Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 59341-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1695	1.224e-02	4.261e-03	6.839e-02
IPC-NIBC-129	0.2050	6.941e-02	5.814e-02	3.209e-01
Ivshina_GPL96-GPL97	0.2371	2.906e-02	2.128e-02	2.993e-01
Loi_GPL570	0.2471	1.508e-01	1.825e-01	5.005e-01
Loi_GPL96-GPL97	0.1933	1.049e-02	5.241e-03	1.405e-01
Pawitan_GPL96-GPL97	0.2826	6.750e-02	3.288e-02	3.829e-01
Schmidt	0.1789	1.107e-02	1.198e-02	7.952e-02
Sotiriou	0.3215	7.087e-02	2.560e-02	4.605e-01
Wang	0.1739	7.473e-02	5.839e-02	2.438e-01
Zhang	0.2909	1.443e-02	7.672e-03	6.295e-02

Expression data for subnetwork 59341-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 59341-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
calm1		16	10	35	19	0.038	0.023	0.171	0.277	0.113	0.007	0.171	0.112	0.087	0.162
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
hmmr		10	14	35	23	0.112	0.310	0.147	0.127	0.145	0.221	0.179	0.233	0.227	0.144
trpv4		1	90	114	120	0.006	0.209	0.101	0.051	0.071	0.072	-0.001	0.127	-0.005	-0.067
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 59341-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cell volume homeostasis	GO:0006884		2.137E-05	0.02457665
response to osmotic stress	GO:0006970		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.05703143
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.05720536
fat cell differentiation	GO:0045444		1.627E-04	0.05346626
response to mechanical stimulus	GO:0009612		2.733E-04	0.07856707
response to calcium ion	GO:0051592		4.565E-04	0.11666519
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.12138942
positive regulation of cell cycle	GO:0045787		5.781E-04	0.12087549

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	0.01653866
cell volume homeostasis	GO:0006884		1.087E-05	0.01328202
response to osmotic stress	GO:0006970		2.894E-05	0.02357001
cellular response to unfolded protein	GO:0034620		4.577E-05	0.02795581
response to endoplasmic reticulum stress	GO:0034976		7.815E-05	0.0381865
fat cell differentiation	GO:0045444		9.085E-05	0.03698933
ER-nuclear signaling pathway	GO:0006984		9.755E-05	0.03404345
response to mechanical stimulus	GO:0009612		1.191E-04	0.03635854
G1/S transition of mitotic cell cycle	GO:0000082		2.474E-04	0.06715659
positive regulation of cell cycle	GO:0045787		2.695E-04	0.06583235
response to calcium ion	GO:0051592		2.809E-04	0.06237559

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
cell volume homeostasis	GO:0006884		1.188E-05	0.01428905
response to osmotic stress	GO:0006970		3.162E-05	0.02535557
cellular response to unfolded protein	GO:0034620		4.501E-05	0.02707358
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.03792743
fat cell differentiation	GO:0045444		9.216E-05	0.03695633
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.03410297
response to mechanical stimulus	GO:0009612		1.3E-04	0.03910676
G1/S transition of mitotic cell cycle	GO:0000082		2.702E-04	0.07222279
response to calcium ion	GO:0051592		2.821E-04	0.06786839
positive regulation of cell cycle	GO:0045787		2.943E-04	0.06436114

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	0.01653866
cell volume homeostasis	GO:0006884		1.087E-05	0.01328202
response to osmotic stress	GO:0006970		2.894E-05	0.02357001
cellular response to unfolded protein	GO:0034620		4.577E-05	0.02795581
response to endoplasmic reticulum stress	GO:0034976		7.815E-05	0.0381865
fat cell differentiation	GO:0045444		9.085E-05	0.03698933
ER-nuclear signaling pathway	GO:0006984		9.755E-05	0.03404345
response to mechanical stimulus	GO:0009612		1.191E-04	0.03635854
G1/S transition of mitotic cell cycle	GO:0000082		2.474E-04	0.06715659
positive regulation of cell cycle	GO:0045787		2.695E-04	0.06583235
response to calcium ion	GO:0051592		2.809E-04	0.06237559

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
cell volume homeostasis	GO:0006884		1.188E-05	0.01428905
response to osmotic stress	GO:0006970		3.162E-05	0.02535557
cellular response to unfolded protein	GO:0034620		4.501E-05	0.02707358
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.03792743
fat cell differentiation	GO:0045444		9.216E-05	0.03695633
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.03410297
response to mechanical stimulus	GO:0009612		1.3E-04	0.03910676
G1/S transition of mitotic cell cycle	GO:0000082		2.702E-04	0.07222279
response to calcium ion	GO:0051592		2.821E-04	0.06786839
positive regulation of cell cycle	GO:0045787		2.943E-04	0.06436114

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
cell volume homeostasis	GO:0006884		1.188E-05	0.01428905
response to osmotic stress	GO:0006970		3.162E-05	0.02535557
cellular response to unfolded protein	GO:0034620		4.501E-05	0.02707358
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.03792743
fat cell differentiation	GO:0045444		9.216E-05	0.03695633
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.03410297
response to mechanical stimulus	GO:0009612		1.3E-04	0.03910676
G1/S transition of mitotic cell cycle	GO:0000082		2.702E-04	0.07222279
response to calcium ion	GO:0051592		2.821E-04	0.06786839
positive regulation of cell cycle	GO:0045787		2.943E-04	0.06436114

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cell volume homeostasis	GO:0006884		2.137E-05	0.02457665
response to osmotic stress	GO:0006970		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.05703143
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.05720536
fat cell differentiation	GO:0045444		1.627E-04	0.05346626
response to mechanical stimulus	GO:0009612		2.733E-04	0.07856707
response to calcium ion	GO:0051592		4.565E-04	0.11666519
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.12138942
positive regulation of cell cycle	GO:0045787		5.781E-04	0.12087549

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cell volume homeostasis	GO:0006884		2.137E-05	0.02457665
response to osmotic stress	GO:0006970		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.05703143
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.05720536
fat cell differentiation	GO:0045444		1.627E-04	0.05346626
response to mechanical stimulus	GO:0009612		2.733E-04	0.07856707
response to calcium ion	GO:0051592		4.565E-04	0.11666519
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.12138942
positive regulation of cell cycle	GO:0045787		5.781E-04	0.12087549

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cell volume homeostasis	GO:0006884		2.137E-05	0.02457665
response to osmotic stress	GO:0006970		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.05703143
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.05720536
fat cell differentiation	GO:0045444		1.627E-04	0.05346626
response to mechanical stimulus	GO:0009612		2.733E-04	0.07856707
response to calcium ion	GO:0051592		4.565E-04	0.11666519
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.12138942
positive regulation of cell cycle	GO:0045787		5.781E-04	0.12087549

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cell volume homeostasis	GO:0006884		2.137E-05	0.02457665
response to osmotic stress	GO:0006970		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.05703143
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.05720536
fat cell differentiation	GO:0045444		1.627E-04	0.05346626
response to mechanical stimulus	GO:0009612		2.733E-04	0.07856707
response to calcium ion	GO:0051592		4.565E-04	0.11666519
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.12138942
positive regulation of cell cycle	GO:0045787		5.781E-04	0.12087549