Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 3978-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1811	2.097e-02	8.861e-03	1.042e-01
IPC-NIBC-129	0.2027	7.221e-02	6.081e-02	3.319e-01
Ivshina_GPL96-GPL97	0.2113	3.042e-02	2.244e-02	3.096e-01
Loi_GPL570	0.2439	6.169e-02	8.044e-02	2.651e-01
Loi_GPL96-GPL97	0.1577	6.622e-03	2.822e-03	8.132e-02
Pawitan_GPL96-GPL97	0.3468	1.069e-01	5.932e-02	5.166e-01
Schmidt	0.2469	4.088e-02	4.297e-02	2.417e-01
Sotiriou	0.2390	1.252e-01	5.769e-02	6.416e-01
Wang	0.1791	6.839e-02	5.220e-02	2.283e-01
Zhang	0.2487	4.876e-03	2.283e-03	2.585e-02

Expression data for subnetwork 3978-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 3978-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
tubb3		1	90	147	153	0.183	0.221	0.105	0.017	0.138	0.334	0.055	0.119	-0.023	-0.083
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
lig1		1	90	147	153	0.023	0.117	0.134	0.142	0.116	0.090	0.125	0.212	0.070	0.122
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
eif2s1		13	12	8	4	-0.031	0.151	0.253	0.182	0.098	0.270	0.233	0.038	0.122	0.239

GO Enrichment output for subnetwork 3978-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.275E-07	5.234E-04
positive regulation of cell cycle	GO:0045787		5.688E-06	6.541E-03
positive regulation of viral genome replication	GO:0045070		5.947E-06	4.56E-03
regulation of retroviral genome replication	GO:0045091		5.947E-06	3.42E-03
nucleotide-excision repair	GO:0006289		8.829E-06	4.061E-03
DNA topological change	GO:0006265		8.917E-06	3.418E-03
chromosome segregation	GO:0007059		1.166E-05	3.832E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	3.587E-03
V(D)J recombination	GO:0033151		2.137E-05	5.461E-03
DNA ligation	GO:0006266		2.137E-05	4.915E-03
natural killer cell mediated immunity	GO:0002228		2.137E-05	4.468E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.394E-08	8.291E-05
positive regulation of cell cycle	GO:0045787		1.04E-06	1.27E-03
positive regulation of viral genome replication	GO:0045070		1.661E-06	1.353E-03
meiotic chromosome segregation	GO:0045132		1.661E-06	1.014E-03
nucleotide-excision repair	GO:0006289		1.755E-06	8.574E-04
regulation of retroviral genome replication	GO:0045091		2.491E-06	1.014E-03
establishment of spindle localization	GO:0051293		2.491E-06	8.693E-04
chromosome segregation	GO:0007059		2.866E-06	8.751E-04
phosphoinositide-mediated signaling	GO:0048015		4.031E-06	1.094E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.135E-03
DNA topological change	GO:0006265		4.648E-06	1.032E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.575E-08	1.341E-04
positive regulation of cell cycle	GO:0045787		1.706E-06	2.052E-03
positive regulation of viral genome replication	GO:0045070		2.313E-06	1.855E-03
regulation of retroviral genome replication	GO:0045091		2.313E-06	1.391E-03
meiotic chromosome segregation	GO:0045132		2.313E-06	1.113E-03
nucleotide-excision repair	GO:0006289		2.727E-06	1.094E-03
establishment of spindle localization	GO:0051293		3.469E-06	1.192E-03
chromosome segregation	GO:0007059		4.697E-06	1.413E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.472E-06	1.73E-03
DNA topological change	GO:0006265		6.472E-06	1.557E-03
phosphoinositide-mediated signaling	GO:0048015		6.605E-06	1.445E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.394E-08	8.291E-05
positive regulation of cell cycle	GO:0045787		1.04E-06	1.27E-03
positive regulation of viral genome replication	GO:0045070		1.661E-06	1.353E-03
meiotic chromosome segregation	GO:0045132		1.661E-06	1.014E-03
nucleotide-excision repair	GO:0006289		1.755E-06	8.574E-04
regulation of retroviral genome replication	GO:0045091		2.491E-06	1.014E-03
establishment of spindle localization	GO:0051293		2.491E-06	8.693E-04
chromosome segregation	GO:0007059		2.866E-06	8.751E-04
phosphoinositide-mediated signaling	GO:0048015		4.031E-06	1.094E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.135E-03
DNA topological change	GO:0006265		4.648E-06	1.032E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.575E-08	1.341E-04
positive regulation of cell cycle	GO:0045787		1.706E-06	2.052E-03
positive regulation of viral genome replication	GO:0045070		2.313E-06	1.855E-03
regulation of retroviral genome replication	GO:0045091		2.313E-06	1.391E-03
meiotic chromosome segregation	GO:0045132		2.313E-06	1.113E-03
nucleotide-excision repair	GO:0006289		2.727E-06	1.094E-03
establishment of spindle localization	GO:0051293		3.469E-06	1.192E-03
chromosome segregation	GO:0007059		4.697E-06	1.413E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.472E-06	1.73E-03
DNA topological change	GO:0006265		6.472E-06	1.557E-03
phosphoinositide-mediated signaling	GO:0048015		6.605E-06	1.445E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.575E-08	1.341E-04
positive regulation of cell cycle	GO:0045787		1.706E-06	2.052E-03
positive regulation of viral genome replication	GO:0045070		2.313E-06	1.855E-03
regulation of retroviral genome replication	GO:0045091		2.313E-06	1.391E-03
meiotic chromosome segregation	GO:0045132		2.313E-06	1.113E-03
nucleotide-excision repair	GO:0006289		2.727E-06	1.094E-03
establishment of spindle localization	GO:0051293		3.469E-06	1.192E-03
chromosome segregation	GO:0007059		4.697E-06	1.413E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.472E-06	1.73E-03
DNA topological change	GO:0006265		6.472E-06	1.557E-03
phosphoinositide-mediated signaling	GO:0048015		6.605E-06	1.445E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.275E-07	5.234E-04
positive regulation of cell cycle	GO:0045787		5.688E-06	6.541E-03
positive regulation of viral genome replication	GO:0045070		5.947E-06	4.56E-03
regulation of retroviral genome replication	GO:0045091		5.947E-06	3.42E-03
nucleotide-excision repair	GO:0006289		8.829E-06	4.061E-03
DNA topological change	GO:0006265		8.917E-06	3.418E-03
chromosome segregation	GO:0007059		1.166E-05	3.832E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	3.587E-03
V(D)J recombination	GO:0033151		2.137E-05	5.461E-03
DNA ligation	GO:0006266		2.137E-05	4.915E-03
natural killer cell mediated immunity	GO:0002228		2.137E-05	4.468E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.275E-07	5.234E-04
positive regulation of cell cycle	GO:0045787		5.688E-06	6.541E-03
positive regulation of viral genome replication	GO:0045070		5.947E-06	4.56E-03
regulation of retroviral genome replication	GO:0045091		5.947E-06	3.42E-03
nucleotide-excision repair	GO:0006289		8.829E-06	4.061E-03
DNA topological change	GO:0006265		8.917E-06	3.418E-03
chromosome segregation	GO:0007059		1.166E-05	3.832E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	3.587E-03
V(D)J recombination	GO:0033151		2.137E-05	5.461E-03
DNA ligation	GO:0006266		2.137E-05	4.915E-03
natural killer cell mediated immunity	GO:0002228		2.137E-05	4.468E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.275E-07	5.234E-04
positive regulation of cell cycle	GO:0045787		5.688E-06	6.541E-03
positive regulation of viral genome replication	GO:0045070		5.947E-06	4.56E-03
regulation of retroviral genome replication	GO:0045091		5.947E-06	3.42E-03
nucleotide-excision repair	GO:0006289		8.829E-06	4.061E-03
DNA topological change	GO:0006265		8.917E-06	3.418E-03
chromosome segregation	GO:0007059		1.166E-05	3.832E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	3.587E-03
V(D)J recombination	GO:0033151		2.137E-05	5.461E-03
DNA ligation	GO:0006266		2.137E-05	4.915E-03
natural killer cell mediated immunity	GO:0002228		2.137E-05	4.468E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.275E-07	5.234E-04
positive regulation of cell cycle	GO:0045787		5.688E-06	6.541E-03
positive regulation of viral genome replication	GO:0045070		5.947E-06	4.56E-03
regulation of retroviral genome replication	GO:0045091		5.947E-06	3.42E-03
nucleotide-excision repair	GO:0006289		8.829E-06	4.061E-03
DNA topological change	GO:0006265		8.917E-06	3.418E-03
chromosome segregation	GO:0007059		1.166E-05	3.832E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	3.587E-03
V(D)J recombination	GO:0033151		2.137E-05	5.461E-03
DNA ligation	GO:0006266		2.137E-05	4.915E-03
natural killer cell mediated immunity	GO:0002228		2.137E-05	4.468E-03