Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 11339-0-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1456	1.374e-02	4.987e-03	7.490e-02
IPC-NIBC-129	0.0995	4.337e-02	3.404e-02	2.097e-01
Ivshina_GPL96-GPL97	0.2316	2.192e-01	2.165e-01	8.730e-01
Loi_GPL570	0.2841	1.039e-01	1.298e-01	3.895e-01
Loi_GPL96-GPL97	0.1696	2.627e-02	1.773e-02	3.526e-01
Pawitan_GPL96-GPL97	0.3557	8.066e-02	4.132e-02	4.320e-01
Schmidt	0.2076	2.845e-02	3.015e-02	1.806e-01
Sotiriou	0.2621	1.038e-01	4.414e-02	5.801e-01
Wang	0.1762	7.193e-02	5.565e-02	2.370e-01
Zhang	0.2746	4.195e-03	1.930e-03	2.281e-02

Expression data for subnetwork 11339-0-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 11339-0-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
cttn		5	20	8	9	0.067	0.065	0.123	0.238	0.126	0.216	0.069	0.115	0.129	0.025
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
hras		5	20	51	36	0.049	-0.030	0.094	0.210	0.160	0.245	0.086	0.208	0.001	0.003
oip5		1	90	192	193	0.040	0.082	0.085	0.226	0.100	0.140	0.164	0.059	0.120	0.065
braf		1	90	192	193	0.017	-0.109	0.073	0.006	0.072	0.157	0.092	0.071	0.070	0.033
eif2s1		13	12	8	4	-0.031	0.151	0.253	0.182	0.098	0.270	0.233	0.038	0.122	0.239
grb2		6	17	8	7	0.084	-0.013	0.086	-0.031	0.162	0.065	0.158	0.127	-0.097	0.194

GO Enrichment output for subnetwork 11339-0-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	0.03063632
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	0.02143316
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	0.0190408
regulation of synaptic transmission. GABAergic	GO:0032228		2.484E-05	0.0142806
regulation of long-term neuronal synaptic plasticity	GO:0048169		3.987E-05	0.01833977
response to light stimulus	GO:0009416		1.032E-04	0.03955791
cellular response to unfolded protein	GO:0034620		1.06E-04	0.03481319
nucleotide-excision repair. DNA gap filling	GO:0006297		1.06E-04	0.03046155
Ras protein signal transduction	GO:0007265		1.165E-04	0.02977394
visual learning	GO:0008542		1.349E-04	0.03103525
regulation of neuronal synaptic plasticity	GO:0048168		1.507E-04	0.03151511

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.565E-06	0.01848231
regulation of Rac protein signal transduction	GO:0035020		7.565E-06	9.241E-03
regulation of synaptic transmission. GABAergic	GO:0032228		7.565E-06	6.161E-03
regulation of long-term neuronal synaptic plasticity	GO:0048169		1.215E-05	7.421E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.454E-05	0.01199054
nucleotide-excision repair. DNA gap filling	GO:0006297		3.234E-05	0.01316802
regulation of neuronal synaptic plasticity	GO:0048168		4.604E-05	0.01606841
visual learning	GO:0008542		4.604E-05	0.01405986
cellular response to unfolded protein	GO:0034620		5.114E-05	0.01388186
cell aging	GO:0007569		6.214E-05	0.01517999
visual behavior	GO:0007632		6.803E-05	0.01510946

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.053E-05	0.02534487
regulation of Rac protein signal transduction	GO:0035020		1.053E-05	0.01267243
regulation of synaptic transmission. GABAergic	GO:0032228		1.053E-05	8.448E-03
regulation of long-term neuronal synaptic plasticity	GO:0048169		1.692E-05	0.01017554
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.067E-05	9.946E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.501E-05	0.01804905
regulation of neuronal synaptic plasticity	GO:0048168		6.407E-05	0.02202076
cellular response to unfolded protein	GO:0034620		6.407E-05	0.01926816
visual learning	GO:0008542		6.407E-05	0.01712726
cell aging	GO:0007569		7.862E-05	0.01891589
visual behavior	GO:0007632		9.465E-05	0.02070182

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.565E-06	0.01848231
regulation of Rac protein signal transduction	GO:0035020		7.565E-06	9.241E-03
regulation of synaptic transmission. GABAergic	GO:0032228		7.565E-06	6.161E-03
regulation of long-term neuronal synaptic plasticity	GO:0048169		1.215E-05	7.421E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.454E-05	0.01199054
nucleotide-excision repair. DNA gap filling	GO:0006297		3.234E-05	0.01316802
regulation of neuronal synaptic plasticity	GO:0048168		4.604E-05	0.01606841
visual learning	GO:0008542		4.604E-05	0.01405986
cellular response to unfolded protein	GO:0034620		5.114E-05	0.01388186
cell aging	GO:0007569		6.214E-05	0.01517999
visual behavior	GO:0007632		6.803E-05	0.01510946

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.053E-05	0.02534487
regulation of Rac protein signal transduction	GO:0035020		1.053E-05	0.01267243
regulation of synaptic transmission. GABAergic	GO:0032228		1.053E-05	8.448E-03
regulation of long-term neuronal synaptic plasticity	GO:0048169		1.692E-05	0.01017554
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.067E-05	9.946E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.501E-05	0.01804905
regulation of neuronal synaptic plasticity	GO:0048168		6.407E-05	0.02202076
cellular response to unfolded protein	GO:0034620		6.407E-05	0.01926816
visual learning	GO:0008542		6.407E-05	0.01712726
cell aging	GO:0007569		7.862E-05	0.01891589
visual behavior	GO:0007632		9.465E-05	0.02070182

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.053E-05	0.02534487
regulation of Rac protein signal transduction	GO:0035020		1.053E-05	0.01267243
regulation of synaptic transmission. GABAergic	GO:0032228		1.053E-05	8.448E-03
regulation of long-term neuronal synaptic plasticity	GO:0048169		1.692E-05	0.01017554
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.067E-05	9.946E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.501E-05	0.01804905
regulation of neuronal synaptic plasticity	GO:0048168		6.407E-05	0.02202076
cellular response to unfolded protein	GO:0034620		6.407E-05	0.01926816
visual learning	GO:0008542		6.407E-05	0.01712726
cell aging	GO:0007569		7.862E-05	0.01891589
visual behavior	GO:0007632		9.465E-05	0.02070182

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	0.03063632
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	0.02143316
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	0.0190408
regulation of synaptic transmission. GABAergic	GO:0032228		2.484E-05	0.0142806
regulation of long-term neuronal synaptic plasticity	GO:0048169		3.987E-05	0.01833977
response to light stimulus	GO:0009416		1.032E-04	0.03955791
cellular response to unfolded protein	GO:0034620		1.06E-04	0.03481319
nucleotide-excision repair. DNA gap filling	GO:0006297		1.06E-04	0.03046155
Ras protein signal transduction	GO:0007265		1.165E-04	0.02977394
visual learning	GO:0008542		1.349E-04	0.03103525
regulation of neuronal synaptic plasticity	GO:0048168		1.507E-04	0.03151511

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	0.03063632
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	0.02143316
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	0.0190408
regulation of synaptic transmission. GABAergic	GO:0032228		2.484E-05	0.0142806
regulation of long-term neuronal synaptic plasticity	GO:0048169		3.987E-05	0.01833977
response to light stimulus	GO:0009416		1.032E-04	0.03955791
cellular response to unfolded protein	GO:0034620		1.06E-04	0.03481319
nucleotide-excision repair. DNA gap filling	GO:0006297		1.06E-04	0.03046155
Ras protein signal transduction	GO:0007265		1.165E-04	0.02977394
visual learning	GO:0008542		1.349E-04	0.03103525
regulation of neuronal synaptic plasticity	GO:0048168		1.507E-04	0.03151511

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	0.03063632
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	0.02143316
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	0.0190408
regulation of synaptic transmission. GABAergic	GO:0032228		2.484E-05	0.0142806
regulation of long-term neuronal synaptic plasticity	GO:0048169		3.987E-05	0.01833977
response to light stimulus	GO:0009416		1.032E-04	0.03955791
cellular response to unfolded protein	GO:0034620		1.06E-04	0.03481319
nucleotide-excision repair. DNA gap filling	GO:0006297		1.06E-04	0.03046155
Ras protein signal transduction	GO:0007265		1.165E-04	0.02977394
visual learning	GO:0008542		1.349E-04	0.03103525
regulation of neuronal synaptic plasticity	GO:0048168		1.507E-04	0.03151511

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	0.03063632
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	0.02143316
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	0.0190408
regulation of synaptic transmission. GABAergic	GO:0032228		2.484E-05	0.0142806
regulation of long-term neuronal synaptic plasticity	GO:0048169		3.987E-05	0.01833977
response to light stimulus	GO:0009416		1.032E-04	0.03955791
cellular response to unfolded protein	GO:0034620		1.06E-04	0.03481319
nucleotide-excision repair. DNA gap filling	GO:0006297		1.06E-04	0.03046155
Ras protein signal transduction	GO:0007265		1.165E-04	0.02977394
visual learning	GO:0008542		1.349E-04	0.03103525
regulation of neuronal synaptic plasticity	GO:0048168		1.507E-04	0.03151511