Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2305-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1588 | 1.994e-02 | 8.273e-03 | 1.002e-01 |
|---|
| IPC-NIBC-129 | 0.2452 | 6.853e-02 | 5.731e-02 | 3.175e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2138 | 1.308e-02 | 8.348e-03 | 1.575e-01 |
|---|
| Loi_GPL570 | 0.2481 | 1.209e-01 | 1.492e-01 | 4.327e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1972 | 1.588e-02 | 9.113e-03 | 2.194e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3529 | 6.029e-02 | 2.845e-02 | 3.537e-01 |
|---|
| Schmidt | 0.1960 | 1.604e-02 | 1.722e-02 | 1.108e-01 |
|---|
| Sotiriou | 0.2982 | 6.656e-02 | 2.340e-02 | 4.420e-01 |
|---|
| Wang | 0.1643 | 8.800e-02 | 7.172e-02 | 2.749e-01 |
|---|
| Zhang | 0.3012 | 4.400e-03 | 2.036e-03 | 2.373e-02 |
|---|
Expression data for subnetwork 2305-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2305-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| foxm1 | | 1 | 90 | 82 | 96 | 0.059 | 0.185 | 0.091 | 0.181 | 0.128 | 0.231 | 0.223 | 0.140 | 0.100 | 0.176 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 2305-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.811E-08 | 9.31E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.749E-07 | 7.022E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.106E-06 | 9.003E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-06 | 7.537E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.851E-06 | 9.043E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 7.692E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 6.891E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 6.86E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 6.097E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 6.724E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 6.605E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 1.085E-04 |
|---|
| interphase | GO:0051325 | | 5.114E-08 | 6.152E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 5.827E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.397E-06 | 8.403E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 6.998E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 5.832E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 8.204E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 7.503E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 7.587E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 6.828E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 7.605E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.811E-08 | 9.31E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.749E-07 | 7.022E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.106E-06 | 9.003E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-06 | 7.537E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.851E-06 | 9.043E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 7.692E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 6.891E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 6.86E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 6.097E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 6.724E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 6.605E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 1.085E-04 |
|---|
| interphase | GO:0051325 | | 5.114E-08 | 6.152E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 5.827E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.397E-06 | 8.403E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 6.998E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 5.832E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 8.204E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 7.503E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 7.587E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 6.828E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 7.605E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 1.085E-04 |
|---|
| interphase | GO:0051325 | | 5.114E-08 | 6.152E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 5.827E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.397E-06 | 8.403E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 6.998E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 5.832E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 8.204E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 7.503E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 7.587E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 6.828E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 7.605E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
