Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2932-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1419 | 1.298e-02 | 4.617e-03 | 7.164e-02 |
|---|
| IPC-NIBC-129 | 0.1545 | 6.839e-02 | 5.717e-02 | 3.169e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2343 | 7.784e-02 | 6.674e-02 | 5.687e-01 |
|---|
| Loi_GPL570 | 0.2482 | 1.050e-01 | 1.311e-01 | 3.926e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2036 | 3.018e-02 | 2.126e-02 | 3.961e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3113 | 5.792e-02 | 2.702e-02 | 3.438e-01 |
|---|
| Schmidt | 0.2067 | 4.773e-02 | 5.000e-02 | 2.724e-01 |
|---|
| Sotiriou | 0.2291 | 6.002e-02 | 2.018e-02 | 4.124e-01 |
|---|
| Wang | 0.1988 | 4.876e-02 | 3.395e-02 | 1.767e-01 |
|---|
| Zhang | 0.3048 | 8.902e-03 | 4.470e-03 | 4.250e-02 |
|---|
Expression data for subnetwork 2932-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2932-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| pcna |   | 39 | 3 | 8 | 3 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 |
|---|
| fen1 | | 7 | 15 | 8 | 6 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.332 | 0.221 | 0.144 | 0.106 | 0.056 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| eif2s1 | | 13 | 12 | 8 | 4 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 |
|---|
| gsk3b | | 2 | 53 | 111 | 101 | 0.057 | 0.003 | 0.058 | 0.029 | 0.154 | -0.068 | 0.119 | 0.070 | 0.061 | 0.146 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 2932-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 |  | 3.264E-07 | 7.506E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.342E-07 | 4.994E-04 |
|---|
| response to UV | GO:0009411 | | 3.689E-06 | 2.828E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 6.469E-06 | 3.72E-03 |
|---|
| ER overload response | GO:0006983 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.207E-05 | 3.965E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.376E-05 | 3.955E-03 |
|---|
| UV protection | GO:0009650 | | 1.938E-05 | 4.952E-03 |
|---|
| response to light stimulus | GO:0009416 | | 3.406E-05 | 7.834E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 4.513E-05 | 9.436E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 7.61E-08 | 1.859E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.069E-07 | 1.306E-04 |
|---|
| response to UV | GO:0009411 | | 7.637E-07 | 6.219E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.958E-06 | 1.196E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 2.192E-06 | 1.071E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.922E-06 | 1.19E-03 |
|---|
| ER overload response | GO:0006983 | | 2.922E-06 | 1.02E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 5.737E-06 | 1.752E-03 |
|---|
| UV protection | GO:0009650 | | 5.737E-06 | 1.557E-03 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.251E-05 | 3.055E-03 |
|---|
| positive regulation of nucleocytoplasmic transport | GO:0046824 | | 1.979E-05 | 4.394E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.106E-07 | 2.661E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.574E-07 | 1.894E-04 |
|---|
| response to UV | GO:0009411 | | 1.119E-06 | 8.978E-04 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 3.053E-06 | 1.836E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.211E-06 | 1.545E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.632E-03 |
|---|
| ER overload response | GO:0006983 | | 4.07E-06 | 1.399E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 6.537E-06 | 1.966E-03 |
|---|
| UV protection | GO:0009650 | | 7.988E-06 | 2.136E-03 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.741E-05 | 4.189E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 2.219E-05 | 4.853E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 7.61E-08 | 1.859E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.069E-07 | 1.306E-04 |
|---|
| response to UV | GO:0009411 | | 7.637E-07 | 6.219E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.958E-06 | 1.196E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 2.192E-06 | 1.071E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.922E-06 | 1.19E-03 |
|---|
| ER overload response | GO:0006983 | | 2.922E-06 | 1.02E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 5.737E-06 | 1.752E-03 |
|---|
| UV protection | GO:0009650 | | 5.737E-06 | 1.557E-03 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.251E-05 | 3.055E-03 |
|---|
| positive regulation of nucleocytoplasmic transport | GO:0046824 | | 1.979E-05 | 4.394E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.106E-07 | 2.661E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.574E-07 | 1.894E-04 |
|---|
| response to UV | GO:0009411 | | 1.119E-06 | 8.978E-04 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 3.053E-06 | 1.836E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.211E-06 | 1.545E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.632E-03 |
|---|
| ER overload response | GO:0006983 | | 4.07E-06 | 1.399E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 6.537E-06 | 1.966E-03 |
|---|
| UV protection | GO:0009650 | | 7.988E-06 | 2.136E-03 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.741E-05 | 4.189E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 2.219E-05 | 4.853E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.106E-07 | 2.661E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.574E-07 | 1.894E-04 |
|---|
| response to UV | GO:0009411 | | 1.119E-06 | 8.978E-04 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 3.053E-06 | 1.836E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.211E-06 | 1.545E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.632E-03 |
|---|
| ER overload response | GO:0006983 | | 4.07E-06 | 1.399E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 6.537E-06 | 1.966E-03 |
|---|
| UV protection | GO:0009650 | | 7.988E-06 | 2.136E-03 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.741E-05 | 4.189E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 2.219E-05 | 4.853E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.264E-07 | 7.506E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.342E-07 | 4.994E-04 |
|---|
| response to UV | GO:0009411 | | 3.689E-06 | 2.828E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 6.469E-06 | 3.72E-03 |
|---|
| ER overload response | GO:0006983 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.207E-05 | 3.965E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.376E-05 | 3.955E-03 |
|---|
| UV protection | GO:0009650 | | 1.938E-05 | 4.952E-03 |
|---|
| response to light stimulus | GO:0009416 | | 3.406E-05 | 7.834E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 4.513E-05 | 9.436E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.264E-07 | 7.506E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.342E-07 | 4.994E-04 |
|---|
| response to UV | GO:0009411 | | 3.689E-06 | 2.828E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 6.469E-06 | 3.72E-03 |
|---|
| ER overload response | GO:0006983 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.207E-05 | 3.965E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.376E-05 | 3.955E-03 |
|---|
| UV protection | GO:0009650 | | 1.938E-05 | 4.952E-03 |
|---|
| response to light stimulus | GO:0009416 | | 3.406E-05 | 7.834E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 4.513E-05 | 9.436E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.264E-07 | 7.506E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.342E-07 | 4.994E-04 |
|---|
| response to UV | GO:0009411 | | 3.689E-06 | 2.828E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 6.469E-06 | 3.72E-03 |
|---|
| ER overload response | GO:0006983 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.207E-05 | 3.965E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.376E-05 | 3.955E-03 |
|---|
| UV protection | GO:0009650 | | 1.938E-05 | 4.952E-03 |
|---|
| response to light stimulus | GO:0009416 | | 3.406E-05 | 7.834E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 4.513E-05 | 9.436E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.264E-07 | 7.506E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.342E-07 | 4.994E-04 |
|---|
| response to UV | GO:0009411 | | 3.689E-06 | 2.828E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 6.469E-06 | 3.72E-03 |
|---|
| ER overload response | GO:0006983 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.207E-05 | 3.965E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.376E-05 | 3.955E-03 |
|---|
| UV protection | GO:0009650 | | 1.938E-05 | 4.952E-03 |
|---|
| response to light stimulus | GO:0009416 | | 3.406E-05 | 7.834E-03 |
|---|
| peptidyl-serine phosphorylation | GO:0018105 | | 4.513E-05 | 9.436E-03 |
|---|
