Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7108-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2180 | 1.593e-02 | 6.099e-03 | 8.411e-02 |
|---|
| IPC-NIBC-129 | 0.2746 | 5.460e-02 | 4.425e-02 | 2.597e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2245 | 7.260e-03 | 4.169e-03 | 9.288e-02 |
|---|
| Loi_GPL570 | 0.2660 | 1.038e-01 | 1.297e-01 | 3.895e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1594 | 1.476e-03 | 3.640e-04 | 1.003e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3064 | 7.624e-02 | 3.844e-02 | 4.161e-01 |
|---|
| Schmidt | 0.2076 | 2.231e-02 | 2.377e-02 | 1.474e-01 |
|---|
| Sotiriou | 0.2775 | 1.220e-01 | 5.554e-02 | 6.329e-01 |
|---|
| Wang | 0.1370 | 1.394e-01 | 1.271e-01 | 3.810e-01 |
|---|
| Zhang | 0.2798 | 9.672e-03 | 4.905e-03 | 4.548e-02 |
|---|
Expression data for subnetwork 7108-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7108-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| sp1 |   | 31 | 5 | 16 | 8 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.202 | 0.284 | 0.227 | 0.194 | 0.091 |
|---|
| pcna | | 39 | 3 | 8 | 3 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 |
|---|
| vegfa | | 2 | 53 | 56 | 51 | 0.122 | 0.407 | 0.031 | 0.140 | 0.118 | -0.021 | 0.075 | 0.051 | 0.135 | 0.088 |
|---|
| ybx1 | | 2 | 53 | 56 | 51 | 0.056 | 0.247 | 0.058 | 0.045 | 0.065 | 0.123 | 0.128 | 0.056 | -0.081 | -0.021 |
|---|
| top2a | | 22 | 7 | 70 | 46 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 |
|---|
| sema3f | | 2 | 53 | 56 | 51 | 0.102 | -0.053 | 0.093 | 0.151 | 0.123 | 0.130 | 0.090 | 0.121 | 0.035 | 0.047 |
|---|
| tm7sf2 | | 1 | 90 | 91 | 100 | -0.064 | 0.079 | 0.087 | 0.091 | 0.094 | 0.075 | -0.023 | 0.093 | -0.006 | 0.136 |
|---|
| hif1a | | 7 | 15 | 16 | 13 | 0.097 | 0.246 | 0.089 | -0.009 | 0.101 | 0.011 | -0.043 | 0.119 | 0.172 | 0.129 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 7108-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 |  | 1.83E-08 | 4.208E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 5.116E-08 | 5.883E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.504E-07 | 1.153E-04 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 1.83E-06 | 1.052E-03 |
|---|
| in utero embryonic development | GO:0001701 | | 2.463E-06 | 1.133E-03 |
|---|
| tissue remodeling | GO:0048771 | | 6.406E-06 | 2.456E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 9.995E-06 | 3.284E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 2.873E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.299E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 2.09E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 8.515E-09 | 2.08E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 1.823E-08 | 2.227E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 2.506E-08 | 2.041E-05 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 4.418E-07 | 2.698E-04 |
|---|
| tissue remodeling | GO:0048771 | | 1.169E-06 | 5.713E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.593E-06 | 1.056E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 3.005E-06 | 1.049E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 3.005E-06 | 9.176E-04 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.005E-06 | 8.157E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 3.005E-06 | 7.341E-04 |
|---|
| mRNA transcription | GO:0009299 | | 3.005E-06 | 6.674E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.399E-08 | 3.367E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 2.996E-08 | 3.604E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 4.118E-08 | 3.303E-05 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 6.448E-07 | 3.878E-04 |
|---|
| tissue remodeling | GO:0048771 | | 1.918E-06 | 9.229E-04 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 4.185E-06 | 1.678E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 4.185E-06 | 1.438E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 4.185E-06 | 1.259E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.185E-06 | 1.119E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.185E-06 | 1.007E-03 |
|---|
| mRNA transcription | GO:0009299 | | 4.185E-06 | 9.153E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 8.515E-09 | 2.08E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 1.823E-08 | 2.227E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 2.506E-08 | 2.041E-05 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 4.418E-07 | 2.698E-04 |
|---|
| tissue remodeling | GO:0048771 | | 1.169E-06 | 5.713E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.593E-06 | 1.056E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 3.005E-06 | 1.049E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 3.005E-06 | 9.176E-04 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.005E-06 | 8.157E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 3.005E-06 | 7.341E-04 |
|---|
| mRNA transcription | GO:0009299 | | 3.005E-06 | 6.674E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.399E-08 | 3.367E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 2.996E-08 | 3.604E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 4.118E-08 | 3.303E-05 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 6.448E-07 | 3.878E-04 |
|---|
| tissue remodeling | GO:0048771 | | 1.918E-06 | 9.229E-04 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 4.185E-06 | 1.678E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 4.185E-06 | 1.438E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 4.185E-06 | 1.259E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.185E-06 | 1.119E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.185E-06 | 1.007E-03 |
|---|
| mRNA transcription | GO:0009299 | | 4.185E-06 | 9.153E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.399E-08 | 3.367E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 2.996E-08 | 3.604E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 4.118E-08 | 3.303E-05 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 6.448E-07 | 3.878E-04 |
|---|
| tissue remodeling | GO:0048771 | | 1.918E-06 | 9.229E-04 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 4.185E-06 | 1.678E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 4.185E-06 | 1.438E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 4.185E-06 | 1.259E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.185E-06 | 1.119E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.185E-06 | 1.007E-03 |
|---|
| mRNA transcription | GO:0009299 | | 4.185E-06 | 9.153E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.83E-08 | 4.208E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 5.116E-08 | 5.883E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.504E-07 | 1.153E-04 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 1.83E-06 | 1.052E-03 |
|---|
| in utero embryonic development | GO:0001701 | | 2.463E-06 | 1.133E-03 |
|---|
| tissue remodeling | GO:0048771 | | 6.406E-06 | 2.456E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 9.995E-06 | 3.284E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 2.873E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.299E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 2.09E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.83E-08 | 4.208E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 5.116E-08 | 5.883E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.504E-07 | 1.153E-04 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 1.83E-06 | 1.052E-03 |
|---|
| in utero embryonic development | GO:0001701 | | 2.463E-06 | 1.133E-03 |
|---|
| tissue remodeling | GO:0048771 | | 6.406E-06 | 2.456E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 9.995E-06 | 3.284E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 2.873E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.299E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 2.09E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.83E-08 | 4.208E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 5.116E-08 | 5.883E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.504E-07 | 1.153E-04 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 1.83E-06 | 1.052E-03 |
|---|
| in utero embryonic development | GO:0001701 | | 2.463E-06 | 1.133E-03 |
|---|
| tissue remodeling | GO:0048771 | | 6.406E-06 | 2.456E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 9.995E-06 | 3.284E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 2.873E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.299E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 2.09E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.83E-08 | 4.208E-05 |
|---|
| regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030947 | | 5.116E-08 | 5.883E-05 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.504E-07 | 1.153E-04 |
|---|
| regulation of endothelial cell proliferation | GO:0001936 | | 1.83E-06 | 1.052E-03 |
|---|
| in utero embryonic development | GO:0001701 | | 2.463E-06 | 1.133E-03 |
|---|
| tissue remodeling | GO:0048771 | | 6.406E-06 | 2.456E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 9.995E-06 | 3.284E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 2.873E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.299E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 2.09E-03 |
|---|
