:0007059		5.772E-06	1.262E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
interphase of mitotic cell cycle	GO:0051329		1.754E-07	2.018E-04
interphase	GO:0051325		1.925E-07	1.476E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.256E-06	1.297E-03
positive regulation of cell cycle	GO:0045787		2.592E-06	1.192E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.158E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
interphase of mitotic cell cycle	GO:0051329		1.754E-07	2.018E-04
interphase	GO:0051325		1.925E-07	1.476E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.256E-06	1.297E-03
positive regulation of cell cycle	GO:0045787		2.592E-06	1.192E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.158E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
interphase of mitotic cell cycle	GO:0051329		1.754E-07	2.018E-04
interphase	GO:0051325		1.925E-07	1.476E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.256E-06	1.297E-03
positive regulation of cell cycle	GO:0045787		2.592E-06	1.192E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.158E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
interphase of mitotic cell cycle	GO:0051329		1.754E-07	2.018E-04
interphase	GO:0051325		1.925E-07	1.476E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.256E-06	1.297E-03
positive regulation of cell cycle	GO:0045787		2.592E-06	1.192E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.158E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03