Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 22907-2-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1116	1.167e-02	3.992e-03	6.584e-02
IPC-NIBC-129	0.1909	4.011e-02	3.112e-02	1.945e-01
Ivshina_GPL96-GPL97	0.2394	3.834e-02	2.939e-02	3.654e-01
Loi_GPL570	0.2902	4.528e-02	6.052e-02	2.077e-01
Loi_GPL96-GPL97	0.1603	8.999e-02	8.623e-02	7.774e-01
Pawitan_GPL96-GPL97	0.3194	5.077e-02	2.282e-02	3.123e-01
Schmidt	0.2699	2.636e-02	2.799e-02	1.696e-01
Sotiriou	0.2669	1.202e-01	5.441e-02	6.281e-01
Wang	0.2397	2.401e-02	1.363e-02	1.015e-01
Zhang	0.3167	7.763e-03	3.836e-03	3.798e-02

Expression data for subnetwork 22907-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 22907-2-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
rbbp7		1	90	64	74	-0.113	0.089	0.051	0.076	0.106	-0.020	0.126	0.138	0.115	0.168
calm1		16	10	35	19	0.038	0.023	0.171	0.277	0.113	0.007	0.171	0.112	0.087	0.162
dhx30		1	90	64	74	0.066	-0.039	0.122	-0.072	0.099	0.326	0.065	0.160	-0.028	0.015
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
eif2s1		13	12	8	4	-0.031	0.151	0.253	0.182	0.098	0.270	0.233	0.038	0.122	0.239

GO Enrichment output for subnetwork 22907-2-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.052E-05	0.04719789
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.03307007
histone deacetylation	GO:0016575		7.51E-05	0.05757426
negative regulation of cell cycle process	GO:0010948		1.43E-04	0.0821973
protein amino acid deacetylation	GO:0006476		1.633E-04	0.07509739
cellular response to unfolded protein	GO:0034620		1.633E-04	0.06258116
nucleotide-excision repair. DNA gap filling	GO:0006297		1.633E-04	0.053641
regulation of mitotic metaphase/anaphase transition	GO:0030071		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
ER-nuclear signaling pathway	GO:0006984		3.425E-04	0.07876481
fat cell differentiation	GO:0045444		3.733E-04	0.07805731

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
meiotic chromosome segregation	GO:0045132		4.743E-06	0.01158756
positive regulation of cell cycle	GO:0045787		5.206E-06	6.359E-03
establishment of spindle localization	GO:0051293		7.112E-06	5.791E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.326E-05	8.101E-03
histone deacetylation	GO:0016575		4.959E-05	0.02422913
nucleotide-excision repair. DNA gap filling	GO:0006297		5.665E-05	0.02306542
negative regulation of cell cycle process	GO:0010948		6.417E-05	0.02239674
protein amino acid deacetylation	GO:0006476		8.954E-05	0.02734297
cellular response to unfolded protein	GO:0034620		8.954E-05	0.02430486
regulation of mitotic metaphase/anaphase transition	GO:0030071		1.088E-04	0.02657171
response to endoplasmic reticulum stress	GO:0034976		1.528E-04	0.03392728

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
meiotic chromosome segregation	GO:0045132		6.605E-06	0.01589185
positive regulation of cell cycle	GO:0045787		8.526E-06	0.01025628
establishment of spindle localization	GO:0051293		9.903E-06	7.942E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.847E-05	0.01110731
histone deacetylation	GO:0016575		6.9E-05	0.03320339
nucleotide-excision repair. DNA gap filling	GO:0006297		7.882E-05	0.03160619
negative regulation of cell cycle process	GO:0010948		8.928E-05	0.03068753
cellular response to unfolded protein	GO:0034620		1.121E-04	0.03372757
protein amino acid deacetylation	GO:0006476		1.245E-04	0.03329423
regulation of mitotic metaphase/anaphase transition	GO:0030071		1.513E-04	0.03639384
response to endoplasmic reticulum stress	GO:0034976		1.961E-04	0.04290239

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
meiotic chromosome segregation	GO:0045132		4.743E-06	0.01158756
positive regulation of cell cycle	GO:0045787		5.206E-06	6.359E-03
establishment of spindle localization	GO:0051293		7.112E-06	5.791E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.326E-05	8.101E-03
histone deacetylation	GO:0016575		4.959E-05	0.02422913
nucleotide-excision repair. DNA gap filling	GO:0006297		5.665E-05	0.02306542
negative regulation of cell cycle process	GO:0010948		6.417E-05	0.02239674
protein amino acid deacetylation	GO:0006476		8.954E-05	0.02734297
cellular response to unfolded protein	GO:0034620		8.954E-05	0.02430486
regulation of mitotic metaphase/anaphase transition	GO:0030071		1.088E-04	0.02657171
response to endoplasmic reticulum stress	GO:0034976		1.528E-04	0.03392728

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
meiotic chromosome segregation	GO:0045132		6.605E-06	0.01589185
positive regulation of cell cycle	GO:0045787		8.526E-06	0.01025628
establishment of spindle localization	GO:0051293		9.903E-06	7.942E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.847E-05	0.01110731
histone deacetylation	GO:0016575		6.9E-05	0.03320339
nucleotide-excision repair. DNA gap filling	GO:0006297		7.882E-05	0.03160619
negative regulation of cell cycle process	GO:0010948		8.928E-05	0.03068753
cellular response to unfolded protein	GO:0034620		1.121E-04	0.03372757
protein amino acid deacetylation	GO:0006476		1.245E-04	0.03329423
regulation of mitotic metaphase/anaphase transition	GO:0030071		1.513E-04	0.03639384
response to endoplasmic reticulum stress	GO:0034976		1.961E-04	0.04290239

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
meiotic chromosome segregation	GO:0045132		6.605E-06	0.01589185
positive regulation of cell cycle	GO:0045787		8.526E-06	0.01025628
establishment of spindle localization	GO:0051293		9.903E-06	7.942E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.847E-05	0.01110731
histone deacetylation	GO:0016575		6.9E-05	0.03320339
nucleotide-excision repair. DNA gap filling	GO:0006297		7.882E-05	0.03160619
negative regulation of cell cycle process	GO:0010948		8.928E-05	0.03068753
cellular response to unfolded protein	GO:0034620		1.121E-04	0.03372757
protein amino acid deacetylation	GO:0006476		1.245E-04	0.03329423
regulation of mitotic metaphase/anaphase transition	GO:0030071		1.513E-04	0.03639384
response to endoplasmic reticulum stress	GO:0034976		1.961E-04	0.04290239

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.052E-05	0.04719789
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.03307007
histone deacetylation	GO:0016575		7.51E-05	0.05757426
negative regulation of cell cycle process	GO:0010948		1.43E-04	0.0821973
protein amino acid deacetylation	GO:0006476		1.633E-04	0.07509739
cellular response to unfolded protein	GO:0034620		1.633E-04	0.06258116
nucleotide-excision repair. DNA gap filling	GO:0006297		1.633E-04	0.053641
regulation of mitotic metaphase/anaphase transition	GO:0030071		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
ER-nuclear signaling pathway	GO:0006984		3.425E-04	0.07876481
fat cell differentiation	GO:0045444		3.733E-04	0.07805731

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.052E-05	0.04719789
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.03307007
histone deacetylation	GO:0016575		7.51E-05	0.05757426
negative regulation of cell cycle process	GO:0010948		1.43E-04	0.0821973
protein amino acid deacetylation	GO:0006476		1.633E-04	0.07509739
cellular response to unfolded protein	GO:0034620		1.633E-04	0.06258116
nucleotide-excision repair. DNA gap filling	GO:0006297		1.633E-04	0.053641
regulation of mitotic metaphase/anaphase transition	GO:0030071		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
ER-nuclear signaling pathway	GO:0006984		3.425E-04	0.07876481
fat cell differentiation	GO:0045444		3.733E-04	0.07805731

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.052E-05	0.04719789
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.03307007
histone deacetylation	GO:0016575		7.51E-05	0.05757426
negative regulation of cell cycle process	GO:0010948		1.43E-04	0.0821973
protein amino acid deacetylation	GO:0006476		1.633E-04	0.07509739
cellular response to unfolded protein	GO:0034620		1.633E-04	0.06258116
nucleotide-excision repair. DNA gap filling	GO:0006297		1.633E-04	0.053641
regulation of mitotic metaphase/anaphase transition	GO:0030071		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
ER-nuclear signaling pathway	GO:0006984		3.425E-04	0.07876481
fat cell differentiation	GO:0045444		3.733E-04	0.07805731

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.052E-05	0.04719789
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.03307007
histone deacetylation	GO:0016575		7.51E-05	0.05757426
negative regulation of cell cycle process	GO:0010948		1.43E-04	0.0821973
protein amino acid deacetylation	GO:0006476		1.633E-04	0.07509739
cellular response to unfolded protein	GO:0034620		1.633E-04	0.06258116
nucleotide-excision repair. DNA gap filling	GO:0006297		1.633E-04	0.053641
regulation of mitotic metaphase/anaphase transition	GO:0030071		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
ER-nuclear signaling pathway	GO:0006984		3.425E-04	0.07876481
fat cell differentiation	GO:0045444		3.733E-04	0.07805731